Experiment set1S50 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_00335 +1.1 2.0 Magnesium transport protein CorA compare
MPMX19_03934 +1.0 2.7 hypothetical protein compare
MPMX19_02402 +1.0 3.5 hypothetical protein compare
MPMX19_03631 +0.9 1.6 hypothetical protein compare
MPMX19_04449 +0.9 1.6 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_06456 +0.9 2.2 hypothetical protein compare
MPMX19_00046 +0.8 1.7 hypothetical protein compare
MPMX19_03939 +0.8 2.5 Enoyl-CoA-hydratase compare
MPMX19_01978 +0.8 1.6 hypothetical protein compare
MPMX19_06519 +0.8 1.3 HTH-type transcriptional repressor NagR compare
MPMX19_01125 +0.8 2.0 hypothetical protein compare
MPMX19_03072 +0.8 1.2 hypothetical protein compare
MPMX19_06488 +0.7 2.3 Taurine-binding periplasmic protein compare
MPMX19_00764 +0.7 1.3 ECF RNA polymerase sigma factor EcfG compare
MPMX19_04791 +0.7 2.2 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_04743 +0.7 2.6 Formyltransferase/hydrolase complex subunit D compare
MPMX19_02218 +0.7 1.9 hypothetical protein compare
MPMX19_05176 +0.7 1.4 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_00478 +0.7 1.5 putative protein RP812 compare
MPMX19_00334 +0.7 2.2 hypothetical protein compare
MPMX19_02275 +0.7 2.4 hypothetical protein compare
MPMX19_02865 +0.6 2.9 hypothetical protein compare
MPMX19_03123 +0.6 1.6 Citrate lyase acyl carrier protein compare
MPMX19_06569 +0.6 2.2 hypothetical protein compare
MPMX19_00212 +0.6 5.1 Nitrogen fixation regulation protein FixK compare
MPMX19_00890 +0.6 2.2 hypothetical protein compare
MPMX19_06773 +0.6 2.3 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_02531 +0.6 1.7 hypothetical protein compare
MPMX19_03667 +0.6 2.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05581 +0.6 1.0 hypothetical protein compare
MPMX19_05656 +0.6 1.8 HTH-type transcriptional activator RhaR compare
MPMX19_05779 +0.6 1.9 Beta-ketoadipyl-CoA thiolase compare
MPMX19_03846 +0.6 1.5 hypothetical protein compare
MPMX19_06526 +0.6 2.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02778 +0.6 1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06762 +0.6 1.6 Peptide deformylase compare
MPMX19_06907 +0.6 2.1 L-talarate/galactarate dehydratase compare
MPMX19_06917 +0.6 1.7 HTH-type transcriptional regulator PgrR compare
MPMX19_01717 +0.6 2.8 Pyrophosphatase PpaX compare
MPMX19_06272 +0.6 0.9 hypothetical protein compare
MPMX19_06579 +0.6 2.1 Carnitine monooxygenase oxygenase subunit compare
MPMX19_06513 +0.6 3.2 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_04088 +0.6 2.0 Signal recognition particle 54 kDa protein compare
MPMX19_03527 +0.5 2.4 hypothetical protein compare
MPMX19_02816 +0.5 1.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06791 +0.5 3.1 Leucine-responsive regulatory protein compare
MPMX19_02382 +0.5 2.4 hypothetical protein compare
MPMX19_05850 +0.5 1.4 hypothetical protein compare
MPMX19_03819 +0.5 2.5 NADP-reducing hydrogenase subunit HndA compare
MPMX19_01157 +0.5 2.5 hypothetical protein compare
MPMX19_02745 +0.5 1.5 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
MPMX19_00208 +0.5 1.2 hypothetical protein compare
MPMX19_04323 +0.5 1.4 Segregation and condensation protein B compare
MPMX19_03646 +0.5 3.0 Histidinol-phosphate aminotransferase compare
MPMX19_06696 +0.5 1.5 hypothetical protein compare
MPMX19_05201 +0.5 2.4 Hydroxycarboxylate dehydrogenase B compare
MPMX19_02862 +0.5 2.3 hypothetical protein compare
MPMX19_01622 +0.5 2.6 hypothetical protein compare
MPMX19_01643 +0.5 2.8 hypothetical protein compare
MPMX19_02310 +0.5 1.7 hypothetical protein compare
MPMX19_03262 +0.5 1.4 putative HTH-type transcriptional repressor ExuR compare
MPMX19_00207 +0.5 2.6 hypothetical protein compare
MPMX19_03304 +0.5 2.9 Pyridoxal 4-dehydrogenase compare
MPMX19_03085 +0.5 1.4 Hydrogen peroxide-inducible genes activator compare
MPMX19_00370 +0.5 1.7 hypothetical protein compare
MPMX19_06355 +0.5 2.2 hypothetical protein compare
MPMX19_03728 +0.5 1.5 hypothetical protein compare
MPMX19_03549 +0.5 1.8 HTH-type transcriptional regulator PgrR compare
MPMX19_05005 +0.5 2.1 hypothetical protein compare
MPMX19_06746 +0.5 1.0 Chemotaxis protein CheW compare
MPMX19_06381 +0.5 0.7 putative manganese efflux pump MntP compare
MPMX19_01702 +0.5 1.5 Inorganic triphosphatase compare
MPMX19_01609 +0.5 1.7 hypothetical protein compare
MPMX19_05930 +0.5 1.6 Dipeptidyl-peptidase 6 compare
MPMX19_05725 +0.5 1.2 hypothetical protein compare
MPMX19_02875 +0.5 1.1 hypothetical protein compare
MPMX19_04682 +0.5 0.8 hypothetical protein compare
MPMX19_01866 +0.5 1.5 Sulfur carrier protein CysO compare
MPMX19_00010 +0.5 1.8 Transcriptional regulatory protein OmpR compare
MPMX19_03083 +0.5 1.1 hypothetical protein compare
MPMX19_02749 +0.5 1.5 hypothetical protein compare
MPMX19_00258 +0.5 1.3 Protein ImuB compare
MPMX19_02780 +0.5 2.2 hypothetical protein compare
MPMX19_04677 +0.5 2.2 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_05254 +0.5 1.0 Carbon monoxide dehydrogenase small chain compare
MPMX19_05181 +0.5 1.3 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06486 +0.5 2.3 Phenylacetate-coenzyme A ligase compare
MPMX19_06979 +0.5 1.1 hypothetical protein compare
MPMX19_02830 +0.4 2.7 N-carbamoyl-L-amino-acid hydrolase compare
MPMX19_03069 +0.4 1.4 hypothetical protein compare
MPMX19_03427 +0.4 1.3 hypothetical protein compare
MPMX19_04246 +0.4 1.7 hypothetical protein compare
MPMX19_05936 +0.4 1.6 Alpha-galactosidase compare
MPMX19_03786 +0.4 1.8 hypothetical protein compare
MPMX19_05043 +0.4 2.4 hypothetical protein compare
MPMX19_05534 +0.4 1.2 DNA gyrase inhibitor YacG compare
MPMX19_03806 +0.4 1.3 hypothetical protein compare
MPMX19_05143 +0.4 1.1 hypothetical protein compare
MPMX19_06610 +0.4 0.8 hypothetical protein compare
MPMX19_04083 +0.4 2.0 Cytochrome c-type protein SHP compare
MPMX19_03338 +0.4 1.8 hypothetical protein compare
MPMX19_04518 +0.4 1.9 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_06146 +0.4 1.7 hypothetical protein compare
MPMX19_04280 +0.4 1.5 hypothetical protein compare
MPMX19_02063 +0.4 2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04095 +0.4 1.7 hypothetical protein compare
MPMX19_05989 +0.4 1.6 HTH-type transcriptional regulator HdfR compare
MPMX19_04579 +0.4 1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_05082 +0.4 1.4 hypothetical protein compare
MPMX19_01749 +0.4 1.8 hypothetical protein compare
MPMX19_00875 +0.4 1.6 hypothetical protein compare
MPMX19_01012 +0.4 1.5 Cyclic pyranopterin monophosphate synthase compare
MPMX19_02871 +0.4 2.0 HTH-type transcriptional activator RhaR compare
MPMX19_06156 +0.4 1.3 hypothetical protein compare
MPMX19_05717 +0.4 1.9 hypothetical protein compare
MPMX19_06256 +0.4 2.2 hypothetical protein compare
MPMX19_02181 +0.4 1.5 hypothetical protein compare
MPMX19_05622 +0.4 3.0 Sensor histidine kinase RegB compare
MPMX19_00225 +0.4 2.3 hypothetical protein compare
MPMX19_03504 +0.4 1.1 Sulfur carrier protein FdhD compare
MPMX19_03699 +0.4 0.9 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_03868 +0.4 1.8 Xylitol-binding protein compare
MPMX19_03306 +0.4 1.6 hypothetical protein compare
MPMX19_01274 +0.4 2.1 hypothetical protein compare
MPMX19_02189 +0.4 2.5 hypothetical protein compare
MPMX19_03445 +0.4 2.2 hypothetical protein compare
MPMX19_04267 +0.4 1.5 hypothetical protein compare
MPMX19_04534 +0.4 2.5 Multidrug export protein MepA compare
MPMX19_00068 +0.4 2.2 hypothetical protein compare
MPMX19_06510 +0.4 1.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_01600 +0.4 2.2 hypothetical protein compare
MPMX19_00206 +0.4 2.9 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_06789 +0.4 0.9 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX19_03707 +0.4 0.9 L-cystine import ATP-binding protein TcyC compare
MPMX19_02835 +0.4 1.5 Phosphoribosyl-dephospho-CoA transferase compare
MPMX19_01761 +0.4 2.0 Bacteriohemerythrin compare
MPMX19_06263 +0.4 1.5 hypothetical protein compare
MPMX19_05195 +0.4 1.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03884 +0.4 1.8 hypothetical protein compare
MPMX19_02308 +0.4 2.0 hypothetical protein compare
MPMX19_06516 +0.4 2.5 D-methionine-binding lipoprotein MetQ compare
MPMX19_06944 +0.4 2.2 Fatty acid oxidation complex subunit alpha compare
MPMX19_00344 +0.4 1.1 hypothetical protein compare
MPMX19_00725 +0.4 2.2 Transcriptional regulatory protein ros compare
MPMX19_00204 +0.4 1.9 hypothetical protein compare
MPMX19_06646 +0.4 2.0 hypothetical protein compare
MPMX19_01983 +0.4 1.7 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
MPMX19_05470 +0.4 1.2 hypothetical protein compare
MPMX19_02880 +0.4 1.8 hypothetical protein compare
MPMX19_06807 +0.4 2.0 Solute-binding protein compare
MPMX19_04531 +0.4 1.4 hypothetical protein compare
MPMX19_02206 +0.4 2.5 hypothetical protein compare
MPMX19_03374 +0.4 1.9 Alpha-hemolysin translocation ATP-binding protein HlyB compare
MPMX19_01956 +0.4 1.9 hypothetical protein compare
MPMX19_02532 +0.4 1.1 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_03340 +0.4 1.3 hypothetical protein compare
MPMX19_00044 +0.4 1.5 hypothetical protein compare
MPMX19_03755 +0.4 2.3 Copper transport protein YcnJ compare
MPMX19_05798 +0.4 1.0 HTH-type transcriptional repressor NanR compare
MPMX19_04913 +0.4 0.8 hypothetical protein compare
MPMX19_03462 +0.4 1.4 Acetate CoA-transferase subunit alpha compare
MPMX19_06471 +0.4 1.4 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_05096 +0.4 1.3 L-cystine import ATP-binding protein TcyC compare
MPMX19_05364 +0.4 1.9 Acetate CoA-transferase subunit beta compare
MPMX19_02076 +0.4 2.2 Carnitine operon protein CaiE compare
MPMX19_00414 +0.4 1.1 Pyruvate dehydrogenase complex repressor compare
MPMX19_02787 +0.4 1.4 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_02608 +0.4 1.6 hypothetical protein compare
MPMX19_05901 +0.4 1.2 Motility protein B compare
MPMX19_00747 +0.4 1.4 Organic hydroperoxide resistance protein OhrB compare
MPMX19_03862 +0.4 1.5 hypothetical protein compare
MPMX19_01870 +0.4 1.5 hypothetical protein compare
MPMX19_04508 +0.4 1.6 Phosphoglycolate phosphatase compare
MPMX19_06853 +0.4 1.3 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_04240 +0.4 0.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03308 +0.4 1.5 hypothetical protein compare
MPMX19_03757 +0.4 1.3 D-ribose pyranase compare
MPMX19_02500 +0.4 2.0 Endonuclease III compare
MPMX19_05459 +0.4 0.8 hypothetical protein compare
MPMX19_04271 +0.4 1.0 Response regulator rcp1 compare
MPMX19_03113 +0.3 1.8 hypothetical protein compare
MPMX19_06886 +0.3 1.7 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02761 +0.3 2.3 hypothetical protein compare
MPMX19_04680 +0.3 1.2 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_03816 +0.3 0.7 hypothetical protein compare
MPMX19_05014 +0.3 1.0 Cytochrome c1 compare
MPMX19_05011 +0.3 1.5 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_00822 +0.3 2.1 Divalent metal cation transporter MntH compare
MPMX19_01624 +0.3 1.8 hypothetical protein compare
MPMX19_06915 +0.3 2.0 Putative acyl-CoA dehydrogenase FadE17 compare
MPMX19_03937 +0.3 1.6 Acyl-CoA dehydrogenase compare
MPMX19_01832 +0.3 1.1 hypothetical protein compare
MPMX19_00263 +0.3 0.8 hypothetical protein compare
MPMX19_02795 +0.3 1.8 Homoaconitase large subunit compare
MPMX19_04505 +0.3 1.4 Aliphatic amidase regulator compare
MPMX19_04149 +0.3 1.0 hypothetical protein compare
MPMX19_02735 +0.3 0.8 Sensor histidine kinase RcsC compare
MPMX19_00978 +0.3 0.9 hypothetical protein compare
MPMX19_04687 +0.3 1.0 Atrazine chlorohydrolase compare
MPMX19_04995 +0.3 1.6 D-alanine aminotransferase compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms