Experiment set1S506 for Paraburkholderia sabiae LMG 24235

Compare to:

L-Rhamnose monohydrate carbon source

Group: carbon source
Media: AB_minimal medium + L-Rhamnose monohydrate (20 mM)
Culturing: Psabiae_ML3b, tube, Aerobic, at 28 (C), shaken=180 rpm
By: Marta Torres on 12/5/24

Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Rhamnose monohydrate in Paraburkholderia sabiae LMG 24235

For carbon source L-Rhamnose monohydrate across organisms

SEED Subsystems

Subsystem #Specific
L-rhamnose utilization 3
Alkanesulfonate assimilation 1
Fatty Acid Biosynthesis FASII 1
L-fucose utilization temp 1
Nitrate and nitrite ammonification 1
mycolic acid synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-rhamnose degradation III 7 6 4
L-rhamnose degradation II 8 5 3
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 12 3
gondoate biosynthesis (anaerobic) 4 4 1
palmitate biosynthesis III 29 28 7
tetradecanoate biosynthesis (mitochondria) 25 23 6
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 8 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 48 11
fatty acid elongation -- saturated 5 5 1
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 17 4
8-amino-7-oxononanoate biosynthesis IV 5 4 1
cis-vaccenate biosynthesis 5 4 1
L-rhamnose degradation I 5 2 1
superpathway of fatty acid biosynthesis II (plant) 43 38 8
8-amino-7-oxononanoate biosynthesis I 11 9 2
even iso-branched-chain fatty acid biosynthesis 34 30 6
anteiso-branched-chain fatty acid biosynthesis 34 30 6
odd iso-branched-chain fatty acid biosynthesis 34 30 6
L-arabinose degradation V 6 5 1
(5Z)-dodecenoate biosynthesis I 6 5 1
stearate biosynthesis II (bacteria and plants) 6 5 1
stearate biosynthesis IV 6 4 1
(5Z)-dodecenoate biosynthesis II 6 4 1
petroselinate biosynthesis 6 2 1
streptorubin B biosynthesis 34 20 5
biotin biosynthesis I 15 13 2
superpathway of fatty acid biosynthesis I (E. coli) 16 14 2
2-allylmalonyl-CoA biosynthesis 8 2 1
superpathway of fucose and rhamnose degradation 12 5 1
mycolate biosynthesis 205 25 5
superpathway of mycolate biosynthesis 239 26 5