Experiment set1S491 for Paraburkholderia sabiae LMG 24235

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
QEN71_RS27825 -6.0 -5.8 phosphoribosyl-ATP diphosphatase compare
QEN71_RS27005 -5.7 -6.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS01445 -5.0 -6.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS17850 -4.9 -6.7 homoserine kinase compare
QEN71_RS28035 -4.9 -13.5 3-dehydroquinate synthase compare
QEN71_RS24970 -4.9 -8.1 argininosuccinate lyase compare
QEN71_RS06040 -4.8 -17.8 potassium transporter Kup compare
QEN71_RS04710 -4.7 -15.4 trehalose-phosphatase compare
QEN71_RS27865 -4.7 -15.6 histidinol dehydrogenase compare
QEN71_RS27870 -4.7 -19.8 ATP phosphoribosyltransferase compare
QEN71_RS02425 -4.7 -3.2 phosphoglycerate kinase compare
QEN71_RS28715 -4.7 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
QEN71_RS27565 -4.6 -8.3 indole-3-glycerol phosphate synthase TrpC compare
QEN71_RS01465 -4.6 -23.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS28010 -4.6 -25.3 glutamate synthase-related protein compare
QEN71_RS27845 -4.6 -15.4 imidazole glycerol phosphate synthase subunit HisH compare
QEN71_RS01990 -4.5 -25.9 FAD/FMN-binding oxidoreductase compare
QEN71_RS06025 -4.5 -16.5 ATP phosphoribosyltransferase regulatory subunit compare
QEN71_RS00235 -4.5 -1.8 rod shape-determining protein MreD compare
QEN71_RS17655 -4.5 -13.2 tryptophan synthase subunit alpha compare
QEN71_RS01460 -4.4 -15.0 protein-export chaperone SecB compare
QEN71_RS00290 -4.4 -18.9 homoserine O-acetyltransferase compare
QEN71_RS26460 -4.3 -6.6 HAD family hydrolase compare
QEN71_RS25730 -4.3 -3.0 ABC transporter permease compare
QEN71_RS05215 -4.2 -14.0 chorismate synthase compare
QEN71_RS27550 -4.2 -23.6 anthranilate synthase component I compare
QEN71_RS22405 -4.2 -18.9 homoserine dehydrogenase compare
QEN71_RS17680 -4.1 -19.2 amidophosphoribosyltransferase compare
QEN71_RS28005 -4.1 -5.6 glutamate synthase subunit beta compare
QEN71_RS04070 -4.1 -13.0 prephenate dehydratase compare
QEN71_RS28040 -4.1 -9.4 shikimate kinase compare
QEN71_RS27840 -4.1 -12.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
QEN71_RS02785 -4.0 -18.2 ornithine carbamoyltransferase compare
QEN71_RS22400 -3.9 -12.9 threonine synthase compare
QEN71_RS17640 -3.9 -11.9 phosphoribosylanthranilate isomerase compare
QEN71_RS27560 -3.9 -13.6 anthranilate phosphoribosyltransferase compare
QEN71_RS01985 -3.9 -17.8 threonine ammonia-lyase, biosynthetic compare
QEN71_RS17615 -3.8 -4.6 3-isopropylmalate dehydratase small subunit compare
QEN71_RS01755 -3.8 -13.3 RNA polymerase factor sigma-54 compare
QEN71_RS24400 -3.8 -8.8 phosphoribosylamine--glycine ligase compare
QEN71_RS26235 -3.8 -5.2 serine hydroxymethyltransferase compare
QEN71_RS26600 -3.8 -9.0 pyrroline-5-carboxylate reductase compare
QEN71_RS04085 -3.7 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
QEN71_RS28080 -3.7 -13.1 diaminopimelate decarboxylase compare
QEN71_RS27855 -3.7 -10.1 imidazoleglycerol-phosphate dehydratase HisB compare
QEN71_RS24225 -3.7 -18.8 acetolactate synthase 3 catalytic subunit compare
QEN71_RS04065 -3.6 -14.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
QEN71_RS22160 -3.6 -19.6 phosphoserine phosphatase SerB compare
QEN71_RS27130 -3.6 -11.5 shikimate dehydrogenase compare
QEN71_RS09235 -3.6 -13.7 argininosuccinate synthase compare
QEN71_RS25255 -3.6 -13.4 nitrite/sulfite reductase compare
QEN71_RS24215 -3.6 -12.2 ketol-acid reductoisomerase compare
QEN71_RS21920 -3.5 -21.9 phosphoribosylformylglycinamidine synthase compare
QEN71_RS24165 -3.5 -12.0 triose-phosphate isomerase compare
QEN71_RS27835 -3.5 -12.8 imidazole glycerol phosphate synthase subunit HisF compare
QEN71_RS27830 -3.4 -5.8 phosphoribosyl-AMP cyclohydrolase compare
QEN71_RS25725 -3.3 -9.8 ABC transporter ATP-binding protein compare
QEN71_RS06505 -3.3 -8.3 phosphoenolpyruvate synthase compare
QEN71_RS01375 -3.3 -8.2 sigma-54 dependent transcriptional regulator compare
QEN71_RS26445 -3.3 -15.3 phosphoribosylformylglycinamidine cyclo-ligase compare
QEN71_RS17605 -3.3 -7.9 3-isopropylmalate dehydratase large subunit compare
QEN71_RS02450 -3.3 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
QEN71_RS17645 -3.3 -8.4 tryptophan synthase subunit beta compare
QEN71_RS27270 -3.2 -10.4 glutamate 5-kinase compare
QEN71_RS22595 -3.2 -10.9 transcriptional repressor LexA compare
QEN71_RS02440 -3.2 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS25715 -3.2 -4.4 acetyltransferase compare
QEN71_RS27555 -3.2 -4.3 aminodeoxychorismate/anthranilate synthase component II compare
QEN71_RS27425 -3.2 -15.3 penicillin-binding protein 2 compare
QEN71_RS25425 -3.2 -4.3 glycosyltransferase compare
QEN71_RS26780 -3.1 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS25720 -3.0 -3.0 SAM-dependent methyltransferase compare
QEN71_RS24450 -3.0 -15.6 O-antigen ligase family protein compare
QEN71_RS24945 -3.0 -5.8 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
QEN71_RS17600 -3.0 -15.7 citrate synthase compare
QEN71_RS25700 -3.0 -2.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS03515 -3.0 -4.9 septum site-determining protein MinC compare
QEN71_RS17620 -3.0 -6.6 3-isopropylmalate dehydrogenase compare
QEN71_RS06190 -3.0 -2.0 C40 family peptidase compare
QEN71_RS25630 -3.0 -3.5 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS25690 -2.9 -2.9 glycosyltransferase family 4 protein compare
QEN71_RS06455 -2.9 -8.8 RIP metalloprotease RseP compare
QEN71_RS25235 -2.9 -10.1 sulfate adenylyltransferase subunit 1 compare
QEN71_RS25710 -2.9 -5.2 GNAT family N-acetyltransferase compare
QEN71_RS14065 -2.7 -2.2 hypothetical protein compare
QEN71_RS25240 -2.7 -9.0 sulfate adenylyltransferase subunit CysD compare
QEN71_RS01365 -2.7 -11.1 dicarboxylate/amino acid:cation symporter compare
QEN71_RS05720 -2.7 -17.5 oxygen sensor histidine kinase FixL compare
QEN71_RS03385 -2.7 -8.3 DNA translocase FtsK compare
QEN71_RS24220 -2.7 -4.7 acetolactate synthase small subunit compare
QEN71_RS21935 -2.7 -5.7 glucose-6-phosphate isomerase compare
QEN71_RS25250 -2.7 -6.6 DUF934 domain-containing protein compare
QEN71_RS25245 -2.7 -5.0 phosphoadenylyl-sulfate reductase compare
QEN71_RS01440 -2.6 -3.6 S41 family peptidase compare
QEN71_RS25260 -2.6 -12.7 CysB family HTH-type transcriptional regulator compare
QEN71_RS03005 -2.6 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS39060 -2.5 -2.4 helix-turn-helix domain-containing protein compare
QEN71_RS25705 -2.5 -2.4 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS06500 -2.5 -2.2 pyruvate, water dikinase regulatory protein compare
QEN71_RS25695 -2.4 -9.3 glycosyltransferase family 4 protein compare
QEN71_RS06310 -2.4 -1.6 lysophospholipid transporter LplT compare
QEN71_RS29480 -2.4 -15.3 cation:proton antiporter compare
QEN71_RS05480 -2.3 -17.3 phosphomethylpyrimidine synthase ThiC compare
QEN71_RS29475 -2.3 -13.9 YbdK family carboxylate-amine ligase compare
QEN71_RS04575 -2.2 -5.9 RNA polymerase sigma factor RpoE compare
QEN71_RS27785 -2.2 -2.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS25625 -2.2 -15.4 glycosyltransferase family 2 protein compare
QEN71_RS26190 -2.2 -4.6 DUF883 family protein compare
QEN71_RS35260 -2.2 -1.5 M15 family metallopeptidase compare
QEN71_RS01420 -2.1 -7.7 PTS sugar transporter subunit IIB compare
QEN71_RS24240 -2.1 -6.2 DUF3106 domain-containing protein compare
QEN71_RS03520 -2.1 -7.3 septum site-determining protein MinD compare
QEN71_RS01430 -2.1 -3.1 phosphoenolpyruvate--protein phosphotransferase compare
QEN71_RS25735 -2.0 -13.1 glycosyltransferase family 2 protein compare
QEN71_RS06355 -2.0 -6.4 succinyl-diaminopimelate desuccinylase compare
QEN71_RS43010 -2.0 -1.4 cold-shock protein compare
QEN71_RS21980 -2.0 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS33705 -2.0 -5.8 cystathionine gamma-synthase family protein compare
QEN71_RS25420 -2.0 -6.0 oligosaccharide flippase family protein compare
QEN71_RS43335 -2.0 -1.8 hypothetical protein compare
QEN71_RS02250 -2.0 -2.9 DeoR/GlpR family DNA-binding transcription regulator compare
QEN71_RS08115 -2.0 -2.2 DUF2164 domain-containing protein compare
QEN71_RS01370 -1.9 -12.1 ATP-binding protein compare
QEN71_RS04080 -1.9 -7.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
QEN71_RS21975 -1.9 -7.7 endopeptidase La compare
QEN71_RS26275 -1.9 -4.4 tol-pal system protein YbgF compare
QEN71_RS26545 -1.9 -14.3 AsmA-like C-terminal region-containing protein compare
QEN71_RS24940 -1.8 -9.0 heme biosynthesis protein HemY compare
QEN71_RS39815 -1.8 -1.6 IS5/IS1182 family transposase compare
QEN71_RS26855 -1.8 -2.1 dihydroorotase compare
QEN71_RS42940 -1.8 -2.5 CopG family transcriptional regulator compare
QEN71_RS38345 -1.8 -1.2 CBS domain-containing protein compare
QEN71_RS26195 -1.8 -3.3 phage holin family protein compare
QEN71_RS08930 -1.8 -1.2 hypothetical protein compare
QEN71_RS21425 -1.7 -6.8 HAMP domain-containing sensor histidine kinase compare
QEN71_RS29895 -1.7 -2.1 hypothetical protein compare
QEN71_RS02370 -1.7 -10.8 Wzy polymerase domain-containing protein compare
QEN71_RS41030 -1.7 -3.7 XRE family transcriptional regulator compare
QEN71_RS20840 -1.7 -3.7 DUF1109 domain-containing protein compare
QEN71_RS25600 -1.7 -9.1 SDR family oxidoreductase compare
QEN71_RS17545 -1.7 -3.6 hypothetical protein compare
QEN71_RS00180 -1.7 -3.2 DUF4390 domain-containing protein compare
QEN71_RS25605 -1.6 -13.4 glycosyltransferase family 2 protein compare
QEN71_RS41540 -1.6 -1.9 aminotransferase class V-fold PLP-dependent enzyme compare
QEN71_RS17670 -1.6 -6.7 SPOR domain-containing protein compare
QEN71_RS16400 -1.6 -8.4 adenosyl-hopene transferase HpnH compare
QEN71_RS40475 -1.6 -2.4 IS256 family transposase compare
QEN71_RS08645 -1.6 -2.1 GTP cyclohydrolase II compare
QEN71_RS16650 -1.6 -1.9 nucleotide pyrophosphohydrolase compare
QEN71_RS00185 -1.5 -6.5 PAS domain-containing sensor histidine kinase compare
QEN71_RS06385 -1.5 -5.0 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
QEN71_RS36640 -1.5 -4.5 haloacid dehalogenase type II compare
QEN71_RS26560 -1.5 -9.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
QEN71_RS25105 -1.5 -6.7 adenosylcobinamide-phosphate synthase CbiB compare
QEN71_RS34305 -1.5 -2.9 GntR family transcriptional regulator compare
QEN71_RS24090 -1.4 -8.9 NADH-quinone oxidoreductase subunit M compare
QEN71_RS30025 -1.4 -3.6 ester cyclase compare
QEN71_RS43715 -1.4 -1.6 hypothetical protein compare
QEN71_RS04235 -1.4 -5.2 CobD/CbiB family protein compare
QEN71_RS03065 -1.4 -5.4 carboxylating nicotinate-nucleotide diphosphorylase compare
QEN71_RS15745 -1.4 -2.5 DUF3331 domain-containing protein compare
QEN71_RS37055 -1.4 -1.2 hypothetical protein compare
QEN71_RS40800 -1.4 -2.9 transposase compare
QEN71_RS17430 -1.3 -1.7 response regulator transcription factor compare
QEN71_RS22330 -1.3 -2.5 glycosyltransferase family 39 protein compare
QEN71_RS32110 -1.3 -1.4 phasin family protein compare
QEN71_RS01745 -1.3 -3.0 PTS sugar transporter subunit IIA compare
QEN71_RS12345 -1.3 -3.6 PadR family transcriptional regulator compare
QEN71_RS37615 -1.3 -1.2 DoxX family protein compare
QEN71_RS37610 -1.3 -1.1 DUF2282 domain-containing protein compare
QEN71_RS02150 -1.3 -3.1 lysophospholipid acyltransferase family protein compare
QEN71_RS15655 -1.3 -4.4 (2Fe-2S)-binding protein compare
QEN71_RS12810 -1.3 -1.5 hypothetical protein compare
QEN71_RS11760 -1.3 -1.4 tautomerase family protein compare
QEN71_RS06050 -1.3 -5.9 colicin transporter compare
QEN71_RS03040 -1.3 -7.2 phosphoribosylglycinamide formyltransferase compare
QEN71_RS31740 -1.3 -4.8 type VI secretion system-associated protein TagF compare
QEN71_RS24050 -1.3 -3.0 MaoC family dehydratase compare
QEN71_RS42150 -1.2 -3.1 hypothetical protein compare
QEN71_RS26775 -1.2 -2.9 Fis family transcriptional regulator compare
QEN71_RS33155 -1.2 -3.6 DUF802 domain-containing protein compare
QEN71_RS34660 -1.2 -1.8 sterol desaturase family protein compare
QEN71_RS25150 -1.2 -3.3 ATPase compare
QEN71_RS24365 -1.2 -1.5 K(+)-transporting ATPase subunit F compare
QEN71_RS27190 -1.2 -4.9 carbohydrate kinase family protein compare
QEN71_RS38840 -1.2 -2.5 SDR family oxidoreductase compare
QEN71_RS41145 -1.2 -1.7 hypothetical protein compare
QEN71_RS29185 -1.2 -7.4 UvrD-helicase domain-containing protein compare
QEN71_RS30880 -1.2 -2.1 hypothetical protein compare
QEN71_RS15020 -1.2 -1.2 glycosyltransferase family 9 protein compare
QEN71_RS05615 -1.2 -1.4 oxidative damage protection protein compare
QEN71_RS15400 -1.2 -1.6 ABC transporter ATP-binding protein compare
QEN71_RS27325 -1.2 -7.3 cell division protein ZapD compare
QEN71_RS27600 -1.2 -3.8 redox-regulated ATPase YchF compare
QEN71_RS26525 -1.2 -6.7 heat-inducible transcriptional repressor HrcA compare
QEN71_RS32240 -1.2 -2.6 anti-sigma factor compare
QEN71_RS42340 -1.2 -1.3 tyrosine-type recombinase/integrase compare
QEN71_RS03070 -1.1 -8.8 L-aspartate oxidase compare
QEN71_RS32935 -1.1 -1.6 type 1 glutamine amidotransferase domain-containing protein compare
QEN71_RS40135 -1.1 -1.0 ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia sabiae LMG 24235 in carbon source experiments

For carbon source D,L-Malic Acid across organisms