Experiment set1S487 for Paraburkholderia sabiae LMG 24235

D-Sorbitol carbon source

Group: carbon source
Media: AB_minimal medium + D-Sorbitol (20 mM)
Culturing: Psabiae_ML3b, tube, Aerobic, at 28 (C), shaken=180 rpm
By: Marta Torres on 12/5/24

Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Sorbitol in Paraburkholderia sabiae LMG 24235

For carbon source D-Sorbitol across organisms

SEED Subsystems

Subsystem	#Specific
Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization	5
2-Ketogluconate Utilization	1
Entner-Doudoroff Pathway	1
Glycolysis and Gluconeogenesis	1
Glycolysis and Gluconeogenesis, including Archaeal enzymes	1
Histidine Biosynthesis	1
Homogentisate pathway of aromatic compound degradation	1
Iron acquisition in Vibrio	1
Pyruvate metabolism I: anaplerotic reactions, PEP	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fructose and mannose metabolism
• Purine metabolism
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of plant hormones
• Glycolysis / Gluconeogenesis
• Pyruvate metabolism
• Carbon fixation in photosynthetic organisms
• Biosynthesis of phenylpropanoids
• Biosynthesis of terpenoids and steroids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of alkaloids derived from terpenoid and polyketide

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
D-sorbitol degradation I	3	3	1
2-keto-L-gulonate biosynthesis	4	4	1
L-ascorbate biosynthesis III (D-sorbitol pathway)	4	3	1
anaerobic energy metabolism (invertebrates, cytosol)	7	7	1
Entner-Doudoroff pathway I	9	9	1
Entner-Doudoroff pathway III (semi-phosphorylative)	9	7	1
Entner-Doudoroff pathway II (non-phosphorylative)	9	6	1
Rubisco shunt	10	10	1
L-histidine biosynthesis	10	9	1
glycolysis IV	10	7	1
glycolysis V (Pyrococcus)	10	7	1
glycolysis III (from glucose)	11	10	1
glycolysis II (from fructose 6-phosphate)	11	10	1
glycolysis VI (from fructose)	11	8	1
homolactic fermentation	12	11	1
glycolysis I (from glucose 6-phosphate)	13	11	1
Bifidobacterium shunt	15	15	1
mixed acid fermentation	16	12	1
glycerol degradation to butanol	16	11	1
superpathway of glucose and xylose degradation	17	17	1
superpathway of glycolysis and the Entner-Doudoroff pathway	17	15	1
superpathway of anaerobic energy metabolism (invertebrates)	17	13	1
heterolactic fermentation	18	16	1
superpathway of hexitol degradation (bacteria)	18	12	1
superpathway of anaerobic sucrose degradation	19	16	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	15	1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle	22	17	1
superpathway of N-acetylneuraminate degradation	22	15	1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	22	1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)	26	19	1
1-butanol autotrophic biosynthesis (engineered)	27	21	1
superpathway of histidine, purine, and pyrimidine biosynthesis	46	43	1