Experiment set1S483 for Paraburkholderia sabiae LMG 24235

Compare to:

Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

200 most important genes:

  gene name fitness t score description  
QEN71_RS05720 -7.4 -26.1 oxygen sensor histidine kinase FixL compare
QEN71_RS34975 -6.3 -4.4 hypothetical protein compare
QEN71_RS24090 -6.1 -16.6 NADH-quinone oxidoreductase subunit M compare
QEN71_RS21425 -5.9 -5.7 HAMP domain-containing sensor histidine kinase compare
QEN71_RS22400 -5.9 -4.1 threonine synthase compare
QEN71_RS24970 -5.8 -5.7 argininosuccinate lyase compare
QEN71_RS02785 -5.7 -13.4 ornithine carbamoyltransferase compare
QEN71_RS20840 -5.6 -5.5 DUF1109 domain-containing protein compare
QEN71_RS09470 -5.6 -3.8 hypothetical protein compare
QEN71_RS37555 -5.4 -5.3 response regulator compare
QEN71_RS35790 -5.3 -3.7 LacI family DNA-binding transcriptional regulator compare
QEN71_RS09235 -5.1 -14.7 argininosuccinate synthase compare
QEN71_RS17850 -5.1 -7.0 homoserine kinase compare
QEN71_RS01445 -5.0 -6.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS01540 -4.9 -11.5 COX15/CtaA family protein compare
QEN71_RS13105 -4.9 -7.3 ROK family transcriptional regulator compare
QEN71_RS02425 -4.8 -3.3 phosphoglycerate kinase compare
QEN71_RS21975 -4.6 -5.5 endopeptidase La compare
QEN71_RS00180 -4.6 -3.2 DUF4390 domain-containing protein compare
QEN71_RS14065 -4.5 -2.9 hypothetical protein compare
QEN71_RS27560 -4.4 -13.6 anthranilate phosphoribosyltransferase compare
QEN71_RS28080 -4.4 -11.7 diaminopimelate decarboxylase compare
QEN71_RS27005 -4.4 -7.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS38370 -4.3 -3.0 helix-turn-helix domain-containing protein compare
QEN71_RS28010 -4.3 -26.6 glutamate synthase-related protein compare
QEN71_RS24165 -4.3 -12.0 triose-phosphate isomerase compare
QEN71_RS17600 -4.1 -17.1 citrate synthase compare
QEN71_RS17655 -4.0 -16.2 tryptophan synthase subunit alpha compare
QEN71_RS17640 -4.0 -12.6 phosphoribosylanthranilate isomerase compare
QEN71_RS27940 -4.0 -3.9 FAD-dependent oxidoreductase compare
QEN71_RS28035 -4.0 -14.6 3-dehydroquinate synthase compare
QEN71_RS27440 -4.0 -3.9 division/cell wall cluster transcriptional repressor MraZ compare
QEN71_RS05215 -4.0 -14.8 chorismate synthase compare
QEN71_RS28715 -4.0 -7.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
QEN71_RS21935 -3.9 -2.7 glucose-6-phosphate isomerase compare
QEN71_RS16440 -3.8 -2.6 presqualene diphosphate synthase HpnD compare
QEN71_RS27845 -3.7 -16.8 imidazole glycerol phosphate synthase subunit HisH compare
QEN71_RS22330 -3.7 -2.5 glycosyltransferase family 39 protein compare
QEN71_RS17645 -3.7 -9.5 tryptophan synthase subunit beta compare
QEN71_RS05840 -3.7 -2.5 regulator compare
QEN71_RS24235 -3.6 -5.5 DUF3619 family protein compare
QEN71_RS22405 -3.6 -18.8 homoserine dehydrogenase compare
QEN71_RS27915 -3.6 -2.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
QEN71_RS26600 -3.5 -9.2 pyrroline-5-carboxylate reductase compare
QEN71_RS17605 -3.5 -9.2 3-isopropylmalate dehydratase large subunit compare
QEN71_RS27825 -3.5 -6.0 phosphoribosyl-ATP diphosphatase compare
QEN71_RS21920 -3.4 -21.3 phosphoribosylformylglycinamidine synthase compare
QEN71_RS27835 -3.4 -14.2 imidazole glycerol phosphate synthase subunit HisF compare
QEN71_RS19420 -3.4 -6.3 p-hydroxycinnamoyl CoA hydratase/lyase compare
QEN71_RS23370 -3.4 -3.3 arginine/ornithine succinyltransferase subunit alpha compare
QEN71_RS02440 -3.4 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS03005 -3.4 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS24215 -3.4 -11.5 ketol-acid reductoisomerase compare
QEN71_RS11395 -3.4 -5.3 hypothetical protein compare
QEN71_RS37655 -3.4 -7.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
QEN71_RS01545 -3.4 -2.3 heme o synthase compare
QEN71_RS17680 -3.3 -18.9 amidophosphoribosyltransferase compare
QEN71_RS06465 -3.3 -5.0 OmpH family outer membrane protein compare
QEN71_RS27840 -3.3 -13.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
QEN71_RS06615 -3.3 -12.4 GntR family transcriptional regulator compare
QEN71_RS02620 -3.3 -1.7 sugar-binding transcriptional regulator compare
QEN71_RS22510 -3.3 -3.2 anti-sigma factor compare
QEN71_RS17620 -3.3 -6.6 3-isopropylmalate dehydrogenase compare
QEN71_RS25690 -3.3 -2.2 glycosyltransferase family 4 protein compare
QEN71_RS06190 -3.2 -2.2 C40 family peptidase compare
QEN71_RS27565 -3.2 -7.7 indole-3-glycerol phosphate synthase TrpC compare
QEN71_RS26780 -3.2 -2.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS03970 -3.2 -4.9 tetratricopeptide repeat protein compare
QEN71_RS27870 -3.2 -16.5 ATP phosphoribosyltransferase compare
QEN71_RS24240 -3.2 -8.2 DUF3106 domain-containing protein compare
QEN71_RS02630 -3.2 -16.2 mannitol dehydrogenase family protein compare
QEN71_RS24400 -3.2 -9.8 phosphoribosylamine--glycine ligase compare
QEN71_RS25725 -3.2 -11.1 ABC transporter ATP-binding protein compare
QEN71_RS27865 -3.2 -16.6 histidinol dehydrogenase compare
QEN71_RS27830 -3.2 -4.3 phosphoribosyl-AMP cyclohydrolase compare
QEN71_RS01990 -3.2 -23.4 FAD/FMN-binding oxidoreductase compare
QEN71_RS03260 -3.2 -3.1 UbiD family decarboxylase compare
QEN71_RS26235 -3.1 -6.3 serine hydroxymethyltransferase compare
QEN71_RS22190 -3.1 -11.0 polyhydroxyalkanoate synthesis repressor PhaR compare
QEN71_RS04085 -3.1 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
QEN71_RS22250 -3.1 -8.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
QEN71_RS27785 -3.1 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS25730 -3.1 -6.2 ABC transporter permease compare
QEN71_RS23000 -3.1 -11.5 anti-sigma factor compare
QEN71_RS01440 -3.1 -2.1 S41 family peptidase compare
QEN71_RS25710 -3.1 -5.5 GNAT family N-acetyltransferase compare
QEN71_RS04070 -3.0 -10.5 prephenate dehydratase compare
QEN71_RS27550 -3.0 -20.2 anthranilate synthase component I compare
QEN71_RS26445 -3.0 -14.3 phosphoribosylformylglycinamidine cyclo-ligase compare
QEN71_RS28005 -3.0 -4.8 glutamate synthase subunit beta compare
QEN71_RS22160 -3.0 -17.2 phosphoserine phosphatase SerB compare
QEN71_RS24225 -3.0 -17.2 acetolactate synthase 3 catalytic subunit compare
QEN71_RS00290 -3.0 -17.4 homoserine O-acetyltransferase compare
QEN71_RS17615 -3.0 -5.6 3-isopropylmalate dehydratase small subunit compare
QEN71_RS02450 -3.0 -4.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
QEN71_RS06025 -2.9 -13.9 ATP phosphoribosyltransferase regulatory subunit compare
QEN71_RS27675 -2.9 -3.5 peptide chain release factor N(5)-glutamine methyltransferase compare
QEN71_RS01745 -2.9 -5.5 PTS sugar transporter subunit IIA compare
QEN71_RS02355 -2.9 -21.0 succinate--CoA ligase subunit alpha compare
QEN71_RS24565 -2.9 -6.0 DUF1841 family protein compare
QEN71_RS32200 -2.8 -10.2 MarR family transcriptional regulator compare
QEN71_RS02350 -2.8 -21.6 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS03385 -2.8 -8.8 DNA translocase FtsK compare
QEN71_RS01500 -2.7 -18.6 cytochrome c oxidase subunit I compare
QEN71_RS01985 -2.7 -16.8 threonine ammonia-lyase, biosynthetic compare
QEN71_RS05615 -2.7 -3.1 oxidative damage protection protein compare
QEN71_RS27855 -2.7 -8.6 imidazoleglycerol-phosphate dehydratase HisB compare
QEN71_RS06310 -2.7 -1.8 lysophospholipid transporter LplT compare
QEN71_RS37660 -2.7 -4.7 LysR family transcriptional regulator compare
QEN71_RS25700 -2.7 -4.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS25705 -2.6 -2.6 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS39225 -2.6 -13.9 IclR family transcriptional regulator C-terminal domain-containing protein compare
QEN71_RS24160 -2.6 -3.5 preprotein translocase subunit SecG compare
QEN71_RS27155 -2.6 -9.3 TlpA disulfide reductase family protein compare
QEN71_RS27680 -2.5 -5.8 Grx4 family monothiol glutaredoxin compare
QEN71_RS27270 -2.5 -12.9 glutamate 5-kinase compare
QEN71_RS24570 -2.5 -14.2 cytochrome c compare
QEN71_RS22705 -2.5 -7.3 TetR/AcrR family transcriptional regulator compare
QEN71_RS05070 -2.5 -2.1 ABC transporter permease compare
QEN71_RS03320 -2.5 -10.1 bifunctional transcriptional regulator/glucokinase compare
QEN71_RS27920 -2.4 -4.6 ABC transporter ATP-binding protein compare
QEN71_RS27895 -2.4 -2.3 STAS domain-containing protein compare
QEN71_RS21980 -2.4 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS41430 -2.4 -16.0 GntR family transcriptional regulator compare
QEN71_RS24005 -2.4 -2.2 putative toxin-antitoxin system toxin component, PIN family compare
QEN71_RS26460 -2.3 -8.9 HAD family hydrolase compare
QEN71_RS01465 -2.3 -18.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS01460 -2.3 -7.3 protein-export chaperone SecB compare
QEN71_RS34665 -2.3 -2.7 hypothetical protein compare
QEN71_RS25695 -2.3 -9.1 glycosyltransferase family 4 protein compare
QEN71_RS02150 -2.3 -3.7 lysophospholipid acyltransferase family protein compare
QEN71_RS00185 -2.3 -7.5 PAS domain-containing sensor histidine kinase compare
QEN71_RS24575 -2.3 -10.4 cytochrome c compare
QEN71_RS25630 -2.3 -4.7 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS04445 -2.3 -6.9 nicotinate phosphoribosyltransferase compare
QEN71_RS01420 -2.2 -6.3 PTS sugar transporter subunit IIB compare
QEN71_RS35560 -2.2 -11.5 IclR family transcriptional regulator compare
QEN71_RS22195 -2.2 -8.7 3-ketoacyl-ACP reductase compare
QEN71_RS05085 -2.2 -7.4 inositol 2-dehydrogenase compare
QEN71_RS27105 -2.2 -3.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
QEN71_RS04065 -2.2 -11.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
QEN71_RS25720 -2.2 -5.6 SAM-dependent methyltransferase compare
QEN71_RS16170 -2.2 -3.0 periplasmic heavy metal sensor compare
QEN71_RS25420 -2.2 -6.6 oligosaccharide flippase family protein compare
QEN71_RS39095 -2.2 -4.1 aldolase compare
QEN71_RS25255 -2.2 -10.2 nitrite/sulfite reductase compare
QEN71_RS35720 -2.2 -5.6 LacI family DNA-binding transcriptional regulator compare
QEN71_RS04710 -2.2 -12.2 trehalose-phosphatase compare
QEN71_RS26855 -2.2 -2.1 dihydroorotase compare
QEN71_RS25260 -2.2 -12.7 CysB family HTH-type transcriptional regulator compare
QEN71_RS26480 -2.2 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS02345 -2.1 -2.6 DUF2889 domain-containing protein compare
QEN71_RS05055 -2.1 -7.8 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) compare
QEN71_RS05060 -2.1 -9.6 5-dehydro-2-deoxygluconokinase compare
QEN71_RS27345 -2.1 -2.4 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
QEN71_RS05360 -2.1 -4.0 helix-turn-helix transcriptional regulator compare
QEN71_RS09485 -2.1 -6.9 GntR family transcriptional regulator compare
QEN71_RS25715 -2.1 -5.2 acetyltransferase compare
QEN71_RS27900 -2.1 -5.6 ABC transporter substrate-binding protein compare
QEN71_RS27110 -2.1 -10.6 2-dehydro-3-deoxygalactonokinase compare
QEN71_RS07025 -2.1 -2.5 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
QEN71_RS01520 -2.1 -10.8 cytochrome c oxidase subunit 3 compare
QEN71_RS22015 -2.0 -8.7 squalene/phytoene synthase family protein compare
QEN71_RS25220 -2.0 -3.7 CbiX/SirB N-terminal domain-containing protein compare
QEN71_RS27685 -2.0 -3.0 UbiX family flavin prenyltransferase compare
QEN71_RS04080 -2.0 -8.7 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
QEN71_RS28070 -2.0 -4.2 iron donor protein CyaY compare
QEN71_RS32570 -2.0 -2.0 NIPSNAP family protein compare
QEN71_RS24395 -2.0 -5.5 YebC/PmpR family DNA-binding transcriptional regulator compare
QEN71_RS25425 -2.0 -4.3 glycosyltransferase compare
QEN71_RS00625 -2.0 -8.2 H-NS histone family protein compare
QEN71_RS30280 -2.0 -2.2 alpha/beta hydrolase compare
QEN71_RS02105 -1.9 -13.0 nucleotidyltransferase family protein compare
QEN71_RS27025 -1.9 -10.7 barstar family protein compare
QEN71_RS30900 -1.9 -1.4 histidine kinase compare
QEN71_RS24955 -1.9 -14.7 phosphoenolpyruvate carboxylase compare
QEN71_RS16400 -1.9 -9.8 adenosyl-hopene transferase HpnH compare
QEN71_RS05065 -1.9 -4.7 ATP-binding cassette domain-containing protein compare
QEN71_RS30565 -1.9 -2.3 MarR family transcriptional regulator compare
QEN71_RS24220 -1.9 -5.0 acetolactate synthase small subunit compare
QEN71_RS05075 -1.9 -8.2 sugar ABC transporter substrate-binding protein compare
QEN71_RS27555 -1.9 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
QEN71_RS08645 -1.9 -2.3 GTP cyclohydrolase II compare
QEN71_RS01165 -1.9 -6.2 thiol:disulfide interchange protein DsbA/DsbL compare
QEN71_RS05450 -1.8 -3.0 outer membrane protein assembly factor BamC compare
QEN71_RS34625 -1.8 -1.8 hypothetical protein compare
QEN71_RS10600 -1.8 -1.6 hypothetical protein compare
QEN71_RS22785 -1.8 -2.1 hypothetical protein compare
QEN71_RS01240 -1.8 -2.2 acyl-ACP desaturase compare
QEN71_RS05050 -1.8 -6.2 myo-inosose-2 dehydratase compare
QEN71_RS02055 -1.8 -9.7 TetR/AcrR family transcriptional regulator compare
QEN71_RS22205 -1.8 -12.7 class I poly(R)-hydroxyalkanoic acid synthase compare
QEN71_RS44240 -1.8 -2.2 transposase compare
QEN71_RS26395 -1.8 -1.7 hypothetical protein compare
QEN71_RS41735 -1.8 -1.3 DUF1488 family protein compare
QEN71_RS08340 -1.8 -1.6 electron transfer flavoprotein subunit beta/FixA family protein compare
QEN71_RS14015 -1.7 -7.7 substrate-binding domain-containing protein compare
QEN71_RS22425 -1.7 -6.5 SMR family transporter compare
QEN71_RS26230 -1.7 -3.5 transcriptional regulator NrdR compare
QEN71_RS39540 -1.7 -3.8 IclR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment