Experiment set1S498 for Alteromonas macleodii MIT1002

Compare to:

monoculture; Experiment C, time point 4

200 most important genes:

  gene name fitness t score description  
MIT1002_02348 -6.6 -4.5 hypothetical protein compare
MIT1002_03690 -6.5 -4.5 DnaK suppressor protein compare
MIT1002_00471 -6.4 -4.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_02524 -6.3 -4.4 Amidophosphoribosyltransferase compare
MIT1002_00504 -6.3 -4.4 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_01027 -6.2 -4.3 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00948 -6.2 -4.3 3-isopropylmalate dehydrogenase compare
MIT1002_01263 -6.2 -4.3 7-cyano-7-deazaguanine synthase compare
MIT1002_02636 -6.2 -4.3 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_04045 -6.1 -4.2 Ketol-acid reductoisomerase compare
MIT1002_00949 -6.1 -4.2 2-isopropylmalate synthase compare
MIT1002_00469 -6.0 -4.2 Ornithine carbamoyltransferase compare
MIT1002_03139 -6.0 -4.2 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00946 -6.0 -4.1 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_02220 -6.0 -4.1 Phosphoribosylglycinamide formyltransferase compare
MIT1002_01112 -6.0 -4.1 Homoserine O-succinyltransferase compare
MIT1002_02219 -6.0 -4.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_03179 -6.0 -4.1 Cystathionine beta-lyase PatB compare
MIT1002_02008 -6.0 -7.1 Para-aminobenzoate synthase component 1 compare
MIT1002_00761 -5.9 -4.1 transport protein TonB compare
MIT1002_00377 -5.8 -4.0 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00522 -5.8 -4.0 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02349 -5.8 -4.0 2-hydroxypropyl-CoM lyase compare
MIT1002_01119 -5.8 -4.0 HTH-type transcriptional regulator GltC compare
MIT1002_03086 -5.8 -4.0 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_01266 -5.8 -4.0 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_03961 -5.8 -4.0 Phosphoribosylamine--glycine ligase compare
MIT1002_04040 -5.8 -4.0 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_03015 -5.7 -4.0 aspartoacylase compare
MIT1002_02639 -5.7 -3.9 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_00673 -5.7 -12.2 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MIT1002_02266 -5.7 -3.9 Methionine gamma-lyase compare
MIT1002_02125 -5.7 -5.5 Inner membrane protein YbaL compare
MIT1002_00467 -5.6 -3.9 Argininosuccinate lyase compare
MIT1002_00947 -5.6 -3.9 3-isopropylmalate dehydratase large subunit compare
MIT1002_00756 -5.6 -7.7 TonB-dependent receptor compare
MIT1002_02993 -5.6 -3.9 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02634 -5.6 -3.8 Histidinol-phosphate aminotransferase compare
MIT1002_00468 -5.5 -3.8 Argininosuccinate synthase compare
MIT1002_02702 -5.5 -3.8 Serine hydroxymethyltransferase compare
MIT1002_02633 -5.5 -3.8 Histidinol dehydrogenase compare
MIT1002_00759 -5.5 -3.7 protein TolQ compare
MIT1002_04044 -5.5 -3.8 HTH-type transcriptional regulator GltC compare
MIT1002_00762 -5.5 -9.9 Anaphase-promoting complex, cyclosome, subunit 3 compare
MIT1002_03140 -5.5 -3.8 Glutamate synthase [NADPH] small chain compare
MIT1002_02635 -5.5 -3.8 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_00466 -5.5 -3.8 Amino-acid acetyltransferase compare
MIT1002_02638 -5.4 -5.3 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_03539 -5.4 -2.6 Bifunctional protein BirA compare
MIT1002_01466 -5.4 -3.7 Carbamoyl-phosphate synthase small chain compare
MIT1002_02708 -5.4 -3.7 Phosphoserine phosphatase compare
MIT1002_00757 -5.3 -5.2 hypothetical protein compare
MIT1002_00758 -5.3 -8.9 Biopolymer transport protein ExbB compare
MIT1002_04041 -5.3 -3.7 Dihydroxy-acid dehydratase compare
MIT1002_01467 -5.3 -3.7 Carbamoyl-phosphate synthase large chain compare
MIT1002_01736 -5.3 -3.6 Aminodeoxychorismate lyase compare
MIT1002_03084 -5.3 -3.6 Threonine synthase compare
MIT1002_00439 -5.2 -6.2 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_01380 -5.2 -3.6 8-amino-7-oxononanoate synthase compare
MIT1002_01379 -5.2 -7.1 Biotin synthase compare
MIT1002_01885 -5.2 -3.6 Gamma-glutamyl phosphate reductase compare
MIT1002_00068 -5.2 -6.2 Chorismate--pyruvate lyase compare
MIT1002_00503 -5.2 -3.6 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_01984 -5.2 -3.6 queuosine biosynthesis protein QueD compare
MIT1002_03062 -5.1 -3.5 Pyrroline-5-carboxylate reductase compare
MIT1002_01264 -5.1 -3.5 7-carboxy-7-deazaguanine synthase compare
MIT1002_00160 -5.1 -3.5 Diaminopimelate decarboxylase compare
MIT1002_02637 -5.1 -3.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_01428 -5.0 -3.5 Anthranilate synthase component II compare
MIT1002_01429 -5.0 -3.5 Anthranilate synthase component II compare
MIT1002_00161 -5.0 -3.4 putative small periplasmic lipoprotein compare
MIT1002_00760 -5.0 -3.9 Biopolymer transport protein ExbD compare
MIT1002_03791 -5.0 -13.6 N-acetylmuramoyl-L-alanine amidase AmiB precursor compare
MIT1002_01382 -4.9 -14.9 ATP-dependent dethiobiotin synthetase BioD 1 compare
MIT1002_03085 -4.9 -3.4 Homoserine kinase compare
MIT1002_00437 -4.9 -3.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_00093 -4.8 -15.5 Thiazole synthase compare
MIT1002_01981 -4.7 -3.2 Inner membrane protein YejM compare
MIT1002_00825 -4.6 -5.5 Nitrogen regulatory protein compare
MIT1002_00470 -4.6 -8.8 Acetylglutamate kinase compare
MIT1002_00988 -4.6 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_02306 -4.6 -5.5 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_02041 -4.6 -2.2 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase compare
MIT1002_01316 -4.6 -3.2 P-protein compare
MIT1002_01430 -4.5 -3.1 Anthranilate synthase component 1 compare
MIT1002_03186 -4.5 -3.1 Nitrogen regulation protein NR(I) compare
MIT1002_01352 -4.5 -14.1 Aspartate-semialdehyde dehydrogenase compare
MIT1002_01378 -4.5 -9.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
MIT1002_00097 -4.5 -18.4 Phosphomethylpyrimidine synthase compare
MIT1002_00096 -4.4 -15.0 Thiamine-phosphate synthase compare
MIT1002_00742 -4.4 -8.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
MIT1002_00843 -4.4 -6.0 hypothetical protein compare
MIT1002_01129 -4.3 -2.6 Carbon storage regulator compare
MIT1002_00095 -4.3 -8.8 Molybdopterin-synthase adenylyltransferase compare
MIT1002_02632 -4.3 -3.0 ATP phosphoribosyltransferase compare
MIT1002_03185 -4.2 -10.4 Nitrogen regulation protein NR(II) compare
MIT1002_00092 -4.1 -8.4 2-iminoacetate synthase compare
MIT1002_00404 -4.1 -9.2 Formyltetrahydrofolate deformylase compare
MIT1002_01235 -4.1 -2.8 Monothiol glutaredoxin compare
MIT1002_03616 -4.0 -2.8 NAD(P)H-flavin reductase compare
MIT1002_01381 -4.0 -11.6 Malonyl-CoA O-methyltransferase BioC compare
MIT1002_03331 -4.0 -7.7 D-lactate dehydrogenase compare
MIT1002_00423 -3.9 -2.7 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_01427 -3.9 -2.6 Tryptophan biosynthesis protein TrpCF compare
MIT1002_00521 -3.9 -2.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_01001 -3.9 -7.0 PII uridylyl-transferase compare
MIT1002_01508 -3.8 -8.4 hypothetical protein compare
MIT1002_04092 -3.8 -2.6 putative type I restriction enzymeP M protein compare
MIT1002_00094 -3.7 -1.0 sulfur carrier protein ThiS compare
MIT1002_02184 -3.7 -2.1 Orotidine 5'-phosphate decarboxylase compare
MIT1002_00827 -3.7 -2.4 RNA polymerase sigma-54 factor 2 compare
MIT1002_02035 -3.7 -1.8 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_02759 -3.7 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_00076 -3.7 -3.5 transcriptional regulator, y4mF family compare
MIT1002_01929 -3.7 -1.0 Trm112p-like protein compare
MIT1002_02404 -3.6 -7.7 Glucokinase compare
MIT1002_02760 -3.6 -3.5 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_03330 -3.6 -8.6 L-lactate dehydrogenase [cytochrome] compare
MIT1002_02130 -3.5 -1.9 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_01676 -3.5 -1.0 Exodeoxyribonuclease I compare
MIT1002_02929 -3.5 -1.7 Lactoylglutathione lyase compare
MIT1002_00109 -3.5 -13.4 Putative reactive intermediate deaminase TdcF compare
MIT1002_01345 -3.4 -1.9 tRNA-Ser compare
MIT1002_03491 -3.4 -18.6 Phosphoenolpyruvate carboxylase compare
MIT1002_03788 -3.4 -3.9 Host factor-I protein compare
MIT1002_01816 -3.4 -16.9 Phosphoenolpyruvate synthase compare
MIT1002_03904 -3.4 -11.5 Beta-lactamase precursor compare
MIT1002_00074 -3.4 -2.3 tRNA-Arg compare
MIT1002_00235 -3.3 -2.1 Glycogen synthase compare
MIT1002_00012 -3.2 -2.2 Cytochrome c4 precursor compare
MIT1002_01923 -3.2 -8.1 Cell division protein ZipA compare
MIT1002_03033 -3.2 -3.4 Ribosomal RNA small subunit methyltransferase H compare
MIT1002_02129 -3.1 -3.0 hypothetical protein compare
MIT1002_00879 -3.1 -8.9 Universal stress protein E compare
MIT1002_02538 -3.1 -1.7 3-oxoacyl-[acyl-carrier-protein] synthase 1 compare
MIT1002_04036 -3.0 -3.0 LexA repressor compare
MIT1002_02581 -3.0 -2.1 Disulfide oxidoreductase compare
MIT1002_01925 -3.0 -1.4 hypothetical protein compare
MIT1002_03488 -3.0 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_02679 -2.9 -2.8 Ribosomal large subunit pseudouridine synthase D compare
MIT1002_04134 -2.9 -13.5 Sporulation initiation inhibitor protein soj compare
MIT1002_00755 -2.9 -10.7 hypothetical protein compare
MIT1002_00751 -2.9 -1.8 Phosphate regulon transcriptional regulatory protein PhoB compare
MIT1002_02136 -2.9 -3.4 hypothetical protein compare
MIT1002_03978 -2.9 -2.0 General secretion pathway protein F compare
MIT1002_03484 -2.8 -1.5 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_03137 -2.8 -2.7 Aerobic respiration control sensor protein ArcB compare
MIT1002_03979 -2.8 -1.3 Pullulanase secretion protein PulG compare
MIT1002_04026 -2.7 -6.7 BsSco compare
MIT1002_00815 -2.7 -1.9 Cytochrome b/c1 compare
MIT1002_00627 -2.7 -2.1 Inner membrane protein YqaA compare
MIT1002_03055 -2.7 -1.9 Glutathione synthetase compare
MIT1002_00154 -2.7 -12.1 Serine acetyltransferase compare
MIT1002_04093 -2.7 -1.0 Type I restriction modification DNA specificity domain protein compare
MIT1002_03977 -2.7 -1.9 Type II traffic warden ATPase compare
MIT1002_00233 -2.7 -1.9 Dye resistance protein compare
MIT1002_00014 -2.7 -7.8 DNA polymerase I compare
MIT1002_02134 -2.7 -3.2 putative copper-importing P-type ATPase A compare
MIT1002_03908 -2.7 -9.5 NAD(P) transhydrogenase subunit alpha compare
MIT1002_00115 -2.7 -1.5 Iron(III)-binding periplasmic protein compare
MIT1002_00113 -2.6 -5.5 Putative peroxiredoxin compare
MIT1002_01515 -2.6 -4.3 Release factor glutamine methyltransferase compare
MIT1002_02991 -2.6 -4.9 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_02573 -2.6 -7.9 hypothetical protein compare
MIT1002_03485 -2.6 -1.7 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_00943 -2.6 -10.6 putative secretion ATPase, PEP-CTERM locus subfamily compare
MIT1002_02132 -2.6 -1.7 Cytochrome c oxidase subunit III compare
MIT1002_03980 -2.6 -1.8 General secretion pathway protein H compare
MIT1002_02391 -2.5 -1.0 putative membrane protein compare
MIT1002_02406 -2.5 -1.7 6-phosphogluconolactonase compare
MIT1002_03982 -2.5 -1.7 PilD-dependent protein PddD compare
MIT1002_00683 -2.5 -3.0 Elongation factor P--(R)-beta-lysine ligase compare
MIT1002_00814 -2.5 -2.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_02128 -2.5 -3.4 hypothetical protein compare
MIT1002_04135 -2.5 -11.9 ParB/RepB/Spo0J family partition protein compare
MIT1002_00114 -2.5 -1.5 hypothetical protein compare
MIT1002_02407 -2.4 -2.3 Glucose-6-phosphate 1-dehydrogenase compare
MIT1002_00032 -2.4 -1.9 16S ribosomal RNA compare
MIT1002_01299 -2.4 -1.8 hypothetical protein compare
MIT1002_03981 -2.4 -1.3 Putative general secretion pathway protein I compare
MIT1002_03200 -2.3 -7.1 RDD family protein compare
MIT1002_02429 -2.3 -9.0 Glucose-resistance amylase regulator compare
MIT1002_03985 -2.3 -1.6 General secretion pathway protein M compare
MIT1002_01217 -2.3 -4.9 2-dehydropantoate 2-reductase compare
MIT1002_02525 -2.3 -4.0 Pur regulon 18 kDa protein compare
MIT1002_02394 -2.3 -7.0 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_00100 -2.3 -8.6 Putative uroporphyrinogen-III C-methyltransferase compare
MIT1002_00117 -2.3 -1.5 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03976 -2.3 -1.6 Pullulanase secretion envelope PulD compare
MIT1002_01497 -2.3 -0.9 tRNA-Met compare
MIT1002_02673 -2.3 -10.9 L-lactate permease compare
MIT1002_02137 -2.2 -9.2 Fumarate and nitrate reduction regulatory protein compare
MIT1002_02489 -2.2 -4.4 Deoxycytidine triphosphate deaminase compare
MIT1002_00816 -2.2 -2.2 Cytochrome c1 precursor compare
MIT1002_00944 -2.2 -9.4 hypothetical protein compare
MIT1002_03907 -2.2 -10.0 NAD(P) transhydrogenase subunit beta compare
MIT1002_01840 -2.2 -10.1 Protease 4 compare
MIT1002_03909 -2.2 -6.6 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_02895 -2.2 -2.7 hypothetical protein compare
MIT1002_00752 -2.2 -1.5 Phosphate regulon sensor protein PhoR compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in pro99_seawater experiments