Experiment set1S49 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.6 -15.4 Pca regulon regulatory protein compare
MPMX19_03871 -3.0 -3.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06547 -2.7 -6.8 hypothetical protein compare
MPMX19_00530 -2.6 -4.5 Orotate phosphoribosyltransferase compare
MPMX19_05680 -2.5 -5.1 Cell cycle response regulator CtrA compare
MPMX19_02514 -2.4 -2.3 hypothetical protein compare
MPMX19_04644 -2.3 -3.6 hypothetical protein compare
MPMX19_00260 -2.3 -3.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00126 -2.2 -4.0 hypothetical protein compare
MPMX19_02267 -2.2 -1.5 hypothetical protein compare
MPMX19_00858 -2.1 -6.4 Flagellar biosynthetic protein FliP compare
MPMX19_04000 -2.1 -4.8 Flagellar motor switch protein FliG compare
MPMX19_00128 -2.1 -11.9 hypothetical protein compare
MPMX19_02658 -2.0 -12.8 Glutamate synthase [NADPH] small chain compare
MPMX19_02657 -2.0 -15.3 Glutamate synthase [NADPH] large chain compare
MPMX19_04087 -2.0 -4.2 Flagellum site-determining protein YlxH compare
MPMX19_04115 -1.9 -2.9 Sensor histidine kinase RcsC compare
MPMX19_04171 -1.9 -1.8 16S ribosomal RNA compare
MPMX19_00705 -1.9 -3.7 Cell division coordinator CpoB compare
MPMX19_01630 -1.9 -4.6 Phosphoribosylamine--glycine ligase compare
MPMX19_01484 -1.8 -7.0 Flagellar basal-body rod protein FlgG compare
MPMX19_00714 -1.8 -7.5 Ferrous-iron efflux pump FieF compare
MPMX19_00866 -1.7 -7.2 Flagellar biosynthetic protein FliR compare
MPMX19_01483 -1.7 -9.8 Flagellar basal-body rod protein FlgG compare
MPMX19_01053 -1.7 -4.1 Dihydroorotase compare
MPMX19_01495 -1.6 -2.7 hypothetical protein compare
MPMX19_00867 -1.6 -11.2 Flagellar biosynthetic protein FlhB compare
MPMX19_01714 -1.6 -2.1 tRNA-modifying protein YgfZ compare
MPMX19_05023 -1.6 -2.1 hypothetical protein compare
MPMX19_02207 -1.6 -3.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_01014 -1.6 -4.8 Indole-3-glycerol phosphate synthase compare
MPMX19_04112 -1.6 -5.7 hypothetical protein compare
MPMX19_00335 -1.6 -1.9 Magnesium transport protein CorA compare
MPMX19_02980 -1.6 -1.8 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_01084 -1.5 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_04092 -1.5 -6.2 Flagellar motor switch protein FliN compare
MPMX19_06327 -1.5 -1.7 hypothetical protein compare
MPMX19_01497 -1.5 -3.2 hypothetical protein compare
MPMX19_02136 -1.5 -1.9 Phage shock protein A compare
MPMX19_00838 -1.4 -2.2 GTP pyrophosphokinase rsh compare
MPMX19_02981 -1.4 -3.8 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00863 -1.4 -6.4 Flagellar basal-body rod protein FlgC compare
MPMX19_05679 -1.4 -7.1 Flagellum-specific ATP synthase compare
MPMX19_05454 -1.4 -2.6 hypothetical protein compare
MPMX19_01376 -1.4 -2.4 hypothetical protein compare
MPMX19_00862 -1.4 -6.8 hypothetical protein compare
MPMX19_06134 -1.3 -3.7 hypothetical protein compare
MPMX19_04948 -1.3 -2.4 HTH-type transcriptional regulator GltR compare
MPMX19_02116 -1.3 -1.7 Cold shock protein CspA compare
MPMX19_02618 -1.3 -1.8 Transcriptional regulatory protein BaeR compare
MPMX19_01718 -1.3 -2.6 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_04094 -1.3 -7.5 Flagellar M-ring protein compare
MPMX19_02664 -1.3 -1.7 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_05442 -1.3 -2.9 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_03787 -1.3 -2.4 hypothetical protein compare
MPMX19_01054 -1.3 -4.9 Aspartate carbamoyltransferase compare
MPMX19_05930 -1.3 -2.9 Dipeptidyl-peptidase 6 compare
MPMX19_00182 -1.2 -1.8 hypothetical protein compare
MPMX19_03226 -1.2 -3.2 hypothetical protein compare
MPMX19_05217 -1.2 -1.3 Flagellin compare
MPMX19_04208 -1.2 -3.4 flagellum biosynthesis repressor protein FlbT compare
MPMX19_04222 -1.2 -8.7 hypothetical protein compare
MPMX19_01113 -1.2 -2.5 Adaptive-response sensory-kinase SasA compare
MPMX19_01075 -1.2 -1.9 Molybdopterin synthase sulfur carrier subunit compare
MPMX19_01304 -1.2 -7.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_05678 -1.2 -5.9 hypothetical protein compare
MPMX19_00236 -1.2 -3.0 HTH-type transcriptional regulator IscR compare
MPMX19_00131 -1.2 -2.3 hypothetical protein compare
MPMX19_04429 -1.2 -3.8 N-acetylmuramoyl-L-alanine amidase AmiA compare
MPMX19_02397 -1.2 -2.4 hypothetical protein compare
MPMX19_00181 -1.2 -2.9 hypothetical protein compare
MPMX19_00864 -1.2 -2.8 Flagellar hook-basal body complex protein FliE compare
MPMX19_04093 -1.2 -2.1 hypothetical protein compare
MPMX19_00311 -1.2 -9.3 hypothetical protein compare
MPMX19_00139 -1.2 -3.3 hypothetical protein compare
MPMX19_04100 -1.2 -2.6 hypothetical protein compare
MPMX19_06519 -1.1 -1.4 HTH-type transcriptional repressor NagR compare
MPMX19_05070 -1.1 -5.1 hypothetical protein compare
MPMX19_00061 -1.1 -2.4 L-lysine 2,3-aminomutase compare
MPMX19_06914 -1.1 -1.3 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_03798 -1.1 -2.5 hypothetical protein compare
MPMX19_04958 -1.1 -2.6 Methyl-accepting chemotaxis protein compare
MPMX19_01394 -1.1 -1.1 hypothetical protein compare
MPMX19_00854 -1.1 -9.0 hypothetical protein compare
MPMX19_05449 -1.1 -2.5 hypothetical protein compare
MPMX19_00503 -1.1 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_02737 -1.1 -4.5 Tryptophan synthase alpha chain compare
MPMX19_03439 -1.1 -2.0 hypothetical protein compare
MPMX19_01822 -1.1 -4.8 2-isopropylmalate synthase compare
MPMX19_04835 -1.0 -2.6 hypothetical protein compare
MPMX19_04089 -1.0 -6.9 Flagellar biosynthesis protein FlhA compare
MPMX19_01777 -1.0 -2.1 2-aminoadipate transaminase compare
MPMX19_00906 -1.0 -7.0 Amidophosphoribosyltransferase compare
MPMX19_03728 -1.0 -2.1 hypothetical protein compare
MPMX19_06090 -1.0 -1.4 Pyruvate dehydrogenase complex repressor compare
MPMX19_04963 -1.0 -1.8 Cysteine desulfurase IscS compare
MPMX19_03165 -1.0 -2.0 hypothetical protein compare
MPMX19_05254 -1.0 -1.7 Carbon monoxide dehydrogenase small chain compare
MPMX19_02120 -1.0 -2.1 hypothetical protein compare
MPMX19_01297 -1.0 -1.7 hypothetical protein compare
MPMX19_05727 -1.0 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_06734 -1.0 -8.3 Alginate biosynthesis protein AlgA compare
MPMX19_00319 -1.0 -1.3 hypothetical protein compare
MPMX19_03756 -1.0 -2.1 hypothetical protein compare
MPMX19_02268 -1.0 -2.9 hypothetical protein compare
MPMX19_05111 -1.0 -1.8 PqqA binding protein compare
MPMX19_03609 -1.0 -2.4 HTH-type transcriptional repressor NagR compare
MPMX19_02675 -1.0 -7.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_06266 -1.0 -1.3 hypothetical protein compare
MPMX19_04205 -1.0 -1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_01545 -1.0 -1.5 Lon protease compare
MPMX19_05982 -0.9 -2.6 hypothetical protein compare
MPMX19_05252 -0.9 -2.3 Carbon monoxide dehydrogenase medium chain compare
MPMX19_00976 -0.9 -1.7 ATP-dependent RNA helicase RhlE compare
MPMX19_04114 -0.9 -2.1 hypothetical protein compare
MPMX19_02516 -0.9 -3.4 hypothetical protein compare
MPMX19_02779 -0.9 -1.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02235 -0.9 -2.9 tRNA-Ala compare
MPMX19_03496 -0.9 -2.1 Protein FdhE compare
MPMX19_01247 -0.9 -2.1 Transcriptional regulatory protein DegU compare
MPMX19_01884 -0.9 -2.0 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_01395 -0.9 -1.7 hypothetical protein compare
MPMX19_03472 -0.9 -2.1 Fatty acid metabolism regulator protein compare
MPMX19_06490 -0.9 -1.4 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02809 -0.9 -1.6 D-erythronate kinase compare
MPMX19_04200 -0.9 -4.0 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06644 -0.9 -7.1 GDP-mannose 4,6-dehydratase compare
MPMX19_01727 -0.9 -2.4 hypothetical protein compare
MPMX19_03063 -0.9 -2.1 hypothetical protein compare
MPMX19_03846 -0.9 -1.5 hypothetical protein compare
MPMX19_01883 -0.8 -3.6 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_06508 -0.8 -2.5 Nitrilotriacetate monooxygenase component A compare
MPMX19_06321 -0.8 -2.6 hypothetical protein compare
MPMX19_01496 -0.8 -4.5 hypothetical protein compare
MPMX19_04522 -0.8 -2.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00167 -0.8 -1.2 hypothetical protein compare
MPMX19_01365 -0.8 -1.0 hypothetical protein compare
MPMX19_06322 -0.8 -1.8 hypothetical protein compare
MPMX19_03948 -0.8 -1.3 tRNA-Ser compare
MPMX19_04809 -0.8 -3.3 hypothetical protein compare
MPMX19_00904 -0.8 -4.5 DNA repair protein RadA compare
MPMX19_05915 -0.8 -1.5 Flagellar M-ring protein compare
MPMX19_01059 -0.8 -0.8 hypothetical protein compare
MPMX19_03851 -0.8 -2.9 hypothetical protein compare
MPMX19_01577 -0.8 -2.6 hypothetical protein compare
MPMX19_05719 -0.8 -1.6 hypothetical protein compare
MPMX19_02084 -0.8 -1.2 hypothetical protein compare
MPMX19_00148 -0.8 -1.2 hypothetical protein compare
MPMX19_04869 -0.8 -2.7 DNA polymerase I compare
MPMX19_04391 -0.8 -3.9 Homoserine O-acetyltransferase compare
MPMX19_02041 -0.8 -1.7 Protein YciI compare
MPMX19_01321 -0.8 -2.1 tRNA-Cys compare
MPMX19_05458 -0.8 -2.5 hypothetical protein compare
MPMX19_05313 -0.8 -1.5 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_00020 -0.8 -0.8 hypothetical protein compare
MPMX19_05658 -0.8 -1.7 hypothetical protein compare
MPMX19_03676 -0.8 -2.4 hypothetical protein compare
MPMX19_00839 -0.8 -1.5 hypothetical protein compare
MPMX19_02736 -0.8 -4.9 Tryptophan synthase beta chain compare
MPMX19_05387 -0.8 -1.3 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_03048 -0.7 -1.9 hypothetical protein compare
MPMX19_03114 -0.7 -2.4 hypothetical protein compare
MPMX19_01669 -0.7 -3.0 Transcriptional regulator MraZ compare
MPMX19_06926 -0.7 -2.7 hypothetical protein compare
MPMX19_06271 -0.7 -5.0 hypothetical protein compare
MPMX19_01613 -0.7 -2.1 hypothetical protein compare
MPMX19_00184 -0.7 -2.8 hypothetical protein compare
MPMX19_02310 -0.7 -1.9 hypothetical protein compare
MPMX19_01494 -0.7 -4.3 Flagellar P-ring protein compare
MPMX19_06577 -0.7 -4.7 hypothetical protein compare
MPMX19_01918 -0.7 -1.1 tRNA-Ala compare
MPMX19_02450 -0.7 -3.5 hypothetical protein compare
MPMX19_05119 -0.7 -5.0 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_06762 -0.7 -1.6 Peptide deformylase compare
MPMX19_06921 -0.7 -2.7 hypothetical protein compare
MPMX19_06928 -0.7 -1.4 hypothetical protein compare
MPMX19_06383 -0.7 -1.8 hypothetical protein compare
MPMX19_05936 -0.7 -2.1 Alpha-galactosidase compare
MPMX19_01125 -0.7 -0.7 hypothetical protein compare
MPMX19_01481 -0.7 -4.4 Flagellar motor switch protein FliM compare
MPMX19_06102 -0.7 -2.1 Membrane-bound lytic murein transglycosylase C compare
MPMX19_02248 -0.7 -2.3 hypothetical protein compare
MPMX19_06952 -0.7 -2.0 Electron transfer flavoprotein subunit alpha compare
MPMX19_00890 -0.7 -1.2 hypothetical protein compare
MPMX19_01244 -0.7 -1.4 hypothetical protein compare
MPMX19_05189 -0.7 -1.7 hypothetical protein compare
MPMX19_06969 -0.7 -2.0 hypothetical protein compare
MPMX19_06581 -0.7 -4.3 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_05358 -0.7 -0.9 hypothetical protein compare
MPMX19_01454 -0.7 -1.1 hypothetical protein compare
MPMX19_06885 -0.7 -1.7 Nitrate import ATP-binding protein NrtD compare
MPMX19_02254 -0.7 -2.4 hypothetical protein compare
MPMX19_02404 -0.7 -2.0 LexA repressor compare
MPMX19_05192 -0.7 -3.1 hypothetical protein compare
MPMX19_00163 -0.7 -2.5 hypothetical protein compare
MPMX19_01939 -0.7 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_03295 -0.7 -1.7 HTH-type transcriptional regulator McbR compare
MPMX19_02511 -0.7 -1.3 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_04390 -0.7 -1.3 hypothetical protein compare
MPMX19_05825 -0.7 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms