Experiment set1S51 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_00414 +1.1 4.1 Pyruvate dehydrogenase complex repressor compare
MPMX19_06197 +1.0 2.5 hypothetical protein compare
MPMX19_05207 +1.0 2.1 Hemolysin secretion protein D, plasmid compare
MPMX19_03655 +1.0 2.3 hypothetical protein compare
MPMX19_04638 +1.0 2.6 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05726 +0.9 2.7 hypothetical protein compare
MPMX19_05581 +0.8 1.4 hypothetical protein compare
MPMX19_06027 +0.8 3.9 hypothetical protein compare
MPMX19_00166 +0.8 1.3 hypothetical protein compare
MPMX19_05152 +0.8 2.9 Phosphonoacetaldehyde hydrolase compare
MPMX19_02424 +0.8 2.9 hypothetical protein compare
MPMX19_03450 +0.8 1.4 hypothetical protein compare
MPMX19_05725 +0.7 2.0 hypothetical protein compare
MPMX19_06490 +0.7 1.4 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01978 +0.7 1.6 hypothetical protein compare
MPMX19_06526 +0.7 2.7 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05333 +0.7 1.2 Thymidine phosphorylase compare
MPMX19_02532 +0.7 2.3 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_03072 +0.7 0.9 hypothetical protein compare
MPMX19_04161 +0.7 1.7 hypothetical protein compare
MPMX19_01454 +0.6 1.8 hypothetical protein compare
MPMX19_05231 +0.6 3.4 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_05534 +0.6 1.4 DNA gyrase inhibitor YacG compare
MPMX19_06387 +0.6 3.1 hypothetical protein compare
MPMX19_03728 +0.6 1.6 hypothetical protein compare
MPMX19_04682 +0.6 1.6 hypothetical protein compare
MPMX19_05203 +0.6 2.2 hypothetical protein compare
MPMX19_06460 +0.6 1.6 DNA-invertase hin compare
MPMX19_05362 +0.6 1.7 hypothetical protein compare
MPMX19_02348 +0.6 2.1 hypothetical protein compare
MPMX19_06843 +0.6 2.4 hypothetical protein compare
MPMX19_01864 +0.6 1.7 Regulatory protein AtoC compare
MPMX19_02871 +0.6 2.6 HTH-type transcriptional activator RhaR compare
MPMX19_01005 +0.6 2.8 hypothetical protein compare
MPMX19_02251 +0.6 1.7 hypothetical protein compare
MPMX19_02279 +0.5 1.8 hypothetical protein compare
MPMX19_05623 +0.5 1.8 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_00212 +0.5 4.6 Nitrogen fixation regulation protein FixK compare
MPMX19_01955 +0.5 1.0 Putative anti-sigma factor antagonist compare
MPMX19_04085 +0.5 1.7 hypothetical protein compare
MPMX19_02608 +0.5 2.5 hypothetical protein compare
MPMX19_05853 +0.5 2.1 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03195 +0.5 1.2 hypothetical protein compare
MPMX19_03823 +0.5 2.0 hypothetical protein compare
MPMX19_03085 +0.5 1.8 Hydrogen peroxide-inducible genes activator compare
MPMX19_00370 +0.5 1.4 hypothetical protein compare
MPMX19_05798 +0.5 1.0 HTH-type transcriptional repressor NanR compare
MPMX19_05043 +0.5 2.5 hypothetical protein compare
MPMX19_04760 +0.5 2.9 Sialic acid TRAP transporter large permease protein SiaM compare
MPMX19_01235 +0.5 1.1 hypothetical protein compare
MPMX19_03972 +0.5 2.0 Enolase compare
MPMX19_03141 +0.5 1.6 hypothetical protein compare
MPMX19_01964 +0.5 1.6 hypothetical protein compare
MPMX19_03699 +0.5 1.7 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_02801 +0.5 1.2 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03549 +0.5 1.7 HTH-type transcriptional regulator PgrR compare
MPMX19_01083 +0.5 2.6 hypothetical protein compare
MPMX19_01415 +0.5 1.8 hypothetical protein compare
MPMX19_06610 +0.5 1.3 hypothetical protein compare
MPMX19_06762 +0.5 0.9 Peptide deformylase compare
MPMX19_03552 +0.5 1.5 hypothetical protein compare
MPMX19_02884 +0.5 2.9 hypothetical protein compare
MPMX19_05622 +0.5 3.4 Sensor histidine kinase RegB compare
MPMX19_04584 +0.5 1.8 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02310 +0.5 1.6 hypothetical protein compare
MPMX19_03423 +0.5 2.0 hypothetical protein compare
MPMX19_06646 +0.5 1.8 hypothetical protein compare
MPMX19_05554 +0.5 1.7 hypothetical protein compare
MPMX19_05555 +0.5 2.4 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
MPMX19_02912 +0.5 1.9 hypothetical protein compare
MPMX19_03298 +0.5 1.0 hypothetical protein compare
MPMX19_03933 +0.5 2.4 hypothetical protein compare
MPMX19_03111 +0.5 2.8 Putative fatty-acid--CoA ligase FadD21 compare
MPMX19_04669 +0.5 1.2 Glucose 1-dehydrogenase compare
MPMX19_03862 +0.5 1.7 hypothetical protein compare
MPMX19_06481 +0.5 2.4 Thiosulfate sulfurtransferase GlpE compare
MPMX19_04861 +0.5 1.4 hypothetical protein compare
MPMX19_04025 +0.5 2.1 hypothetical protein compare
MPMX19_00262 +0.5 0.8 Thiazole synthase compare
MPMX19_06911 +0.5 2.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06518 +0.4 2.0 Methionine import system permease protein MetP compare
MPMX19_04484 +0.4 1.9 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX19_04145 +0.4 1.4 hypothetical protein compare
MPMX19_06395 +0.4 1.7 Inner membrane protein YqaA compare
MPMX19_02880 +0.4 2.0 hypothetical protein compare
MPMX19_05220 +0.4 1.1 hypothetical protein compare
MPMX19_04693 +0.4 2.0 hypothetical protein compare
MPMX19_01811 +0.4 1.2 hypothetical protein compare
MPMX19_06506 +0.4 1.3 hypothetical protein compare
MPMX19_02092 +0.4 1.8 hypothetical protein compare
MPMX19_05035 +0.4 1.9 ATP synthase subunit a compare
MPMX19_05005 +0.4 1.5 hypothetical protein compare
MPMX19_01866 +0.4 1.6 Sulfur carrier protein CysO compare
MPMX19_06897 +0.4 1.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00015 +0.4 1.5 hypothetical protein compare
MPMX19_02308 +0.4 2.4 hypothetical protein compare
MPMX19_03123 +0.4 1.1 Citrate lyase acyl carrier protein compare
MPMX19_06199 +0.4 1.6 GTPase HflX compare
MPMX19_05160 +0.4 1.9 hypothetical protein compare
MPMX19_01719 +0.4 1.2 Putative fluoride ion transporter CrcB compare
MPMX19_06187 +0.4 2.1 hypothetical protein compare
MPMX19_06500 +0.4 2.8 hypothetical protein compare
MPMX19_02811 +0.4 1.8 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_00204 +0.4 1.4 hypothetical protein compare
MPMX19_03561 +0.4 2.1 Propane 2-monooxygenase, effector component compare
MPMX19_02687 +0.4 2.3 hypothetical protein compare
MPMX19_00025 +0.4 0.7 hypothetical protein compare
MPMX19_04079 +0.4 0.7 hypothetical protein compare
MPMX19_04662 +0.4 2.5 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_03308 +0.4 1.4 hypothetical protein compare
MPMX19_01119 +0.4 1.2 hypothetical protein compare
MPMX19_06874 +0.4 1.1 hypothetical protein compare
MPMX19_06886 +0.4 2.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04390 +0.4 1.1 hypothetical protein compare
MPMX19_04687 +0.4 1.4 Atrazine chlorohydrolase compare
MPMX19_06464 +0.4 1.6 Tryptophan synthase beta chain compare
MPMX19_00318 +0.4 2.1 hypothetical protein compare
MPMX19_06156 +0.4 1.2 hypothetical protein compare
MPMX19_02248 +0.4 1.7 hypothetical protein compare
MPMX19_03095 +0.4 1.1 hypothetical protein compare
MPMX19_06737 +0.4 1.9 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_05295 +0.4 0.7 hypothetical protein compare
MPMX19_03112 +0.4 2.0 Ribonuclease BN compare
MPMX19_04140 +0.4 2.3 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
MPMX19_02548 +0.4 2.2 ATP-dependent protease subunit HslV compare
MPMX19_00956 +0.4 1.2 hypothetical protein compare
MPMX19_00852 +0.4 1.1 hypothetical protein compare
MPMX19_05040 +0.4 2.0 hypothetical protein compare
MPMX19_06898 +0.4 2.3 FAD-dependent urate hydroxylase compare
MPMX19_04560 +0.4 1.2 hypothetical protein compare
MPMX19_05823 +0.4 2.0 hypothetical protein compare
MPMX19_03883 +0.4 1.7 hypothetical protein compare
MPMX19_03476 +0.4 1.3 hypothetical protein compare
MPMX19_00258 +0.4 1.4 Protein ImuB compare
MPMX19_06808 +0.4 1.1 HTH-type transcriptional regulator DmlR compare
MPMX19_03884 +0.4 1.6 hypothetical protein compare
MPMX19_04735 +0.4 1.7 hypothetical protein compare
MPMX19_03557 +0.4 1.6 HTH-type transcriptional regulator CynR compare
MPMX19_06510 +0.4 1.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_00064 +0.4 2.3 hypothetical protein compare
MPMX19_00918 +0.4 1.9 hypothetical protein compare
MPMX19_00112 +0.4 1.4 Multidrug transporter EmrE compare
MPMX19_02149 +0.4 1.6 hypothetical protein compare
MPMX19_06857 +0.4 2.1 Monomeric sarcosine oxidase compare
MPMX19_06299 +0.4 2.0 hypothetical protein compare
MPMX19_06760 +0.4 1.7 Taurine-binding periplasmic protein compare
MPMX19_03710 +0.4 1.6 Glycine cleavage system transcriptional activator compare
MPMX19_04095 +0.4 1.3 hypothetical protein compare
MPMX19_06513 +0.4 2.1 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_06315 +0.4 0.6 ISL3 family transposase ISAli18 compare
MPMX19_00206 +0.4 2.8 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_03924 +0.4 1.1 hypothetical protein compare
MPMX19_05528 +0.4 2.1 hypothetical protein compare
MPMX19_05023 +0.4 0.9 hypothetical protein compare
MPMX19_06180 +0.4 1.1 Sensor histidine kinase RegB compare
MPMX19_04975 +0.4 1.2 hypothetical protein compare
MPMX19_06770 +0.4 1.8 NAD-dependent glycerol dehydrogenase compare
MPMX19_01701 +0.4 2.6 hypothetical protein compare
MPMX19_06272 +0.4 0.5 hypothetical protein compare
MPMX19_03005 +0.4 1.0 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
MPMX19_04986 +0.4 1.5 hypothetical protein compare
MPMX19_00267 +0.4 1.7 hypothetical protein compare
MPMX19_04032 +0.4 2.1 hypothetical protein compare
MPMX19_06207 +0.4 1.5 hypothetical protein compare
MPMX19_01416 +0.4 1.9 hypothetical protein compare
MPMX19_02275 +0.4 1.3 hypothetical protein compare
MPMX19_04826 +0.4 1.5 hypothetical protein compare
MPMX19_03897 +0.4 1.1 hypothetical protein compare
MPMX19_04865 +0.4 2.2 Sensor histidine kinase RcsC compare
MPMX19_00718 +0.4 1.2 hypothetical protein compare
MPMX19_03591 +0.4 1.7 2-oxo-tetronate isomerase compare
MPMX19_01521 +0.4 1.8 hypothetical protein compare
MPMX19_05918 +0.4 1.8 Flagellar biosynthetic protein FliP compare
MPMX19_05221 +0.4 1.0 hypothetical protein compare
MPMX19_03637 +0.4 1.7 Nopaline-binding periplasmic protein compare
MPMX19_06988 +0.4 1.3 hypothetical protein compare
MPMX19_05584 +0.4 1.7 hypothetical protein compare
MPMX19_02063 +0.4 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05818 +0.4 1.0 hypothetical protein compare
MPMX19_02866 +0.3 1.6 4-hydroxymandelate oxidase compare
MPMX19_06467 +0.3 1.6 hypothetical protein compare
MPMX19_06837 +0.3 2.4 Putrescine--pyruvate aminotransferase compare
MPMX19_02733 +0.3 2.0 Regulatory protein LuxO compare
MPMX19_03073 +0.3 1.2 hypothetical protein compare
MPMX19_02794 +0.3 2.1 hypothetical protein compare
MPMX19_04409 +0.3 1.2 hypothetical protein compare
MPMX19_03427 +0.3 1.5 hypothetical protein compare
MPMX19_06759 +0.3 1.2 Taurine import ATP-binding protein TauB compare
MPMX19_01067 +0.3 0.9 hypothetical protein compare
MPMX19_01401 +0.3 0.7 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_04609 +0.3 1.4 Putative short-chain type dehydrogenase/reductase compare
MPMX19_00207 +0.3 1.9 hypothetical protein compare
MPMX19_06137 +0.3 1.2 hypothetical protein compare
MPMX19_04738 +0.3 1.0 hypothetical protein compare
MPMX19_06141 +0.3 1.3 Intermembrane phospholipid transport system permease protein MlaE compare
MPMX19_06260 +0.3 1.4 hypothetical protein compare
MPMX19_05241 +0.3 1.6 hypothetical protein compare
MPMX19_06535 +0.3 0.9 hypothetical protein compare
MPMX19_04144 +0.3 2.0 putative manganese efflux pump MntP compare
MPMX19_04724 +0.3 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms