Experiment set1S509 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

200 most important genes:

  gene name fitness t score description  
MIT1002_03690 -8.3 -5.8 DnaK suppressor protein compare
MIT1002_01263 -8.0 -4.9 7-cyano-7-deazaguanine synthase compare
MIT1002_01266 -7.5 -5.2 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_00467 -7.5 -5.2 Argininosuccinate lyase compare
MIT1002_02993 -7.4 -5.1 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02831 -7.3 -14.8 Isocitrate lyase compare
MIT1002_00471 -7.3 -20.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_02638 -7.2 -8.6 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_00377 -7.2 -11.0 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00468 -7.1 -8.4 Argininosuccinate synthase compare
MIT1002_03139 -7.1 -26.7 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00843 -7.0 -4.9 hypothetical protein compare
MIT1002_00466 -7.0 -8.4 Amino-acid acetyltransferase compare
MIT1002_03179 -7.0 -10.7 Cystathionine beta-lyase PatB compare
MIT1002_01979 -7.0 -6.8 Carnitinyl-CoA dehydratase compare
MIT1002_02633 -6.9 -16.2 Histidinol dehydrogenase compare
MIT1002_00160 -6.9 -4.8 Diaminopimelate decarboxylase compare
MIT1002_03084 -6.9 -12.5 Threonine synthase compare
MIT1002_02634 -6.9 -9.5 Histidinol-phosphate aminotransferase compare
MIT1002_03130 -6.9 -4.8 2-methylcitrate synthase compare
MIT1002_02637 -6.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_04045 -6.8 -16.9 Ketol-acid reductoisomerase compare
MIT1002_02636 -6.8 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_01429 -6.8 -4.7 Anthranilate synthase component II compare
MIT1002_01428 -6.8 -4.7 Anthranilate synthase component II compare
MIT1002_03140 -6.8 -12.2 Glutamate synthase [NADPH] small chain compare
MIT1002_00469 -6.6 -14.7 Ornithine carbamoyltransferase compare
MIT1002_00946 -6.6 -10.9 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_00933 -6.5 -9.8 Inner membrane protein YohK compare
MIT1002_01467 -6.5 -15.9 Carbamoyl-phosphate synthase large chain compare
MIT1002_01466 -6.5 -8.9 Carbamoyl-phosphate synthase small chain compare
MIT1002_00485 -6.5 -12.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_01295 -6.4 -4.5 Inner membrane protein YpjD compare
MIT1002_02708 -6.4 -10.7 Phosphoserine phosphatase compare
MIT1002_04041 -6.4 -14.3 Dihydroxy-acid dehydratase compare
MIT1002_00988 -6.4 -6.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_03086 -6.3 -20.7 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_01430 -6.3 -4.3 Anthranilate synthase component 1 compare
MIT1002_01264 -6.2 -7.4 7-carboxy-7-deazaguanine synthase compare
MIT1002_00947 -6.2 -20.4 3-isopropylmalate dehydratase large subunit compare
MIT1002_02833 -6.2 -21.7 Malate synthase G compare
MIT1002_01984 -6.2 -8.5 queuosine biosynthesis protein QueD compare
MIT1002_00504 -6.2 -9.3 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_00948 -6.1 -17.7 3-isopropylmalate dehydrogenase compare
MIT1002_00522 -6.1 -10.9 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_03062 -6.0 -6.9 Pyrroline-5-carboxylate reductase compare
MIT1002_02991 -6.0 -4.1 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_01112 -6.0 -8.0 Homoserine O-succinyltransferase compare
MIT1002_02266 -6.0 -13.8 Methionine gamma-lyase compare
MIT1002_02632 -5.9 -7.0 ATP phosphoribosyltransferase compare
MIT1002_03085 -5.8 -7.9 Homoserine kinase compare
MIT1002_02760 -5.8 -4.0 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_02394 -5.8 -12.9 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_03961 -5.8 -19.1 Phosphoribosylamine--glycine ligase compare
MIT1002_03516 -5.8 -19.9 Acetyl-coenzyme A synthetase compare
MIT1002_00503 -5.8 -18.1 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_00521 -5.7 -3.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_01427 -5.7 -3.2 Tryptophan biosynthesis protein TrpCF compare
MIT1002_04092 -5.7 -3.9 putative type I restriction enzymeP M protein compare
MIT1002_01027 -5.7 -27.3 Phosphoribosylformylglycinamidine synthase compare
MIT1002_02832 -5.6 -9.3 Nodulation protein D 2 compare
MIT1002_00949 -5.6 -18.2 2-isopropylmalate synthase compare
MIT1002_02184 -5.5 -2.5 Orotidine 5'-phosphate decarboxylase compare
MIT1002_02035 -5.5 -2.2 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_02219 -5.4 -15.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_02639 -5.3 -10.2 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_02635 -5.3 -13.9 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_03096 -5.2 -14.5 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_01345 -5.2 -2.4 tRNA-Ser compare
MIT1002_00423 -5.2 -6.2 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_01316 -5.2 -11.7 P-protein compare
MIT1002_03488 -5.2 -3.6 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_00437 -5.1 -13.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_02524 -5.1 -14.6 Amidophosphoribosyltransferase compare
MIT1002_00884 -5.1 -2.6 hypothetical protein compare
MIT1002_02220 -5.1 -12.4 Phosphoribosylglycinamide formyltransferase compare
MIT1002_00470 -5.0 -8.0 Acetylglutamate kinase compare
MIT1002_02188 -5.0 -3.4 Integration host factor subunit beta compare
MIT1002_04044 -4.9 -17.7 HTH-type transcriptional regulator GltC compare
MIT1002_02538 -4.9 -2.2 3-oxoacyl-[acyl-carrier-protein] synthase 1 compare
MIT1002_00486 -4.9 -1.1 Protein-export protein SecB compare
MIT1002_03978 -4.8 -3.3 General secretion pathway protein F compare
MIT1002_01925 -4.7 -1.9 hypothetical protein compare
MIT1002_03484 -4.7 -2.1 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_03979 -4.7 -1.8 Pullulanase secretion protein PulG compare
MIT1002_03977 -4.6 -3.2 Type II traffic warden ATPase compare
MIT1002_00115 -4.5 -2.1 Iron(III)-binding periplasmic protein compare
MIT1002_04040 -4.5 -15.7 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_03805 -4.5 -2.5 hypothetical protein compare
MIT1002_03785 -4.5 -12.3 Modulator of FtsH protease HflC compare
MIT1002_03980 -4.5 -3.1 General secretion pathway protein H compare
MIT1002_01885 -4.5 -8.0 Gamma-glutamyl phosphate reductase compare
MIT1002_03982 -4.4 -2.6 PilD-dependent protein PddD compare
MIT1002_03485 -4.4 -2.5 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_01163 -4.4 -2.5 hypothetical protein compare
MIT1002_00114 -4.3 -2.2 hypothetical protein compare
MIT1002_02406 -4.3 -2.8 6-phosphogluconolactonase compare
MIT1002_03487 -4.3 -3.0 Na(+)-translocating NADH-quinone reductase subunit B compare
MIT1002_03981 -4.3 -1.9 Putative general secretion pathway protein I compare
MIT1002_01457 -4.2 -1.3 Heat shock protein 70 compare
MIT1002_00117 -4.2 -2.3 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03976 -4.2 -2.9 Pullulanase secretion envelope PulD compare
MIT1002_03486 -4.1 -2.8 Na(+)-translocating NADH-quinone reductase subunit C compare
MIT1002_03983 -4.0 -2.8 Putative general secretion pathway protein K compare
MIT1002_03786 -4.0 -10.5 Modulator of FtsH protease HflK compare
MIT1002_01168 -4.0 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
MIT1002_02702 -4.0 -10.9 Serine hydroxymethyltransferase compare
MIT1002_04093 -3.9 -1.2 Type I restriction modification DNA specificity domain protein compare
MIT1002_04120 -3.9 -1.2 F0F1 ATP synthase subunit I compare
MIT1002_01222 -3.8 -2.1 Glutamate--cysteine ligase compare
MIT1002_00074 -3.8 -3.4 tRNA-Arg compare
MIT1002_02130 -3.7 -2.5 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_00816 -3.7 -4.1 Cytochrome c1 precursor compare
MIT1002_03321 -3.7 -13.8 Aldehyde dehydrogenase B compare
MIT1002_02810 -3.7 -10.2 preprotein translocase subunit SecF compare
MIT1002_02405 -3.6 -6.5 Phosphogluconate dehydratase compare
MIT1002_02581 -3.6 -4.7 Disulfide oxidoreductase compare
MIT1002_03885 -3.6 -9.0 NADH dehydrogenase compare
MIT1002_03984 -3.6 -2.5 General secretion pathway protein L compare
MIT1002_00815 -3.6 -4.0 Cytochrome b/c1 compare
MIT1002_02573 -3.5 -7.6 hypothetical protein compare
MIT1002_00932 -3.5 -2.2 holin-like protein compare
MIT1002_00189 -3.4 -11.5 Galactokinase compare
MIT1002_04135 -3.4 -14.3 ParB/RepB/Spo0J family partition protein compare
MIT1002_03698 -3.4 -5.6 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_00188 -3.3 -9.2 Galactose-1-phosphate uridylyltransferase compare
MIT1002_01638 -3.3 -5.0 Integration host factor subunit alpha compare
MIT1002_02136 -3.3 -6.8 hypothetical protein compare
MIT1002_04134 -3.3 -12.6 Sporulation initiation inhibitor protein soj compare
MIT1002_02129 -3.2 -6.4 hypothetical protein compare
MIT1002_02429 -3.2 -11.1 Glucose-resistance amylase regulator compare
MIT1002_03908 -3.2 -7.2 NAD(P) transhydrogenase subunit alpha compare
MIT1002_00827 -3.2 -4.1 RNA polymerase sigma-54 factor 2 compare
MIT1002_03985 -3.2 -4.7 General secretion pathway protein M compare
MIT1002_02404 -3.1 -8.1 Glucokinase compare
MIT1002_02811 -3.1 -11.6 preprotein translocase subunit SecD compare
MIT1002_02134 -3.1 -8.4 putative copper-importing P-type ATPase A compare
MIT1002_00833 -3.1 -6.8 Inner membrane protein YrbG compare
MIT1002_03539 -3.1 -2.2 Bifunctional protein BirA compare
MIT1002_02785 -3.0 -7.9 Outer membrane protein assembly factor BamB precursor compare
MIT1002_00670 -3.0 -1.9 Outer membrane protein TolC precursor compare
MIT1002_01544 -3.0 -8.7 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_04124 -2.9 -3.4 Glucose-inhibited division protein A compare
MIT1002_00116 -2.9 -2.2 Spermidine/putrescine transport system permease protein PotB compare
MIT1002_03331 -2.9 -8.6 D-lactate dehydrogenase compare
MIT1002_00076 -2.9 -2.3 transcriptional regulator, y4mF family compare
MIT1002_02972 -2.9 -6.6 Glycine cleavage system H protein compare
MIT1002_00138 -2.8 -9.8 Histone deacetylase-like amidohydrolase compare
MIT1002_03909 -2.8 -9.2 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_01736 -2.8 -11.8 Aminodeoxychorismate lyase compare
MIT1002_02400 -2.8 -10.9 4-alpha-glucanotransferase compare
MIT1002_03137 -2.8 -9.2 Aerobic respiration control sensor protein ArcB compare
MIT1002_03015 -2.7 -4.9 aspartoacylase compare
MIT1002_01129 -2.7 -3.5 Carbon storage regulator compare
MIT1002_00752 -2.7 -3.7 Phosphate regulon sensor protein PhoR compare
MIT1002_01917 -2.7 -3.8 hypothetical protein compare
MIT1002_00844 -2.6 -7.0 AFG1-like ATPase compare
MIT1002_00681 -2.6 -5.3 L-lysine 2,3-aminomutase compare
MIT1002_02133 -2.6 -2.9 putative integral membrane protein linked to a cation pump compare
MIT1002_03317 -2.6 -3.9 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_03907 -2.6 -9.7 NAD(P) transhydrogenase subunit beta compare
MIT1002_02014 -2.6 -9.0 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_01143 -2.5 -4.6 Phage shock protein A compare
MIT1002_01299 -2.5 -2.1 hypothetical protein compare
MIT1002_01472 -2.4 -2.8 16 kDa heat shock protein A compare
MIT1002_02306 -2.4 -5.1 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_02041 -2.4 -2.0 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase compare
MIT1002_00826 -2.4 -3.8 Ribosome hibernation promoting factor compare
MIT1002_02013 -2.4 -8.3 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_02812 -2.3 -3.6 preprotein translocase subunit YajC compare
MIT1002_00814 -2.3 -3.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_00066 -2.3 -7.5 Rhomboid protease GlpG compare
MIT1002_01763 -2.3 -1.9 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_02287 -2.3 -6.6 Electron transfer flavoprotein small subunit compare
MIT1002_02128 -2.3 -3.1 hypothetical protein compare
MIT1002_02012 -2.3 -11.0 Pyruvate dehydrogenase E1 component subunit alpha compare
MIT1002_01981 -2.3 -8.0 Inner membrane protein YejM compare
MIT1002_03483 -2.3 -1.8 Na(+)-translocating NADH-quinone reductase subunit F compare
MIT1002_01001 -2.3 -6.1 PII uridylyl-transferase compare
MIT1002_02759 -2.2 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_03771 -2.2 -6.5 N-acetylglucosamine repressor compare
MIT1002_02925 -2.2 -1.5 Regulatory protein BlaI compare
MIT1002_00883 -2.2 -1.9 putative transmembrane transcriptional regulator (anti-sigma factor) compare
MIT1002_00012 -2.2 -3.0 Cytochrome c4 precursor compare
MIT1002_00068 -2.2 -5.9 Chorismate--pyruvate lyase compare
MIT1002_02286 -2.2 -8.4 Electron transfer flavoprotein large subunit compare
MIT1002_02218 -2.1 -2.7 hypothetical protein compare
MIT1002_02807 -2.1 -4.0 Inositol-1-monophosphatase compare
MIT1002_03116 -2.1 -6.0 Spore coat protein SA compare
MIT1002_02441 -2.1 -4.4 Helix-turn-helix domain protein compare
MIT1002_02381 -2.1 -2.4 hypothetical protein compare
MIT1002_03869 -2.1 -1.1 CsbD-like protein compare
MIT1002_01827 -2.1 -4.0 High frequency lysogenization protein HflD compare
MIT1002_02349 -2.1 -9.5 2-hydroxypropyl-CoM lyase compare
MIT1002_02288 -2.1 -17.3 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
MIT1002_02348 -2.0 -10.1 hypothetical protein compare
MIT1002_00070 -2.0 -1.2 Membrane fusogenic activity compare
MIT1002_03843 -2.0 -5.9 Galactose operon repressor compare
MIT1002_03568 -2.0 -4.8 Mannosylfructose-phosphate synthase compare
MIT1002_01011 -2.0 -4.4 Regulator of sigma E protease compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 across organisms