Experiment set1S50 for Xanthobacter sp. DMC5

Compare to:

Methanol carbon source

200 most important genes:

  gene name fitness t score description  
GFF3446 -5.9 -4.0 Ribose 1,5-bisphosphate phosphokinase PhnN compare
GFF1981 -5.0 -8.4 Nitrate reductase compare
GFF1979 -5.0 -7.6 Sulfite reductase [ferredoxin] compare
GFF2380 -4.9 -5.8 GTP 3',8-cyclase compare
GFF1978 -4.8 -6.6 Nitrite reductase [NAD(P)H] compare
GFF612 -4.7 -3.2 Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase compare
GFF2447 -4.7 -6.4 Ribulose bisphosphate carboxylase small chain compare
GFF3696 -4.4 -3.0 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
GFF2122 -4.3 -3.0 hypothetical protein compare
GFF3028 -4.3 -2.9 Methanol dehydrogenase [cytochrome c] subunit 2 compare
GFF2442 -4.3 -9.5 Fructose-bisphosphate aldolase compare
GFF1006 -4.2 -2.9 hypothetical protein compare
GFF3699 -4.2 -7.0 hypothetical protein compare
GFF3855 -4.2 -5.0 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
GFF4361 -4.2 -9.4 Sulfate adenylyltransferase subunit 2 compare
GFF2445 -4.2 -10.8 Fructose-1,6-bisphosphatase class 1 compare
GFF1695 -4.2 -4.9 3-isopropylmalate dehydrogenase compare
GFF2446 -4.2 -10.4 Protein CbbX compare
GFF2448 -4.1 -13.0 Ribulose bisphosphate carboxylase large chain compare
GFF2444 -4.1 -8.8 Phosphoribulokinase, chromosomal compare
GFF1852 -4.1 -4.0 3-isopropylmalate dehydratase large subunit compare
GFF3703 -4.0 -2.7 Formyltransferase/hydrolase complex subunit D compare
GFF1899 -3.9 -3.5 Putative anti-sigma factor antagonist BtrV compare
GFF1831 -3.9 -7.9 Ethylmalonyl-CoA mutase compare
GFF537 -3.9 -5.9 Molybdenum cofactor guanylyltransferase compare
GFF3700 -3.9 -3.8 hypothetical protein compare
GFF2070 -3.9 -1.9 hypothetical protein compare
GFF3989 -3.7 -10.3 putative zinc protease compare
GFF1980 -3.7 -9.9 Ion-translocating oxidoreductase complex subunit B compare
GFF1005 -3.6 -5.5 hypothetical protein compare
GFF3697 -3.6 -2.5 Methenyltetrahydromethanopterin cyclohydrolase compare
GFF1974 -3.6 -8.3 Nitrate/nitrite binding protein NrtA compare
GFF4467 -3.6 -8.6 RNA polymerase sigma-54 factor 2 compare
GFF2388 -3.5 -6.0 hypothetical protein compare
GFF3029 -3.4 -8.4 Cytochrome c-L compare
GFF1976 -3.4 -8.5 Nitrate import ATP-binding protein NrtC compare
GFF3730 -3.4 -2.3 [Ribosomal protein S18]-alanine N-acetyltransferase compare
GFF4362 -3.4 -7.9 Bifunctional enzyme CysN/CysC compare
GFF1002 -3.4 -2.7 hypothetical protein compare
GFF207 -3.4 -5.6 hypothetical protein compare
GFF1118 -3.4 -9.2 Ferredoxin--NADP reductase compare
GFF3255 -3.4 -7.4 hypothetical protein compare
GFF718 -3.4 -2.3 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
GFF1138 -3.3 -4.5 hypothetical protein compare
GFF3025 -3.3 -7.9 hypothetical protein compare
GFF3704 -3.3 -5.4 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF1135 -3.3 -3.8 hypothetical protein compare
GFF3915 -3.2 -3.8 Low affinity potassium transport system protein kup compare
GFF956 -3.2 -3.7 Cyclic pyranopterin monophosphate synthase compare
GFF1654 -3.2 -9.2 Bifunctional chorismate mutase/prephenate dehydratase compare
GFF2443 -3.2 -12.3 Transketolase 2 compare
GFF3052 -3.2 -4.8 AB hydrolase superfamily protein YdjP compare
GFF3021 -3.1 -4.2 hypothetical protein compare
GFF3033 -3.1 -5.0 hypothetical protein compare
GFF1975 -3.0 -4.6 Bicarbonate transport system permease protein CmpB compare
GFF1843 -3.0 -2.6 3-isopropylmalate dehydratase small subunit 1 compare
GFF3022 -3.0 -7.6 hypothetical protein compare
GFF2389 -3.0 -10.2 Sulfite reductase [ferredoxin] compare
GFF2493 -3.0 -4.5 Beta-methylmalyl-CoA dehydratase compare
GFF3031 -3.0 -14.5 Methanol dehydrogenase [cytochrome c] subunit 1 compare
GFF1847 -3.0 -6.9 Quinolinate synthase A compare
GFF3698 -3.0 -2.8 hypothetical protein compare
GFF2833 -3.0 -2.8 HTH-type transcriptional regulator LutR compare
GFF3990 -3.0 -6.3 hypothetical protein compare
GFF2278 -3.0 -6.5 (2S)-methylsuccinyl-CoA dehydrogenase compare
GFF3058 -3.0 -3.4 N-acetylmuramic acid 6-phosphate phosphatase compare
GFF3816 -2.9 -4.8 hypothetical protein compare
GFF1848 -2.9 -2.8 L-aspartate oxidase compare
GFF1834 -2.9 -7.2 Crotonyl-CoA carboxylase/reductase compare
GFF3712 -2.9 -7.8 Response regulator MprA compare
GFF267 -2.8 -9.1 (R)-citramalate synthase compare
GFF1003 -2.8 -6.0 hypothetical protein compare
GFF3027 -2.8 -8.1 hypothetical protein compare
GFF4508 -2.8 -2.6 flagellum biosynthesis repressor protein FlbT compare
GFF4384 -2.8 -5.0 hypothetical protein compare
GFF4308 -2.8 -4.7 Molybdopterin adenylyltransferase compare
GFF209 -2.7 -13.2 Putative formate dehydrogenase compare
GFF257 -2.7 -8.7 Phosphomethylpyrimidine synthase compare
GFF1795 -2.7 -3.7 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF1916 -2.7 -5.4 putative transcriptional regulatory protein pdtaR compare
GFF3708 -2.7 -5.2 PqqA peptide cyclase compare
GFF211 -2.6 -4.0 NADH-quinone oxidoreductase subunit E compare
GFF210 -2.6 -6.9 hypothetical protein compare
GFF3034 -2.6 -4.6 Transcriptional activator protein ExaE compare
GFF4224 -2.6 -2.5 hypothetical protein compare
GFF3070 -2.6 -3.0 hypothetical protein compare
GFF387 -2.5 -4.8 hypothetical protein compare
GFF3024 -2.5 -2.4 hypothetical protein compare
GFF3030 -2.5 -8.7 hypothetical protein compare
GFF720 -2.5 -2.3 1-deoxy-D-xylulose-5-phosphate synthase compare
GFF3292 -2.5 -3.5 hypothetical protein compare
GFF850 -2.4 -2.8 tRNA-dihydrouridine synthase B compare
GFF1134 -2.4 -2.1 hypothetical protein compare
GFF4267 -2.4 -7.3 Hydroxyacylglutathione hydrolase compare
GFF2449 -2.4 -3.2 HTH-type transcriptional activator CmpR compare
GFF1004 -2.4 -4.8 hypothetical protein compare
GFF3984 -2.3 -1.7 Nitrogen regulatory protein P-II 2 compare
GFF3481 -2.3 -4.1 FMN reductase (NADH) NtaB compare
GFF3711 -2.3 -5.3 Coenzyme PQQ synthesis protein B compare
GFF1958 -2.3 -4.8 Pyruvate kinase compare
GFF3807 -2.3 -12.9 Methanol dehydrogenase [cytochrome c] subunit 1 compare
GFF2267 -2.3 -9.5 Phosphoenolpyruvate carboxylase compare
GFF4016 -2.2 -7.4 putative 3-hydroxybutyryl-CoA dehydrogenase compare
GFF3710 -2.2 -6.4 Bifunctional coenzyme PQQ synthesis protein C/D compare
GFF2326 -2.2 -1.5 hypothetical protein compare
GFF2400 -2.1 -5.0 2-isopropylmalate synthase compare
GFF2871 -2.1 -4.3 HTH-type transcriptional repressor GlaR compare
GFF3736 -2.1 -3.1 7-methyl-GTP pyrophosphatase compare
GFF3023 -2.0 -1.6 hypothetical protein compare
GFF4715 -2.0 -3.2 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
GFF4505 -2.0 -5.1 hypothetical protein compare
GFF4493 -2.0 -2.9 hypothetical protein compare
GFF4490 -1.9 -6.0 Flagellar basal-body rod protein FlgG compare
GFF3465 -1.9 -4.0 Molybdenum transport system permease protein ModB compare
GFF917 -1.9 -8.1 hypothetical protein compare
GFF540 -1.9 -5.7 hypothetical protein compare
GFF1726 -1.9 -3.3 Chitooligosaccharide deacetylase compare
GFF4515 -1.9 -4.2 hypothetical protein compare
GFF2294 -1.9 -1.5 30S ribosome-binding factor compare
GFF212 -1.8 -5.7 Hydrogen peroxide-inducible genes activator compare
GFF3388 -1.8 -8.5 hypothetical protein compare
GFF2943 -1.8 -2.1 hypothetical protein compare
GFF2507 -1.8 -1.8 hypothetical protein compare
GFF160 -1.8 -9.8 Acetyl-coenzyme A synthetase compare
GFF1189 -1.8 -2.5 hypothetical protein compare
GFF4219 -1.8 -2.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
GFF4421 -1.8 -1.9 Corrinoid adenosyltransferase compare
GFF4496 -1.8 -2.6 Flagellar motor switch protein FliG compare
GFF3860 -1.7 -1.4 Hydrazine synthase subunit beta compare
GFF1725 -1.7 -5.1 putative glycosyltransferase compare
GFF3709 -1.7 -1.8 Bifunctional coenzyme PQQ synthesis protein C/D compare
GFF4546 -1.7 -1.4 Short-chain-enoyl-CoA hydratase compare
GFF1659 -1.7 -2.9 Phosphoenolpyruvate-dependent phosphotransferase system compare
GFF1896 -1.7 -3.2 hypothetical protein compare
GFF4524 -1.6 -3.1 Regulator of RpoS compare
GFF1331 -1.6 -1.4 hypothetical protein compare
GFF3456 -1.6 -2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF4482 -1.6 -5.8 Flagellar M-ring protein compare
GFF2973 -1.6 -2.3 Anti-sigma-F factor NrsF compare
GFF4527 -1.6 -8.5 Adaptive-response sensory-kinase SasA compare
GFF3549 -1.6 -5.2 hypothetical protein compare
GFF516 -1.6 -5.7 3-methylmercaptopropionyl-CoA dehydrogenase compare
GFF1792 -1.6 -1.7 Putative aminoacrylate hydrolase RutD compare
GFF4514 -1.5 -1.9 hypothetical protein compare
GFF1662 -1.5 -3.0 hypothetical protein compare
GFF111 -1.5 -2.6 hypothetical protein compare
GFF4027 -1.5 -1.9 hypothetical protein compare
GFF4498 -1.5 -3.0 hypothetical protein compare
GFF4485 -1.5 -2.4 hypothetical protein compare
GFF3727 -1.5 -5.2 hypothetical protein compare
GFF1133 -1.5 -4.5 hypothetical protein compare
GFF295 -1.5 -3.3 hypothetical protein compare
GFF4483 -1.5 -4.5 hypothetical protein compare
GFF3861 -1.4 -2.2 Linearmycin resistance ATP-binding protein LnrL compare
GFF3526 -1.4 -2.5 NAD-dependent malic enzyme compare
GFF4503 -1.4 -2.8 putative secretion system apparatus ATP synthase SsaN compare
GFF3169 -1.4 -2.5 Modulator of FtsH protease HflK compare
GFF517 -1.4 -5.3 putative 3-hydroxyacyl-CoA dehydrogenase compare
GFF1136 -1.4 -5.4 hypothetical protein compare
GFF3864 -1.4 -1.2 Hypoxanthine phosphoribosyltransferase compare
GFF4526 -1.4 -2.2 Sporulation initiation phosphotransferase F compare
GFF4723 -1.4 -2.8 Multidrug resistance ABC transporter ATP-binding/permease protein BmrA compare
GFF490 -1.4 -1.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF1018 -1.4 -6.0 Cystathionine beta-lyase MetC compare
GFF699 -1.3 -1.5 Holin-like protein CidA compare
GFF1020 -1.3 -2.1 hypothetical protein compare
GFF3007 -1.3 -2.1 Short-chain-enoyl-CoA hydratase compare
GFF3427 -1.3 -5.1 Glutamine-dependent NAD(+) synthetase compare
GFF1747 -1.3 -1.9 hypothetical protein compare
GFF2383 -1.3 -5.0 Sulfate/thiosulfate import ATP-binding protein CysA compare
GFF1849 -1.3 -1.8 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
GFF4495 -1.3 -3.6 Flagellar biosynthetic protein FlhB compare
GFF3713 -1.3 -2.2 Adaptive-response sensory-kinase SasA compare
GFF4511 -1.2 -5.2 Flagellar biosynthesis protein FlhA compare
GFF1127 -1.2 -5.7 UDP-N-acetylglucosamine 4-epimerase compare
GFF4512 -1.2 -4.3 hypothetical protein compare
GFF4385 -1.2 -3.3 hypothetical protein compare
GFF1729 -1.2 -1.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase compare
GFF4509 -1.2 -2.2 hypothetical protein compare
GFF3471 -1.2 -2.3 hypothetical protein compare
GFF1169 -1.2 -2.6 Protein RecA compare
GFF113 -1.1 -1.6 hypothetical protein compare
GFF467 -1.1 -2.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF4468 -1.1 -1.4 Vitamin B12 import ATP-binding protein BtuD compare
GFF3140 -1.1 -1.8 hypothetical protein compare
GFF1693 -1.1 -1.7 hypothetical protein compare
GFF2285 -1.1 -2.3 Sensor histidine kinase RegB compare
GFF582 -1.1 -2.1 hypothetical protein compare
GFF2160 -1.1 -2.3 Adaptive-response sensory-kinase SasA compare
GFF4479 -1.1 -4.5 hypothetical protein compare
GFF3172 -1.1 -2.1 hypothetical protein compare
GFF1261 -1.1 -1.1 hypothetical protein compare
GFF3492 -1.1 -1.1 hypothetical protein compare
GFF2953 -1.1 -1.3 hypothetical protein compare
GFF4069 -1.1 -1.8 hypothetical protein compare
GFF4522 -1.1 -3.7 Flagellar transcriptional regulator FtcR compare
GFF1694 -1.1 -2.3 Sulfurtransferase compare
GFF3769 -1.1 -3.3 D-beta-hydroxybutyrate dehydrogenase compare
GFF2405 -1.1 -3.5 hypothetical protein compare
GFF3862 -1.1 -5.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthobacter sp. DMC5 in carbon source experiments

For carbon source Methanol across organisms