Experiment set1S499 for Alteromonas macleodii MIT1002

Compare to:

monoculture; Experiment C, time point 5

200 most important genes:

  gene name fitness t score description  
MIT1002_02348 -5.3 -3.7 hypothetical protein compare
MIT1002_03690 -5.3 -3.7 DnaK suppressor protein compare
MIT1002_00471 -5.2 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_01027 -5.1 -3.6 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00504 -5.1 -3.5 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_02524 -5.1 -3.5 Amidophosphoribosyltransferase compare
MIT1002_00948 -5.1 -3.5 3-isopropylmalate dehydrogenase compare
MIT1002_01263 -5.1 -3.5 7-cyano-7-deazaguanine synthase compare
MIT1002_03791 -5.0 -6.9 N-acetylmuramoyl-L-alanine amidase AmiB precursor compare
MIT1002_01382 -5.0 -3.5 ATP-dependent dethiobiotin synthetase BioD 1 compare
MIT1002_00949 -5.0 -3.5 2-isopropylmalate synthase compare
MIT1002_02636 -5.0 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02008 -5.0 -3.4 Para-aminobenzoate synthase component 1 compare
MIT1002_04045 -4.9 -3.4 Ketol-acid reductoisomerase compare
MIT1002_00946 -4.9 -3.4 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_00469 -4.9 -3.4 Ornithine carbamoyltransferase compare
MIT1002_01112 -4.8 -3.3 Homoserine O-succinyltransferase compare
MIT1002_03139 -4.8 -3.3 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00760 -4.8 -3.3 Biopolymer transport protein ExbD compare
MIT1002_02220 -4.8 -3.3 Phosphoribosylglycinamide formyltransferase compare
MIT1002_00742 -4.8 -3.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
MIT1002_02219 -4.8 -3.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_03179 -4.8 -3.3 Cystathionine beta-lyase PatB compare
MIT1002_00761 -4.7 -3.3 transport protein TonB compare
MIT1002_01119 -4.7 -3.2 HTH-type transcriptional regulator GltC compare
MIT1002_00377 -4.7 -3.2 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00762 -4.7 -3.2 Anaphase-promoting complex, cyclosome, subunit 3 compare
MIT1002_00522 -4.7 -3.2 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_00673 -4.7 -7.1 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MIT1002_02349 -4.6 -3.2 2-hydroxypropyl-CoM lyase compare
MIT1002_02125 -4.6 -3.2 Inner membrane protein YbaL compare
MIT1002_03086 -4.6 -3.2 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_03961 -4.6 -3.2 Phosphoribosylamine--glycine ligase compare
MIT1002_04040 -4.6 -3.2 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_01266 -4.6 -3.2 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_00756 -4.5 -5.4 TonB-dependent receptor compare
MIT1002_03015 -4.5 -3.1 aspartoacylase compare
MIT1002_02638 -4.5 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_02639 -4.5 -3.1 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_00947 -4.5 -3.1 3-isopropylmalate dehydratase large subunit compare
MIT1002_00758 -4.5 -3.1 Biopolymer transport protein ExbB compare
MIT1002_02266 -4.5 -3.1 Methionine gamma-lyase compare
MIT1002_00467 -4.5 -3.1 Argininosuccinate lyase compare
MIT1002_00439 -4.4 -3.1 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_02993 -4.4 -3.0 D-3-phosphoglycerate dehydrogenase compare
MIT1002_00759 -4.4 -3.0 protein TolQ compare
MIT1002_02634 -4.4 -3.0 Histidinol-phosphate aminotransferase compare
MIT1002_00468 -4.4 -3.0 Argininosuccinate synthase compare
MIT1002_02633 -4.3 -3.0 Histidinol dehydrogenase compare
MIT1002_02702 -4.3 -3.0 Serine hydroxymethyltransferase compare
MIT1002_04044 -4.3 -3.0 HTH-type transcriptional regulator GltC compare
MIT1002_00466 -4.3 -3.0 Amino-acid acetyltransferase compare
MIT1002_03140 -4.3 -3.0 Glutamate synthase [NADPH] small chain compare
MIT1002_02635 -4.3 -3.0 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_00096 -4.3 -4.2 Thiamine-phosphate synthase compare
MIT1002_00757 -4.3 -3.0 hypothetical protein compare
MIT1002_01466 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
MIT1002_03539 -4.2 -2.4 Bifunctional protein BirA compare
MIT1002_02708 -4.1 -2.9 Phosphoserine phosphatase compare
MIT1002_01467 -4.1 -2.9 Carbamoyl-phosphate synthase large chain compare
MIT1002_04041 -4.1 -2.9 Dihydroxy-acid dehydratase compare
MIT1002_01736 -4.1 -2.8 Aminodeoxychorismate lyase compare
MIT1002_03084 -4.1 -2.8 Threonine synthase compare
MIT1002_03185 -4.0 -4.8 Nitrogen regulation protein NR(II) compare
MIT1002_00503 -4.0 -2.8 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_01885 -4.0 -2.8 Gamma-glutamyl phosphate reductase compare
MIT1002_01984 -4.0 -2.7 queuosine biosynthesis protein QueD compare
MIT1002_01379 -4.0 -5.4 Biotin synthase compare
MIT1002_03904 -4.0 -6.6 Beta-lactamase precursor compare
MIT1002_00068 -3.9 -3.8 Chorismate--pyruvate lyase compare
MIT1002_00470 -3.9 -9.5 Acetylglutamate kinase compare
MIT1002_00093 -3.9 -8.8 Thiazole synthase compare
MIT1002_01264 -3.9 -2.7 7-carboxy-7-deazaguanine synthase compare
MIT1002_00160 -3.9 -2.7 Diaminopimelate decarboxylase compare
MIT1002_01380 -3.9 -3.8 8-amino-7-oxononanoate synthase compare
MIT1002_03062 -3.9 -2.7 Pyrroline-5-carboxylate reductase compare
MIT1002_02637 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_01428 -3.9 -2.7 Anthranilate synthase component II compare
MIT1002_01429 -3.9 -2.7 Anthranilate synthase component II compare
MIT1002_00161 -3.9 -2.7 putative small periplasmic lipoprotein compare
MIT1002_02306 -3.8 -3.7 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_04026 -3.7 -2.6 BsSco compare
MIT1002_03085 -3.7 -2.6 Homoserine kinase compare
MIT1002_00437 -3.7 -2.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_00095 -3.7 -5.1 Molybdopterin-synthase adenylyltransferase compare
MIT1002_01378 -3.6 -4.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
MIT1002_03331 -3.6 -4.3 D-lactate dehydrogenase compare
MIT1002_00097 -3.6 -13.0 Phosphomethylpyrimidine synthase compare
MIT1002_00404 -3.5 -5.4 Formyltetrahydrofolate deformylase compare
MIT1002_01981 -3.5 -2.4 Inner membrane protein YejM compare
MIT1002_00843 -3.5 -3.4 hypothetical protein compare
MIT1002_01352 -3.5 -8.1 Aspartate-semialdehyde dehydrogenase compare
MIT1002_00988 -3.5 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_01001 -3.4 -3.4 PII uridylyl-transferase compare
MIT1002_02041 -3.4 -2.0 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase compare
MIT1002_01923 -3.4 -6.5 Cell division protein ZipA compare
MIT1002_01316 -3.4 -2.3 P-protein compare
MIT1002_01430 -3.4 -2.3 Anthranilate synthase component 1 compare
MIT1002_01508 -3.4 -6.4 hypothetical protein compare
MIT1002_01544 -3.4 -3.3 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_02404 -3.3 -4.0 Glucokinase compare
MIT1002_03186 -3.3 -2.3 Nitrogen regulation protein NR(I) compare
MIT1002_00755 -3.3 -13.4 hypothetical protein compare
MIT1002_01381 -3.2 -9.8 Malonyl-CoA O-methyltransferase BioC compare
MIT1002_00943 -3.2 -11.2 putative secretion ATPase, PEP-CTERM locus subfamily compare
MIT1002_00113 -3.2 -6.7 Putative peroxiredoxin compare
MIT1002_01129 -3.2 -2.2 Carbon storage regulator compare
MIT1002_01132 -3.2 -1.1 tRNA-Arg compare
MIT1002_02632 -3.1 -2.2 ATP phosphoribosyltransferase compare
MIT1002_00092 -3.1 -4.7 2-iminoacetate synthase compare
MIT1002_00109 -3.1 -8.2 Putative reactive intermediate deaminase TdcF compare
MIT1002_00879 -3.1 -6.2 Universal stress protein E compare
MIT1002_02525 -3.1 -3.6 Pur regulon 18 kDa protein compare
MIT1002_03908 -3.1 -8.3 NAD(P) transhydrogenase subunit alpha compare
MIT1002_00486 -3.0 -1.0 Protein-export protein SecB compare
MIT1002_00094 -3.0 -1.0 sulfur carrier protein ThiS compare
MIT1002_03033 -3.0 -2.1 Ribosomal RNA small subunit methyltransferase H compare
MIT1002_01235 -2.9 -2.0 Monothiol glutaredoxin compare
MIT1002_01929 -2.9 -1.0 Trm112p-like protein compare
MIT1002_02653 -2.9 -1.4 Nucleoid-associated protein YbaB compare
MIT1002_03491 -2.9 -14.3 Phosphoenolpyruvate carboxylase compare
MIT1002_01131 -2.9 -1.0 tRNA-Arg compare
MIT1002_04134 -2.9 -10.2 Sporulation initiation inhibitor protein soj compare
MIT1002_01217 -2.9 -2.8 2-dehydropantoate 2-reductase compare
MIT1002_03616 -2.9 -2.0 NAD(P)H-flavin reductase compare
MIT1002_01526 -2.8 -0.9 putative transposase OrfB compare
MIT1002_00423 -2.8 -1.9 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_01816 -2.8 -15.8 Phosphoenolpyruvate synthase compare
MIT1002_02991 -2.8 -2.7 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_02760 -2.8 -1.9 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_01427 -2.8 -1.9 Tryptophan biosynthesis protein TrpCF compare
MIT1002_03907 -2.8 -9.9 NAD(P) transhydrogenase subunit beta compare
MIT1002_00521 -2.7 -1.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_01361 -2.7 -2.6 Rut operon repressor compare
MIT1002_03853 -2.7 -6.0 TonB-dependent copper receptor compare
MIT1002_00672 -2.6 -5.6 putative dehydrogenase compare
MIT1002_00827 -2.6 -1.8 RNA polymerase sigma-54 factor 2 compare
MIT1002_00825 -2.6 -3.2 Nitrogen regulatory protein compare
MIT1002_04092 -2.6 -1.8 putative type I restriction enzymeP M protein compare
MIT1002_00968 -2.6 -3.5 Cytochrome c-type biogenesis protein CcmH precursor compare
MIT1002_02184 -2.6 -1.7 Orotidine 5'-phosphate decarboxylase compare
MIT1002_02035 -2.6 -1.5 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_03200 -2.6 -4.6 RDD family protein compare
MIT1002_00107 -2.5 -2.8 DNA-directed RNA polymerase subunit omega compare
MIT1002_02400 -2.5 -7.6 4-alpha-glucanotransferase compare
MIT1002_02759 -2.5 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_00076 -2.5 -2.4 transcriptional regulator, y4mF family compare
MIT1002_00154 -2.5 -5.8 Serine acetyltransferase compare
MIT1002_04036 -2.5 -1.7 LexA repressor compare
MIT1002_01840 -2.4 -7.8 Protease 4 compare
MIT1002_02429 -2.4 -8.0 Glucose-resistance amylase regulator compare
MIT1002_02246 -2.4 -1.1 hypothetical protein compare
MIT1002_02130 -2.4 -1.6 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_00932 -2.3 -1.8 holin-like protein compare
MIT1002_02128 -2.3 -1.6 hypothetical protein compare
MIT1002_01345 -2.3 -1.5 tRNA-Ser compare
MIT1002_02673 -2.3 -9.1 L-lactate permease compare
MIT1002_00944 -2.2 -6.6 hypothetical protein compare
MIT1002_02137 -2.2 -9.1 Fumarate and nitrate reduction regulatory protein compare
MIT1002_01853 -2.2 -1.1 Ribosomal silencing factor RsfS compare
MIT1002_00872 -2.2 -8.1 Polyphosphate kinase compare
MIT1002_04122 -2.2 -2.6 Sporulation initiation inhibitor protein soj compare
MIT1002_02390 -2.2 -3.0 hypothetical protein compare
MIT1002_02810 -2.2 -7.2 preprotein translocase subunit SecF compare
MIT1002_03488 -2.2 -1.5 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_04011 -2.2 -3.3 Transcript cleavage factor GreB compare
MIT1002_03371 -2.2 -3.1 HTH-type transcriptional repressor FabR compare
MIT1002_00955 -2.2 -2.1 Recombinase A compare
MIT1002_03329 -2.2 -7.0 D-malate degradation protein R compare
MIT1002_02573 -2.2 -5.5 hypothetical protein compare
MIT1002_03788 -2.2 -2.9 Host factor-I protein compare
MIT1002_02489 -2.1 -3.8 Deoxycytidine triphosphate deaminase compare
MIT1002_02129 -2.1 -1.5 hypothetical protein compare
MIT1002_00235 -2.1 -1.4 Glycogen synthase compare
MIT1002_00012 -2.1 -1.4 Cytochrome c4 precursor compare
MIT1002_03686 -2.1 -1.0 hypothetical protein compare
MIT1002_02679 -2.1 -1.4 Ribosomal large subunit pseudouridine synthase D compare
MIT1002_03330 -2.1 -5.4 L-lactate dehydrogenase [cytochrome] compare
MIT1002_01292 -2.1 -3.7 Phosphohistidine phosphatase SixA compare
MIT1002_02133 -2.1 -1.4 putative integral membrane protein linked to a cation pump compare
MIT1002_02136 -2.0 -1.4 hypothetical protein compare
MIT1002_04093 -2.0 -0.9 Type I restriction modification DNA specificity domain protein compare
MIT1002_04135 -2.0 -7.2 ParB/RepB/Spo0J family partition protein compare
MIT1002_01143 -2.0 -3.3 Phage shock protein A compare
MIT1002_00100 -2.0 -6.4 Putative uroporphyrinogen-III C-methyltransferase compare
MIT1002_03698 -1.9 -4.1 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_03408 -1.9 -0.9 hypothetical protein compare
MIT1002_02261 -1.9 -4.6 rhombosortase compare
MIT1002_00826 -1.9 -1.8 Ribosome hibernation promoting factor compare
MIT1002_02538 -1.9 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase 1 compare
MIT1002_00070 -1.9 -0.9 Membrane fusogenic activity compare
MIT1002_02581 -1.9 -1.3 Disulfide oxidoreductase compare
MIT1002_03993 -1.8 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MIT1002_00524 -1.8 -3.1 hypothetical protein compare
MIT1002_03137 -1.8 -1.3 Aerobic respiration control sensor protein ArcB compare
MIT1002_00180 -1.8 -5.6 Inner membrane transport protein YajR compare
MIT1002_01830 -1.8 -5.4 Isocitrate dehydrogenase [NADP] 2 compare
MIT1002_01925 -1.8 -1.0 hypothetical protein compare
MIT1002_02397 -1.8 -9.7 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating compare
MIT1002_03082 -1.8 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in pro99_seawater experiments