Experiment set1S484 for Rhodanobacter sp000427505 FW510-R12

Compare to:

planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

200 most important genes:

  gene name fitness t score description  
LRK53_RS11185 -4.1 -1.3 DUF4115 domain-containing protein compare
LRK53_RS16345 -4.1 -2.3 hypothetical protein compare
LRK53_RS14520 -3.7 -2.0 GNAT family N-acetyltransferase compare
LRK53_RS00865 -3.6 -1.2 alpha/beta hydrolase compare
LRK53_RS06870 -3.0 -1.2 SUF system Fe-S cluster assembly regulator compare
LRK53_RS14895 -2.6 -1.8 STAS domain-containing protein compare
LRK53_RS11330 -2.6 -2.5 (d)CMP kinase compare
LRK53_RS03410 -2.4 -3.3 SCP2 sterol-binding domain-containing protein compare
LRK53_RS03330 -2.4 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS05170 -2.4 -2.3 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS05465 -2.3 -2.7 hemin uptake protein HemP compare
LRK53_RS02545 -2.3 -3.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS12880 -2.3 -2.2 hypothetical protein compare
LRK53_RS04445 -2.1 -1.5 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS05905 -2.1 -1.5 thymidylate synthase compare
LRK53_RS14865 -2.1 -2.9 CBS domain-containing protein compare
LRK53_RS15175 -2.0 -3.1 flagellar basal body rod protein FlgB compare
LRK53_RS04655 -2.0 -7.1 manganese efflux pump MntP family protein compare
LRK53_RS05565 -1.9 -1.6 H-NS histone family protein compare
LRK53_RS02990 -1.9 -1.2 pyridoxal-phosphate dependent enzyme compare
LRK53_RS01565 -1.9 -1.9 hypothetical protein compare
LRK53_RS18370 -1.9 -2.8 DUF3150 domain-containing protein compare
LRK53_RS16035 -1.9 -2.2 hypothetical protein compare
LRK53_RS07500 -1.9 -2.1 membrane protein insertion efficiency factor YidD compare
LRK53_RS14840 -1.8 -1.3 trypsin-like peptidase domain-containing protein compare
LRK53_RS16160 -1.8 -2.5 hypothetical protein compare
LRK53_RS14785 -1.8 -2.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS11620 -1.7 -2.4 hypothetical protein compare
LRK53_RS13020 -1.7 -1.4 sulfur transferase domain-containing protein compare
LRK53_RS11300 -1.7 -3.2 polysaccharide biosynthesis protein compare
LRK53_RS14800 -1.6 -6.5 DUF1631 domain-containing protein compare
LRK53_RS14455 -1.6 -1.5 ATP-binding protein compare
LRK53_RS11795 -1.6 -1.1 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS15060 -1.6 -0.9 flagellar export protein FliJ compare
LRK53_RS18120 -1.6 -2.1 energy transducer TonB compare
LRK53_RS01530 -1.6 -0.7 YiiD C-terminal domain-containing protein compare
LRK53_RS09590 -1.5 -1.8 hypothetical protein compare
LRK53_RS06640 -1.5 -3.0 ribonuclease HII compare
LRK53_RS08355 -1.5 -2.0 tryptophan synthase subunit alpha compare
LRK53_RS13965 -1.5 -2.1 NAD(P)H-dependent oxidoreductase compare
LRK53_RS05470 -1.5 -4.1 hypothetical protein compare
LRK53_RS17540 -1.4 -2.0 YbaN family protein compare
LRK53_RS12005 -1.4 -1.0 RNA polymerase sigma factor RpoE compare
LRK53_RS10085 -1.4 -1.4 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS18080 -1.4 -3.7 glucose-6-phosphate isomerase compare
LRK53_RS07045 -1.4 -1.9 response regulator compare
LRK53_RS14400 -1.4 -0.8 TetR family transcriptional regulator compare
LRK53_RS07580 -1.4 -1.7 IS256 family transposase compare
LRK53_RS04390 -1.4 -2.2 glycosyltransferase family 2 protein compare
LRK53_RS09520 -1.4 -1.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS00940 -1.3 -0.8 hypothetical protein compare
LRK53_RS06670 -1.3 -1.8 RIP metalloprotease RseP compare
LRK53_RS08420 -1.3 -3.4 MerC domain-containing protein compare
LRK53_RS13805 -1.3 -2.7 pirin family protein compare
LRK53_RS04155 -1.3 -2.0 DUF2383 domain-containing protein compare
LRK53_RS19135 -1.3 -1.9 hypothetical protein compare
LRK53_RS08350 -1.3 -2.5 tryptophan synthase subunit beta compare
LRK53_RS01570 -1.3 -2.3 DNA polymerase I compare
LRK53_RS11780 -1.3 -2.3 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS14770 -1.3 -1.9 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS05200 -1.3 -2.0 type IV pilus modification protein PilV compare
LRK53_RS04625 -1.2 -1.1 peptide chain release factor 3 compare
LRK53_RS16650 -1.2 -2.0 O-acetyl-ADP-ribose deacetylase compare
LRK53_RS14795 -1.2 -3.1 hypothetical protein compare
LRK53_RS01525 -1.2 -1.5 hypothetical protein compare
LRK53_RS17220 -1.2 -2.9 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS16640 -1.2 -1.3 hypothetical protein compare
LRK53_RS11965 -1.2 -3.7 DNA repair protein RecO compare
LRK53_RS16165 -1.2 -2.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS13060 -1.2 -0.9 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS09730 -1.2 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS16790 -1.1 -1.3 YicC family protein compare
LRK53_RS16495 -1.1 -2.8 adenosylhomocysteinase compare
LRK53_RS15870 -1.1 -3.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK53_RS06860 -1.1 -2.0 nucleotidyltransferase family protein compare
LRK53_RS07920 -1.1 -3.4 homocysteine S-methyltransferase family protein compare
LRK53_RS04640 -1.1 -1.1 helix-turn-helix domain-containing protein compare
LRK53_RS00110 -1.1 -3.0 PA0069 family radical SAM protein compare
LRK53_RS11285 -1.1 -0.9 tRNA-binding protein compare
LRK53_RS14100 -1.1 -2.3 response regulator transcription factor compare
LRK53_RS02450 -1.1 -4.1 SPFH domain-containing protein compare
LRK53_RS18670 -1.1 -2.6 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS18960 -1.1 -1.0 hypothetical protein compare
LRK53_RS07310 -1.1 -2.3 DEAD/DEAH box helicase compare
LRK53_RS11805 -1.1 -1.3 heavy metal translocating P-type ATPase compare
LRK53_RS03690 -1.1 -1.8 dihydroorotase compare
LRK53_RS07980 -1.1 -1.1 GNAT family N-acetyltransferase compare
LRK53_RS19095 -1.1 -2.9 hypothetical protein compare
LRK53_RS11425 -1.1 -1.7 RnfH family protein compare
LRK53_RS04185 -1.1 -3.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS04275 -1.1 -2.0 co-chaperone DjlA compare
LRK53_RS11155 -1.1 -4.2 glutamine-hydrolyzing GMP synthase compare
LRK53_RS09470 -1.1 -2.8 TerC family protein compare
LRK53_RS18265 -1.1 -2.0 hypothetical protein compare
LRK53_RS02340 -1.0 -2.1 isopentenyl-diphosphate Delta-isomerase compare
LRK53_RS02370 -1.0 -2.7 hypothetical protein compare
LRK53_RS15180 -1.0 -1.0 chemotaxis protein compare
LRK53_RS12670 -1.0 -3.5 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS12740 -1.0 -1.3 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS02095 -1.0 -2.3 helix-turn-helix domain-containing protein compare
LRK53_RS13695 -1.0 -1.5 response regulator compare
LRK53_RS15195 -1.0 -2.8 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS03720 -1.0 -3.9 permease-like cell division protein FtsX compare
LRK53_RS15050 -1.0 -3.3 flagellar basal body-associated FliL family protein compare
LRK53_RS00405 -1.0 -1.5 trimeric intracellular cation channel family protein compare
LRK53_RS17865 -1.0 -1.3 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS15995 -1.0 -2.8 DUF58 domain-containing protein compare
LRK53_RS11825 -1.0 -1.8 exodeoxyribonuclease VII large subunit compare
LRK53_RS06930 -1.0 -1.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS18285 -1.0 -1.9 hypothetical protein compare
LRK53_RS11035 -1.0 -1.3 major capsid protein compare
LRK53_RS12665 -0.9 -4.5 efflux transporter outer membrane subunit compare
LRK53_RS09875 -0.9 -3.2 BolA family transcriptional regulator compare
LRK53_RS08620 -0.9 -2.8 VOC family protein compare
LRK53_RS00375 -0.9 -1.0 NAD(P)-dependent oxidoreductase compare
LRK53_RS13550 -0.9 -3.5 PhoH family protein compare
LRK53_RS01660 -0.9 -1.4 hypothetical protein compare
LRK53_RS00145 -0.9 -3.1 DJ-1/PfpI family protein compare
LRK53_RS15150 -0.9 -2.3 flagellar basal-body rod protein FlgG compare
LRK53_RS17095 -0.9 -2.9 hypothetical protein compare
LRK53_RS04100 -0.9 -1.4 DUF3247 family protein compare
LRK53_RS09865 -0.9 -2.3 thioesterase compare
LRK53_RS09435 -0.9 -1.1 malate dehydrogenase compare
LRK53_RS02580 -0.9 -4.2 c-type cytochrome compare
LRK53_RS16310 -0.9 -2.6 YraN family protein compare
LRK53_RS09830 -0.9 -1.9 phosphoglycerate mutase compare
LRK53_RS17785 -0.9 -2.4 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS10470 -0.9 -1.0 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS04580 -0.9 -0.8 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS09595 -0.9 -1.0 hypothetical protein compare
LRK53_RS19000 -0.9 -3.3 hypothetical protein compare
LRK53_RS14640 -0.9 -0.6 MoaD/ThiS family protein compare
LRK53_RS07260 -0.9 -3.3 Maf family nucleotide pyrophosphatase compare
LRK53_RS16675 -0.9 -1.7 DUF58 domain-containing protein compare
LRK53_RS14110 -0.9 -1.4 GNAT family N-acetyltransferase compare
LRK53_RS06580 -0.9 -3.6 metalloprotease PmbA compare
LRK53_RS04860 -0.9 -1.3 transposase compare
LRK53_RS09620 -0.9 -2.2 hypothetical protein compare
LRK53_RS17150 -0.9 -2.5 ferredoxin family protein compare
LRK53_RS16765 -0.9 -6.2 ABC transporter substrate-binding protein compare
LRK53_RS06840 -0.9 -1.9 tRNA guanosine(34) transglycosylase Tgt compare
LRK53_RS17885 -0.8 -1.1 orotate phosphoribosyltransferase compare
LRK53_RS05395 -0.8 -2.4 transcriptional regulator NrdR compare
LRK53_RS02950 -0.8 -8.0 YbaY family lipoprotein compare
LRK53_RS15005 -0.8 -3.0 flagellar biosynthesis protein FlhF compare
LRK53_RS06545 -0.8 -2.4 TIGR02099 family protein compare
LRK53_RS08205 -0.8 -0.9 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS08425 -0.8 -2.4 cation diffusion facilitator family transporter compare
LRK53_RS15890 -0.8 -2.8 DNA starvation/stationary phase protection protein compare
LRK53_RS13830 -0.8 -2.4 hypothetical protein compare
LRK53_RS18930 -0.8 -1.6 hypothetical protein compare
LRK53_RS18665 -0.8 -2.7 hypothetical protein compare
LRK53_RS10975 -0.8 -2.2 hypothetical protein compare
LRK53_RS08070 -0.8 -2.3 DUF411 domain-containing protein compare
LRK53_RS12545 -0.8 -2.2 hypothetical protein compare
LRK53_RS13895 -0.8 -0.6 histone H1-like repetitive region-containing protein compare
LRK53_RS19145 -0.8 -3.4 hypothetical protein compare
LRK53_RS01475 -0.8 -2.2 hypothetical protein compare
LRK53_RS18125 -0.8 -0.4 hypothetical protein compare
LRK53_RS03865 -0.8 -2.5 DsbA family oxidoreductase compare
LRK53_RS17130 -0.8 -7.1 energy transducer TonB compare
LRK53_RS02885 -0.8 -2.2 glycosyltransferase family 2 protein compare
LRK53_RS05255 -0.8 -2.7 LysR substrate-binding domain-containing protein compare
LRK53_RS00550 -0.8 -2.3 serine kinase compare
LRK53_RS02335 -0.8 -1.1 hypothetical protein compare
LRK53_RS00240 -0.8 -2.6 DUF3820 family protein compare
LRK53_RS10050 -0.8 -1.7 DNA-binding domain-containing protein compare
LRK53_RS08400 -0.8 -2.5 HAMP domain-containing histidine kinase compare
LRK53_RS05360 -0.8 -1.4 peptide deformylase compare
LRK53_RS05175 -0.8 -1.0 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS08030 -0.8 -2.1 cation diffusion facilitator family transporter compare
LRK53_RS06595 -0.8 -2.1 DUF4870 domain-containing protein compare
LRK53_RS07510 -0.8 -4.7 TonB-dependent siderophore receptor compare
LRK53_RS05590 -0.8 -3.0 ribosomal protein S18-alanine N-acetyltransferase compare
LRK53_RS15730 -0.8 -1.4 HPr family phosphocarrier protein compare
LRK53_RS01190 -0.8 -2.0 hypothetical protein compare
LRK53_RS17340 -0.8 -1.5 arginase compare
LRK53_RS16195 -0.8 -2.6 Co2+/Mg2+ efflux protein ApaG compare
LRK53_RS00685 -0.8 -4.6 SIS domain-containing protein compare
LRK53_RS04815 -0.8 -1.1 IS5 family transposase compare
LRK53_RS15100 -0.8 -2.0 flagellar protein FliT compare
LRK53_RS02150 -0.7 -1.5 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS03155 -0.7 -2.3 threonine synthase compare
LRK53_RS15530 -0.7 -3.5 gluconate 2-dehydrogenase subunit 3 family protein compare
LRK53_RS01745 -0.7 -4.1 TetR/AcrR family transcriptional regulator compare
LRK53_RS14790 -0.7 -0.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS12115 -0.7 -4.1 SurA N-terminal domain-containing protein compare
LRK53_RS10235 -0.7 -2.1 DNA-binding protein compare
LRK53_RS01445 -0.7 -2.4 ABC transporter permease subunit compare
LRK53_RS14050 -0.7 -2.6 CPBP family glutamic-type intramembrane protease compare
LRK53_RS01520 -0.7 -1.9 rhodanese-like domain-containing protein compare
LRK53_RS14950 -0.7 -1.0 flagellar hook-length control protein FliK compare
LRK53_RS01435 -0.7 -2.0 alpha/beta hydrolase compare
LRK53_RS17550 -0.7 -2.9 hypothetical protein compare
LRK53_RS18375 -0.7 -2.8 hypothetical protein compare
LRK53_RS02530 -0.7 -1.4 hypothetical protein compare
LRK53_RS09355 -0.7 -3.4 carbohydrate porin compare
LRK53_RS09640 -0.7 -3.7 LacI family DNA-binding transcriptional regulator compare
LRK53_RS11565 -0.7 -1.4 nucleoside diphosphate kinase regulator compare
LRK53_RS05615 -0.7 -1.1 WGR domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For biofilm assay; planktonic sample Manganese (II) chloride tetrahydrate in Rhodanobacter sp000427505 FW510-R12

For biofilm assay; planktonic sample Manganese (II) chloride tetrahydrate across organisms