Experiment set1S489 for Alteromonas macleodii MIT1002

Compare to:

monoculture; Experiment B, time point 2

200 most important genes:

  gene name fitness t score description  
MIT1002_03690 -7.2 -5.0 DnaK suppressor protein compare
MIT1002_00471 -7.1 -4.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_02524 -7.1 -4.9 Amidophosphoribosyltransferase compare
MIT1002_01027 -7.1 -4.9 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00948 -7.0 -4.9 3-isopropylmalate dehydrogenase compare
MIT1002_00504 -7.0 -4.9 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_02636 -7.0 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02348 -6.9 -8.3 hypothetical protein compare
MIT1002_00949 -6.9 -4.8 2-isopropylmalate synthase compare
MIT1002_04045 -6.9 -4.8 Ketol-acid reductoisomerase compare
MIT1002_00946 -6.8 -4.7 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_02008 -6.8 -6.6 Para-aminobenzoate synthase component 1 compare
MIT1002_02219 -6.8 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_02220 -6.8 -4.7 Phosphoribosylglycinamide formyltransferase compare
MIT1002_01112 -6.7 -4.6 Homoserine O-succinyltransferase compare
MIT1002_03179 -6.7 -4.6 Cystathionine beta-lyase PatB compare
MIT1002_03139 -6.7 -9.1 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00469 -6.6 -6.4 Ornithine carbamoyltransferase compare
MIT1002_02349 -6.6 -4.6 2-hydroxypropyl-CoM lyase compare
MIT1002_00522 -6.6 -4.5 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_00377 -6.6 -4.5 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_01119 -6.5 -4.5 HTH-type transcriptional regulator GltC compare
MIT1002_04040 -6.5 -4.5 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_03015 -6.5 -4.5 aspartoacylase compare
MIT1002_03086 -6.5 -4.5 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_01266 -6.5 -4.5 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_02639 -6.5 -4.5 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_00947 -6.4 -4.4 3-isopropylmalate dehydratase large subunit compare
MIT1002_02266 -6.4 -4.4 Methionine gamma-lyase compare
MIT1002_00467 -6.4 -4.4 Argininosuccinate lyase compare
MIT1002_02634 -6.3 -4.4 Histidinol-phosphate aminotransferase compare
MIT1002_02993 -6.3 -4.4 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02702 -6.3 -4.4 Serine hydroxymethyltransferase compare
MIT1002_02633 -6.3 -4.4 Histidinol dehydrogenase compare
MIT1002_03961 -6.3 -7.5 Phosphoribosylamine--glycine ligase compare
MIT1002_00468 -6.3 -4.3 Argininosuccinate synthase compare
MIT1002_02635 -6.3 -4.3 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_00466 -6.2 -4.3 Amino-acid acetyltransferase compare
MIT1002_03140 -6.2 -4.3 Glutamate synthase [NADPH] small chain compare
MIT1002_01379 -6.2 -4.3 Biotin synthase compare
MIT1002_02638 -6.2 -6.0 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_04044 -6.1 -6.0 HTH-type transcriptional regulator GltC compare
MIT1002_02708 -6.1 -4.2 Phosphoserine phosphatase compare
MIT1002_01466 -6.1 -4.2 Carbamoyl-phosphate synthase small chain compare
MIT1002_03539 -6.1 -3.1 Bifunctional protein BirA compare
MIT1002_04041 -6.1 -4.2 Dihydroxy-acid dehydratase compare
MIT1002_01467 -6.0 -4.2 Carbamoyl-phosphate synthase large chain compare
MIT1002_03084 -6.0 -4.1 Threonine synthase compare
MIT1002_01885 -6.0 -4.1 Gamma-glutamyl phosphate reductase compare
MIT1002_00503 -5.9 -4.1 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_01382 -5.9 -13.7 ATP-dependent dethiobiotin synthetase BioD 1 compare
MIT1002_02637 -5.9 -4.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03062 -5.8 -4.0 Pyrroline-5-carboxylate reductase compare
MIT1002_01429 -5.8 -4.0 Anthranilate synthase component II compare
MIT1002_00160 -5.8 -4.0 Diaminopimelate decarboxylase compare
MIT1002_01428 -5.8 -4.0 Anthranilate synthase component II compare
MIT1002_00161 -5.8 -4.0 putative small periplasmic lipoprotein compare
MIT1002_01736 -5.6 -8.6 Aminodeoxychorismate lyase compare
MIT1002_00437 -5.6 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_00439 -5.6 -7.7 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_03085 -5.6 -3.9 Homoserine kinase compare
MIT1002_01378 -5.6 -5.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
MIT1002_02306 -5.5 -5.4 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_01263 -5.4 -5.5 7-cyano-7-deazaguanine synthase compare
MIT1002_02041 -5.4 -2.8 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase compare
MIT1002_01380 -5.3 -10.3 8-amino-7-oxononanoate synthase compare
MIT1002_01430 -5.3 -3.7 Anthranilate synthase component 1 compare
MIT1002_03331 -5.2 -7.2 D-lactate dehydrogenase compare
MIT1002_00068 -5.2 -7.1 Chorismate--pyruvate lyase compare
MIT1002_01129 -5.1 -3.4 Carbon storage regulator compare
MIT1002_02632 -5.1 -3.5 ATP phosphoribosyltransferase compare
MIT1002_03186 -5.1 -4.9 Nitrogen regulation protein NR(I) compare
MIT1002_01316 -5.1 -6.0 P-protein compare
MIT1002_00759 -5.0 -8.3 protein TolQ compare
MIT1002_01981 -4.8 -9.8 Inner membrane protein YejM compare
MIT1002_03185 -4.8 -10.3 Nitrogen regulation protein NR(II) compare
MIT1002_03616 -4.8 -3.3 NAD(P)H-flavin reductase compare
MIT1002_00423 -4.7 -3.3 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_01427 -4.7 -3.2 Tryptophan biosynthesis protein TrpCF compare
MIT1002_00521 -4.7 -3.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_00092 -4.6 -9.3 2-iminoacetate synthase compare
MIT1002_04092 -4.6 -3.2 putative type I restriction enzymeP M protein compare
MIT1002_00470 -4.6 -7.3 Acetylglutamate kinase compare
MIT1002_02184 -4.6 -2.7 Orotidine 5'-phosphate decarboxylase compare
MIT1002_00827 -4.6 -3.1 RNA polymerase sigma-54 factor 2 compare
MIT1002_02035 -4.5 -2.3 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_02759 -4.5 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_01001 -4.5 -8.6 PII uridylyl-transferase compare
MIT1002_01984 -4.5 -9.1 queuosine biosynthesis protein QueD compare
MIT1002_01084 -4.4 -3.8 Flagellar hook-basal body complex protein FliE compare
MIT1002_01264 -4.4 -7.0 7-carboxy-7-deazaguanine synthase compare
MIT1002_02130 -4.3 -2.6 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_00988 -4.3 -8.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_01345 -4.2 -2.5 tRNA-Ser compare
MIT1002_00673 -4.1 -8.1 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MIT1002_00094 -4.1 -1.2 sulfur carrier protein ThiS compare
MIT1002_00076 -4.1 -3.3 transcriptional regulator, y4mF family compare
MIT1002_00761 -4.1 -7.0 transport protein TonB compare
MIT1002_00758 -4.1 -15.1 Biopolymer transport protein ExbB compare
MIT1002_02133 -4.1 -2.8 putative integral membrane protein linked to a cation pump compare
MIT1002_01217 -4.1 -5.5 2-dehydropantoate 2-reductase compare
MIT1002_00235 -4.1 -2.8 Glycogen synthase compare
MIT1002_00095 -4.0 -11.9 Molybdopterin-synthase adenylyltransferase compare
MIT1002_00093 -4.0 -14.3 Thiazole synthase compare
MIT1002_00097 -4.0 -18.5 Phosphomethylpyrimidine synthase compare
MIT1002_00096 -4.0 -16.4 Thiamine-phosphate synthase compare
MIT1002_02538 -3.9 -2.3 3-oxoacyl-[acyl-carrier-protein] synthase 1 compare
MIT1002_02581 -3.9 -2.7 Disulfide oxidoreductase compare
MIT1002_01676 -3.9 -1.2 Exodeoxyribonuclease I compare
MIT1002_01235 -3.9 -3.6 Monothiol glutaredoxin compare
MIT1002_04036 -3.9 -3.4 LexA repressor compare
MIT1002_01381 -3.9 -9.2 Malonyl-CoA O-methyltransferase BioC compare
MIT1002_01925 -3.8 -2.0 hypothetical protein compare
MIT1002_03978 -3.7 -2.6 General secretion pathway protein F compare
MIT1002_00781 -3.7 -2.4 Ribosomal RNA small subunit methyltransferase A compare
MIT1002_03484 -3.7 -2.1 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_03979 -3.6 -1.9 Pullulanase secretion protein PulG compare
MIT1002_01457 -3.6 -1.5 Heat shock protein 70 compare
MIT1002_03977 -3.6 -2.5 Type II traffic warden ATPase compare
MIT1002_03055 -3.6 -2.5 Glutathione synthetase compare
MIT1002_00955 -3.6 -4.2 Recombinase A compare
MIT1002_00233 -3.6 -2.4 Dye resistance protein compare
MIT1002_00757 -3.5 -11.3 hypothetical protein compare
MIT1002_01816 -3.5 -19.1 Phosphoenolpyruvate synthase compare
MIT1002_00742 -3.5 -5.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
MIT1002_00115 -3.5 -2.1 Iron(III)-binding periplasmic protein compare
MIT1002_03481 -3.5 -3.0 hypothetical protein compare
MIT1002_01352 -3.5 -10.3 Aspartate-semialdehyde dehydrogenase compare
MIT1002_02406 -3.4 -2.4 6-phosphogluconolactonase compare
MIT1002_00762 -3.4 -16.0 Anaphase-promoting complex, cyclosome, subunit 3 compare
MIT1002_03485 -3.4 -2.4 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_03982 -3.4 -2.4 PilD-dependent protein PddD compare
MIT1002_01163 -3.4 -2.3 hypothetical protein compare
MIT1002_03980 -3.4 -2.3 General secretion pathway protein H compare
MIT1002_02136 -3.4 -4.6 hypothetical protein compare
MIT1002_03330 -3.4 -8.0 L-lactate dehydrogenase [cytochrome] compare
MIT1002_02972 -3.4 -5.7 Glycine cleavage system H protein compare
MIT1002_00681 -3.4 -4.0 L-lysine 2,3-aminomutase compare
MIT1002_00114 -3.3 -2.2 hypothetical protein compare
MIT1002_02404 -3.3 -8.3 Glucokinase compare
MIT1002_00109 -3.3 -9.2 Putative reactive intermediate deaminase TdcF compare
MIT1002_03981 -3.2 -1.9 Putative general secretion pathway protein I compare
MIT1002_00117 -3.2 -2.2 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03002 -3.2 -3.8 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_04093 -3.2 -1.3 Type I restriction modification DNA specificity domain protein compare
MIT1002_03976 -3.2 -2.2 Pullulanase secretion envelope PulD compare
MIT1002_00843 -3.1 -5.8 hypothetical protein compare
MIT1002_03983 -3.0 -2.1 Putative general secretion pathway protein K compare
MIT1002_00756 -3.0 -16.0 TonB-dependent receptor compare
MIT1002_03491 -3.0 -15.6 Phosphoenolpyruvate carboxylase compare
MIT1002_02807 -2.9 -4.0 Inositol-1-monophosphatase compare
MIT1002_02125 -2.9 -8.6 Inner membrane protein YbaL compare
MIT1002_01435 -2.9 -1.9 Ribosomal large subunit pseudouridine synthase B compare
MIT1002_01222 -2.9 -2.0 Glutamate--cysteine ligase compare
MIT1002_02132 -2.9 -2.6 Cytochrome c oxidase subunit III compare
MIT1002_03137 -2.9 -6.3 Aerobic respiration control sensor protein ArcB compare
MIT1002_00224 -2.9 -5.4 Ribonuclease G compare
MIT1002_02679 -2.9 -3.9 Ribosomal large subunit pseudouridine synthase D compare
MIT1002_02129 -2.8 -5.1 hypothetical protein compare
MIT1002_02134 -2.8 -6.0 putative copper-importing P-type ATPase A compare
MIT1002_02991 -2.8 -6.5 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_00404 -2.8 -7.6 Formyltetrahydrofolate deformylase compare
MIT1002_00012 -2.8 -3.1 Cytochrome c4 precursor compare
MIT1002_00760 -2.8 -2.6 Biopolymer transport protein ExbD compare
MIT1002_00751 -2.7 -2.3 Phosphate regulon transcriptional regulatory protein PhoB compare
MIT1002_02525 -2.7 -3.4 Pur regulon 18 kDa protein compare
MIT1002_00113 -2.6 -5.9 Putative peroxiredoxin compare
MIT1002_00719 -2.6 -7.8 cytochrome c oxidase accessory protein CcoG compare
MIT1002_03984 -2.6 -1.8 General secretion pathway protein L compare
MIT1002_01508 -2.6 -6.3 hypothetical protein compare
MIT1002_00814 -2.6 -3.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_03791 -2.5 -7.2 N-acetylmuramoyl-L-alanine amidase AmiB precursor compare
MIT1002_01923 -2.5 -7.7 Cell division protein ZipA compare
MIT1002_02405 -2.5 -5.0 Phosphogluconate dehydratase compare
MIT1002_02386 -2.5 -1.0 Small integral membrane protein compare
MIT1002_01515 -2.5 -4.5 Release factor glutamine methyltransferase compare
MIT1002_00116 -2.5 -1.7 Spermidine/putrescine transport system permease protein PotB compare
MIT1002_00683 -2.4 -4.6 Elongation factor P--(R)-beta-lysine ligase compare
MIT1002_03904 -2.4 -8.8 Beta-lactamase precursor compare
MIT1002_04124 -2.4 -1.6 Glucose-inhibited division protein A compare
MIT1002_03788 -2.3 -3.6 Host factor-I protein compare
MIT1002_00815 -2.3 -3.3 Cytochrome b/c1 compare
MIT1002_04134 -2.3 -11.7 Sporulation initiation inhibitor protein soj compare
MIT1002_01853 -2.3 -1.2 Ribosomal silencing factor RsfS compare
MIT1002_01292 -2.2 -3.4 Phosphohistidine phosphatase SixA compare
MIT1002_03909 -2.2 -7.0 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_03488 -2.2 -3.6 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_00073 -2.2 -2.3 Cytochrome c5 compare
MIT1002_02573 -2.2 -7.6 hypothetical protein compare
MIT1002_00752 -2.1 -2.4 Phosphate regulon sensor protein PhoR compare
MIT1002_00670 -2.1 -1.5 Outer membrane protein TolC precursor compare
MIT1002_01544 -2.1 -6.3 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_02218 -2.1 -3.4 hypothetical protein compare
MIT1002_02128 -2.1 -2.5 hypothetical protein compare
MIT1002_00070 -2.1 -1.1 Membrane fusogenic activity compare
MIT1002_03907 -2.1 -8.3 NAD(P) transhydrogenase subunit beta compare
MIT1002_00755 -2.1 -8.2 hypothetical protein compare
MIT1002_03985 -2.0 -3.3 General secretion pathway protein M compare
MIT1002_04026 -2.0 -5.3 BsSco compare
MIT1002_03003 -1.9 -4.7 Pyruvate dehydrogenase E1 component compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in pro99_seawater experiments