Experiment set1S49 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_03123 +1.4 3.0 Citrate lyase acyl carrier protein compare
MPMX19_06197 +1.1 2.7 hypothetical protein compare
MPMX19_05581 +1.1 2.5 hypothetical protein compare
MPMX19_00166 +1.0 2.0 hypothetical protein compare
MPMX19_04449 +0.9 2.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_03169 +0.9 3.0 Dihydroanticapsin 7-dehydrogenase compare
MPMX19_05652 +0.9 2.6 hypothetical protein compare
MPMX19_04687 +0.9 2.4 Atrazine chlorohydrolase compare
MPMX19_06297 +0.9 1.5 hypothetical protein compare
MPMX19_02551 +0.9 2.7 hypothetical protein compare
MPMX19_02218 +0.9 1.6 hypothetical protein compare
MPMX19_06207 +0.9 2.3 hypothetical protein compare
MPMX19_00046 +0.8 2.2 hypothetical protein compare
MPMX19_06510 +0.8 2.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05606 +0.8 2.7 hypothetical protein compare
MPMX19_04682 +0.8 2.0 hypothetical protein compare
MPMX19_00129 +0.7 1.4 hypothetical protein compare
MPMX19_00211 +0.7 3.1 putative copper-importing P-type ATPase A compare
MPMX19_03297 +0.7 1.7 hypothetical protein compare
MPMX19_04408 +0.7 1.3 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
MPMX19_00258 +0.7 1.4 Protein ImuB compare
MPMX19_05043 +0.7 3.5 hypothetical protein compare
MPMX19_02092 +0.7 2.7 hypothetical protein compare
MPMX19_05014 +0.7 2.2 Cytochrome c1 compare
MPMX19_06610 +0.7 1.5 hypothetical protein compare
MPMX19_04579 +0.7 2.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_04262 +0.7 3.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02091 +0.7 2.9 hypothetical protein compare
MPMX19_03862 +0.7 2.6 hypothetical protein compare
MPMX19_04560 +0.6 1.9 hypothetical protein compare
MPMX19_05762 +0.6 1.8 hypothetical protein compare
MPMX19_01283 +0.6 2.4 hypothetical protein compare
MPMX19_02865 +0.6 1.9 hypothetical protein compare
MPMX19_00362 +0.6 1.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06569 +0.6 2.4 hypothetical protein compare
MPMX19_04393 +0.6 1.5 hypothetical protein compare
MPMX19_01864 +0.6 1.7 Regulatory protein AtoC compare
MPMX19_00212 +0.6 5.0 Nitrogen fixation regulation protein FixK compare
MPMX19_02499 +0.6 2.3 hypothetical protein compare
MPMX19_03631 +0.6 1.4 hypothetical protein compare
MPMX19_04898 +0.6 2.4 Transcriptional regulatory protein LnrK compare
MPMX19_05656 +0.6 1.7 HTH-type transcriptional activator RhaR compare
MPMX19_03038 +0.6 1.8 hypothetical protein compare
MPMX19_04916 +0.6 2.1 DNA-binding transcriptional activator DecR compare
MPMX19_06381 +0.6 0.9 putative manganese efflux pump MntP compare
MPMX19_05176 +0.6 1.0 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_02796 +0.6 2.0 Methanogen homoaconitase small subunit compare
MPMX19_06456 +0.6 1.0 hypothetical protein compare
MPMX19_00686 +0.6 2.4 hypothetical protein compare
MPMX19_02559 +0.6 1.3 7-methyl-GTP pyrophosphatase compare
MPMX19_02295 +0.6 2.7 Periplasmic nitrate reductase, electron transfer subunit compare
MPMX19_06509 +0.6 1.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04638 +0.6 1.4 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_06373 +0.6 1.7 Lipoprotein signal peptidase compare
MPMX19_05607 +0.6 2.3 Sensor histidine kinase RcsC compare
MPMX19_01073 +0.6 2.0 5'-nucleotidase compare
MPMX19_03715 +0.6 1.8 Response regulator ArlR compare
MPMX19_05773 +0.5 2.2 Putative 1,2-phenylacetyl-CoA epoxidase, subunit D compare
MPMX19_03509 +0.5 1.5 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic compare
MPMX19_03039 +0.5 1.4 Cyclic AMP receptor protein compare
MPMX19_06353 +0.5 1.3 hypothetical protein compare
MPMX19_03916 +0.5 1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_05850 +0.5 1.5 hypothetical protein compare
MPMX19_00825 +0.5 2.4 hypothetical protein compare
MPMX19_01479 +0.5 2.5 hypothetical protein compare
MPMX19_00010 +0.5 2.3 Transcriptional regulatory protein OmpR compare
MPMX19_03825 +0.5 0.5 IS5 family transposase IS4811 compare
MPMX19_04053 +0.5 1.7 Transcriptional regulatory protein OmpR compare
MPMX19_06395 +0.5 1.8 Inner membrane protein YqaA compare
MPMX19_03014 +0.5 2.6 Transcriptional activatory protein AadR compare
MPMX19_03900 +0.5 2.4 Hca operon transcriptional activator HcaR compare
MPMX19_04739 +0.5 2.4 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
MPMX19_00414 +0.5 1.3 Pyruvate dehydrogenase complex repressor compare
MPMX19_02756 +0.5 2.7 Glutathione transport system permease protein GsiC compare
MPMX19_01270 +0.5 2.2 L-threonine ammonia-lyase compare
MPMX19_02733 +0.5 2.9 Regulatory protein LuxO compare
MPMX19_06230 +0.5 1.1 hypothetical protein compare
MPMX19_03157 +0.5 1.0 hypothetical protein compare
MPMX19_04838 +0.5 2.2 Heme oxygenase (staphylobilin-producing) compare
MPMX19_06269 +0.5 2.3 IS110 family transposase ISHne4 compare
MPMX19_00074 +0.5 1.6 Electron transfer flavoprotein subunit beta compare
MPMX19_01643 +0.5 2.4 hypothetical protein compare
MPMX19_02502 +0.5 2.3 hypothetical protein compare
MPMX19_00791 +0.5 3.3 hypothetical protein compare
MPMX19_03943 +0.5 2.9 hypothetical protein compare
MPMX19_05622 +0.5 3.6 Sensor histidine kinase RegB compare
MPMX19_06520 +0.5 1.2 Nitrate import ATP-binding protein NrtC compare
MPMX19_03425 +0.5 0.7 hypothetical protein compare
MPMX19_03768 +0.5 1.0 hypothetical protein compare
MPMX19_03262 +0.5 1.4 putative HTH-type transcriptional repressor ExuR compare
MPMX19_03007 +0.5 1.6 Arabinose import ATP-binding protein AraG compare
MPMX19_01703 +0.5 1.4 hypothetical protein compare
MPMX19_01330 +0.5 1.7 3-mercaptopyruvate sulfurtransferase compare
MPMX19_06478 +0.5 1.7 hypothetical protein compare
MPMX19_03329 +0.5 1.3 hypothetical protein compare
MPMX19_00492 +0.5 2.0 Cobalamin biosynthesis protein CbiB compare
MPMX19_06892 +0.5 1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04088 +0.5 1.9 Signal recognition particle 54 kDa protein compare
MPMX19_04633 +0.5 1.7 hypothetical protein compare
MPMX19_01866 +0.5 1.7 Sulfur carrier protein CysO compare
MPMX19_06041 +0.5 2.5 hypothetical protein compare
MPMX19_06947 +0.5 1.7 hypothetical protein compare
MPMX19_00945 +0.5 2.2 hypothetical protein compare
MPMX19_05575 +0.5 1.4 hypothetical protein compare
MPMX19_00095 +0.5 2.1 ATP-dependent RNA helicase HrpB compare
MPMX19_02819 +0.5 2.0 hypothetical protein compare
MPMX19_04690 +0.4 3.1 hypothetical protein compare
MPMX19_04058 +0.4 1.4 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_06950 +0.4 2.0 Glycine cleavage system transcriptional activator compare
MPMX19_04680 +0.4 1.2 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_00608 +0.4 0.7 hypothetical protein compare
MPMX19_05734 +0.4 1.8 Tol-Pal system protein TolQ compare
MPMX19_00206 +0.4 3.3 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_05779 +0.4 0.8 Beta-ketoadipyl-CoA thiolase compare
MPMX19_01426 +0.4 0.8 hypothetical protein compare
MPMX19_05175 +0.4 2.0 hypothetical protein compare
MPMX19_06096 +0.4 2.5 hypothetical protein compare
MPMX19_02251 +0.4 1.2 hypothetical protein compare
MPMX19_04497 +0.4 2.6 hypothetical protein compare
MPMX19_01609 +0.4 1.4 hypothetical protein compare
MPMX19_03972 +0.4 1.9 Enolase compare
MPMX19_03868 +0.4 1.7 Xylitol-binding protein compare
MPMX19_03320 +0.4 1.4 hypothetical protein compare
MPMX19_02794 +0.4 2.8 hypothetical protein compare
MPMX19_01067 +0.4 1.2 hypothetical protein compare
MPMX19_02402 +0.4 1.0 hypothetical protein compare
MPMX19_02706 +0.4 1.9 hypothetical protein compare
MPMX19_03234 +0.4 2.3 hypothetical protein compare
MPMX19_06954 +0.4 1.6 hypothetical protein compare
MPMX19_05861 +0.4 2.6 hypothetical protein compare
MPMX19_06853 +0.4 1.3 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_01391 +0.4 2.0 hypothetical protein compare
MPMX19_02611 +0.4 1.3 hypothetical protein compare
MPMX19_06989 +0.4 1.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05234 +0.4 2.0 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_02851 +0.4 1.3 hypothetical protein compare
MPMX19_06903 +0.4 2.3 Acetolactate synthase isozyme 2 large subunit compare
MPMX19_03481 +0.4 2.5 hypothetical protein compare
MPMX19_04521 +0.4 1.6 Bifunctional protein PaaZ compare
MPMX19_02366 +0.4 2.1 hypothetical protein compare
MPMX19_02674 +0.4 1.0 NADH:quinone reductase compare
MPMX19_03366 +0.4 1.4 hypothetical protein compare
MPMX19_05896 +0.4 1.3 hypothetical protein compare
MPMX19_02835 +0.4 1.7 Phosphoribosyl-dephospho-CoA transferase compare
MPMX19_03869 +0.4 2.0 hypothetical protein compare
MPMX19_02524 +0.4 3.0 tRNA pseudouridine synthase B compare
MPMX19_05177 +0.4 1.5 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_02078 +0.4 1.2 hypothetical protein compare
MPMX19_00680 +0.4 1.0 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_06465 +0.4 1.7 hypothetical protein compare
MPMX19_03864 +0.4 1.7 Glycine cleavage system transcriptional activator compare
MPMX19_05834 +0.4 1.0 Hydrogen peroxide-inducible genes activator compare
MPMX19_06765 +0.4 1.2 Hydrogen peroxide-inducible genes activator compare
MPMX19_06214 +0.4 2.3 Aldose 1-epimerase compare
MPMX19_03829 +0.4 2.8 hypothetical protein compare
MPMX19_02527 +0.4 1.8 hypothetical protein compare
MPMX19_05604 +0.4 2.1 hypothetical protein compare
MPMX19_00292 +0.4 2.5 Cytochrome b561 compare
MPMX19_03937 +0.4 1.6 Acyl-CoA dehydrogenase compare
MPMX19_01701 +0.4 2.6 hypothetical protein compare
MPMX19_03629 +0.4 2.2 hypothetical protein compare
MPMX19_00244 +0.4 1.4 hypothetical protein compare
MPMX19_06981 +0.4 1.8 hypothetical protein compare
MPMX19_05623 +0.4 1.9 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_04099 +0.4 1.4 Chemotaxis protein CheY compare
MPMX19_05483 +0.4 1.5 hypothetical protein compare
MPMX19_05224 +0.4 1.1 hypothetical protein compare
MPMX19_06227 +0.4 1.9 L-arabinose 1-dehydrogenase (NAD(P)(+)) compare
MPMX19_05364 +0.4 1.9 Acetate CoA-transferase subunit beta compare
MPMX19_00417 +0.4 1.8 hypothetical protein compare
MPMX19_00792 +0.4 2.3 hypothetical protein compare
MPMX19_03306 +0.4 1.4 hypothetical protein compare
MPMX19_03149 +0.4 2.0 hypothetical protein compare
MPMX19_03094 +0.4 2.7 Metal ABC transporter substrate-binding lipoprotein compare
MPMX19_04513 +0.4 1.8 Adaptive-response sensory-kinase SasA compare
MPMX19_00880 +0.4 2.2 hypothetical protein compare
MPMX19_06199 +0.4 1.4 GTPase HflX compare
MPMX19_05193 +0.4 1.0 Taurine-binding periplasmic protein compare
MPMX19_05862 +0.4 1.4 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_03541 +0.4 2.0 Glutathione transport system permease protein GsiC compare
MPMX19_03716 +0.4 1.7 hypothetical protein compare
MPMX19_03305 +0.4 1.4 L-fucose mutarotase compare
MPMX19_02633 +0.4 2.0 Chaperone protein DnaJ compare
MPMX19_05776 +0.4 2.1 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_03101 +0.4 1.5 hypothetical protein compare
MPMX19_01604 +0.4 1.7 hypothetical protein compare
MPMX19_00031 +0.4 1.2 hypothetical protein compare
MPMX19_05096 +0.4 1.3 L-cystine import ATP-binding protein TcyC compare
MPMX19_04727 +0.4 1.7 hypothetical protein compare
MPMX19_06815 +0.4 1.4 hypothetical protein compare
MPMX19_04447 +0.4 1.3 hypothetical protein compare
MPMX19_00719 +0.4 1.8 Protein ElaA compare
MPMX19_05851 +0.4 2.1 Putative amino-acid ABC transporter-binding protein YhdW compare
MPMX19_05685 +0.4 2.4 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_04409 +0.4 1.2 hypothetical protein compare
MPMX19_05469 +0.4 1.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00423 +0.4 1.6 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_05632 +0.4 2.3 hypothetical protein compare
MPMX19_04081 +0.4 1.1 hypothetical protein compare
MPMX19_04079 +0.4 0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms