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Experiment set1S483 for
Paraburkholderia sabiae LMG 24235
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Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
200 most important genes:
gene
name
fitness
t score
description
QEN71
_RS05720
-7.4
-26.1
oxygen sensor histidine kinase FixL
compare
QEN71
_RS34975
-6.3
-4.4
hypothetical protein
compare
QEN71
_RS24090
-6.1
-16.6
NADH-quinone oxidoreductase subunit M
compare
QEN71
_RS21425
-5.9
-5.7
HAMP domain-containing sensor histidine kinase
compare
QEN71
_RS22400
-5.9
-4.1
threonine synthase
compare
QEN71
_RS24970
-5.8
-5.7
argininosuccinate lyase
compare
QEN71
_RS02785
-5.7
-13.4
ornithine carbamoyltransferase
compare
QEN71
_RS20840
-5.6
-5.5
DUF1109 domain-containing protein
compare
QEN71
_RS09470
-5.6
-3.8
hypothetical protein
compare
QEN71
_RS37555
-5.4
-5.3
response regulator
compare
QEN71
_RS35790
-5.3
-3.7
LacI family DNA-binding transcriptional regulator
compare
QEN71
_RS09235
-5.1
-14.7
argininosuccinate synthase
compare
QEN71
_RS17850
-5.1
-7.0
homoserine kinase
compare
QEN71
_RS01445
-5.0
-6.8
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
compare
QEN71
_RS01540
-4.9
-11.5
COX15/CtaA family protein
compare
QEN71
_RS13105
-4.9
-7.3
ROK family transcriptional regulator
compare
QEN71
_RS02425
-4.8
-3.3
phosphoglycerate kinase
compare
QEN71
_RS21975
-4.6
-5.5
endopeptidase La
compare
QEN71
_RS00180
-4.6
-3.2
DUF4390 domain-containing protein
compare
QEN71
_RS14065
-4.5
-2.9
hypothetical protein
compare
QEN71
_RS27560
-4.4
-13.6
anthranilate phosphoribosyltransferase
compare
QEN71
_RS28080
-4.4
-11.7
diaminopimelate decarboxylase
compare
QEN71
_RS27005
-4.4
-7.8
type I glyceraldehyde-3-phosphate dehydrogenase
compare
QEN71
_RS38370
-4.3
-3.0
helix-turn-helix domain-containing protein
compare
QEN71
_RS28010
-4.3
-26.6
glutamate synthase-related protein
compare
QEN71
_RS24165
-4.3
-12.0
triose-phosphate isomerase
compare
QEN71
_RS17600
-4.1
-17.1
citrate synthase
compare
QEN71
_RS17655
-4.0
-16.2
tryptophan synthase subunit alpha
compare
QEN71
_RS17640
-4.0
-12.6
phosphoribosylanthranilate isomerase
compare
QEN71
_RS27940
-4.0
-3.9
FAD-dependent oxidoreductase
compare
QEN71
_RS28035
-4.0
-14.6
3-dehydroquinate synthase
compare
QEN71
_RS27440
-4.0
-3.9
division/cell wall cluster transcriptional repressor MraZ
compare
QEN71
_RS05215
-4.0
-14.8
chorismate synthase
compare
QEN71
_RS28715
-4.0
-7.6
methylenetetrahydrofolate reductase [NAD(P)H]
compare
QEN71
_RS21935
-3.9
-2.7
glucose-6-phosphate isomerase
compare
QEN71
_RS16440
-3.8
-2.6
presqualene diphosphate synthase HpnD
compare
QEN71
_RS27845
-3.7
-16.8
imidazole glycerol phosphate synthase subunit HisH
compare
QEN71
_RS22330
-3.7
-2.5
glycosyltransferase family 39 protein
compare
QEN71
_RS17645
-3.7
-9.5
tryptophan synthase subunit beta
compare
QEN71
_RS05840
-3.7
-2.5
regulator
compare
QEN71
_RS24235
-3.6
-5.5
DUF3619 family protein
compare
QEN71
_RS22405
-3.6
-18.8
homoserine dehydrogenase
compare
QEN71
_RS27915
-3.6
-2.5
lipid asymmetry maintenance ABC transporter permease subunit MlaE
compare
QEN71
_RS26600
-3.5
-9.2
pyrroline-5-carboxylate reductase
compare
QEN71
_RS17605
-3.5
-9.2
3-isopropylmalate dehydratase large subunit
compare
QEN71
_RS27825
-3.5
-6.0
phosphoribosyl-ATP diphosphatase
compare
QEN71
_RS21920
-3.4
-21.3
phosphoribosylformylglycinamidine synthase
compare
QEN71
_RS27835
-3.4
-14.2
imidazole glycerol phosphate synthase subunit HisF
compare
QEN71
_RS19420
-3.4
-6.3
p-hydroxycinnamoyl CoA hydratase/lyase
compare
QEN71
_RS23370
-3.4
-3.3
arginine/ornithine succinyltransferase subunit alpha
compare
QEN71
_RS02440
-3.4
-5.1
phosphoribosylaminoimidazolesuccinocarboxamide synthase
compare
QEN71
_RS03005
-3.4
-2.3
ATP-dependent Clp protease ATP-binding subunit ClpA
compare
QEN71
_RS24215
-3.4
-11.5
ketol-acid reductoisomerase
compare
QEN71
_RS11395
-3.4
-5.3
hypothetical protein
compare
QEN71
_RS37655
-3.4
-7.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
compare
QEN71
_RS01545
-3.4
-2.3
heme o synthase
compare
QEN71
_RS17680
-3.3
-18.9
amidophosphoribosyltransferase
compare
QEN71
_RS06465
-3.3
-5.0
OmpH family outer membrane protein
compare
QEN71
_RS27840
-3.3
-13.7
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
compare
QEN71
_RS06615
-3.3
-12.4
GntR family transcriptional regulator
compare
QEN71
_RS02620
-3.3
-1.7
sugar-binding transcriptional regulator
compare
QEN71
_RS22510
-3.3
-3.2
anti-sigma factor
compare
QEN71
_RS17620
-3.3
-6.6
3-isopropylmalate dehydrogenase
compare
QEN71
_RS25690
-3.3
-2.2
glycosyltransferase family 4 protein
compare
QEN71
_RS06190
-3.2
-2.2
C40 family peptidase
compare
QEN71
_RS27565
-3.2
-7.7
indole-3-glycerol phosphate synthase TrpC
compare
QEN71
_RS26780
-3.2
-2.2
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
compare
QEN71
_RS03970
-3.2
-4.9
tetratricopeptide repeat protein
compare
QEN71
_RS27870
-3.2
-16.5
ATP phosphoribosyltransferase
compare
QEN71
_RS24240
-3.2
-8.2
DUF3106 domain-containing protein
compare
QEN71
_RS02630
-3.2
-16.2
mannitol dehydrogenase family protein
compare
QEN71
_RS24400
-3.2
-9.8
phosphoribosylamine--glycine ligase
compare
QEN71
_RS25725
-3.2
-11.1
ABC transporter ATP-binding protein
compare
QEN71
_RS27865
-3.2
-16.6
histidinol dehydrogenase
compare
QEN71
_RS27830
-3.2
-4.3
phosphoribosyl-AMP cyclohydrolase
compare
QEN71
_RS01990
-3.2
-23.4
FAD/FMN-binding oxidoreductase
compare
QEN71
_RS03260
-3.2
-3.1
UbiD family decarboxylase
compare
QEN71
_RS26235
-3.1
-6.3
serine hydroxymethyltransferase
compare
QEN71
_RS22190
-3.1
-11.0
polyhydroxyalkanoate synthesis repressor PhaR
compare
QEN71
_RS04085
-3.1
-8.0
3-phosphoshikimate 1-carboxyvinyltransferase
compare
QEN71
_RS22250
-3.1
-8.6
protein-L-isoaspartate(D-aspartate) O-methyltransferase
compare
QEN71
_RS27785
-3.1
-2.1
ubiquinol-cytochrome c reductase iron-sulfur subunit
compare
QEN71
_RS25730
-3.1
-6.2
ABC transporter permease
compare
QEN71
_RS23000
-3.1
-11.5
anti-sigma factor
compare
QEN71
_RS01440
-3.1
-2.1
S41 family peptidase
compare
QEN71
_RS25710
-3.1
-5.5
GNAT family N-acetyltransferase
compare
QEN71
_RS04070
-3.0
-10.5
prephenate dehydratase
compare
QEN71
_RS27550
-3.0
-20.2
anthranilate synthase component I
compare
QEN71
_RS26445
-3.0
-14.3
phosphoribosylformylglycinamidine cyclo-ligase
compare
QEN71
_RS28005
-3.0
-4.8
glutamate synthase subunit beta
compare
QEN71
_RS22160
-3.0
-17.2
phosphoserine phosphatase SerB
compare
QEN71
_RS24225
-3.0
-17.2
acetolactate synthase 3 catalytic subunit
compare
QEN71
_RS00290
-3.0
-17.4
homoserine O-acetyltransferase
compare
QEN71
_RS17615
-3.0
-5.6
3-isopropylmalate dehydratase small subunit
compare
QEN71
_RS02450
-3.0
-4.0
5-(carboxyamino)imidazole ribonucleotide synthase
compare
QEN71
_RS06025
-2.9
-13.9
ATP phosphoribosyltransferase regulatory subunit
compare
QEN71
_RS27675
-2.9
-3.5
peptide chain release factor N(5)-glutamine methyltransferase
compare
QEN71
_RS01745
-2.9
-5.5
PTS sugar transporter subunit IIA
compare
QEN71
_RS02355
-2.9
-21.0
succinate--CoA ligase subunit alpha
compare
QEN71
_RS24565
-2.9
-6.0
DUF1841 family protein
compare
QEN71
_RS32200
-2.8
-10.2
MarR family transcriptional regulator
compare
QEN71
_RS02350
-2.8
-21.6
ADP-forming succinate--CoA ligase subunit beta
compare
QEN71
_RS03385
-2.8
-8.8
DNA translocase FtsK
compare
QEN71
_RS01500
-2.7
-18.6
cytochrome c oxidase subunit I
compare
QEN71
_RS01985
-2.7
-16.8
threonine ammonia-lyase, biosynthetic
compare
QEN71
_RS05615
-2.7
-3.1
oxidative damage protection protein
compare
QEN71
_RS27855
-2.7
-8.6
imidazoleglycerol-phosphate dehydratase HisB
compare
QEN71
_RS06310
-2.7
-1.8
lysophospholipid transporter LplT
compare
QEN71
_RS37660
-2.7
-4.7
LysR family transcriptional regulator
compare
QEN71
_RS25700
-2.7
-4.4
DegT/DnrJ/EryC1/StrS family aminotransferase
compare
QEN71
_RS25705
-2.6
-2.6
FdtA/QdtA family cupin domain-containing protein
compare
QEN71
_RS39225
-2.6
-13.9
IclR family transcriptional regulator C-terminal domain-containing protein
compare
QEN71
_RS24160
-2.6
-3.5
preprotein translocase subunit SecG
compare
QEN71
_RS27155
-2.6
-9.3
TlpA disulfide reductase family protein
compare
QEN71
_RS27680
-2.5
-5.8
Grx4 family monothiol glutaredoxin
compare
QEN71
_RS27270
-2.5
-12.9
glutamate 5-kinase
compare
QEN71
_RS24570
-2.5
-14.2
cytochrome c
compare
QEN71
_RS22705
-2.5
-7.3
TetR/AcrR family transcriptional regulator
compare
QEN71
_RS05070
-2.5
-2.1
ABC transporter permease
compare
QEN71
_RS03320
-2.5
-10.1
bifunctional transcriptional regulator/glucokinase
compare
QEN71
_RS27920
-2.4
-4.6
ABC transporter ATP-binding protein
compare
QEN71
_RS27895
-2.4
-2.3
STAS domain-containing protein
compare
QEN71
_RS21980
-2.4
-5.5
ATP-dependent Clp protease ATP-binding subunit ClpX
compare
QEN71
_RS41430
-2.4
-16.0
GntR family transcriptional regulator
compare
QEN71
_RS24005
-2.4
-2.2
putative toxin-antitoxin system toxin component, PIN family
compare
QEN71
_RS26460
-2.3
-8.9
HAD family hydrolase
compare
QEN71
_RS01465
-2.3
-18.6
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
compare
QEN71
_RS01460
-2.3
-7.3
protein-export chaperone SecB
compare
QEN71
_RS34665
-2.3
-2.7
hypothetical protein
compare
QEN71
_RS25695
-2.3
-9.1
glycosyltransferase family 4 protein
compare
QEN71
_RS02150
-2.3
-3.7
lysophospholipid acyltransferase family protein
compare
QEN71
_RS00185
-2.3
-7.5
PAS domain-containing sensor histidine kinase
compare
QEN71
_RS24575
-2.3
-10.4
cytochrome c
compare
QEN71
_RS25630
-2.3
-4.7
NAD-dependent epimerase/dehydratase family protein
compare
QEN71
_RS04445
-2.3
-6.9
nicotinate phosphoribosyltransferase
compare
QEN71
_RS01420
-2.2
-6.3
PTS sugar transporter subunit IIB
compare
QEN71
_RS35560
-2.2
-11.5
IclR family transcriptional regulator
compare
QEN71
_RS22195
-2.2
-8.7
3-ketoacyl-ACP reductase
compare
QEN71
_RS05085
-2.2
-7.4
inositol 2-dehydrogenase
compare
QEN71
_RS27105
-2.2
-3.4
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
compare
QEN71
_RS04065
-2.2
-11.0
3-phosphoserine/phosphohydroxythreonine transaminase
compare
QEN71
_RS25720
-2.2
-5.6
SAM-dependent methyltransferase
compare
QEN71
_RS16170
-2.2
-3.0
periplasmic heavy metal sensor
compare
QEN71
_RS25420
-2.2
-6.6
oligosaccharide flippase family protein
compare
QEN71
_RS39095
-2.2
-4.1
aldolase
compare
QEN71
_RS25255
-2.2
-10.2
nitrite/sulfite reductase
compare
QEN71
_RS35720
-2.2
-5.6
LacI family DNA-binding transcriptional regulator
compare
QEN71
_RS04710
-2.2
-12.2
trehalose-phosphatase
compare
QEN71
_RS26855
-2.2
-2.1
dihydroorotase
compare
QEN71
_RS25260
-2.2
-12.7
CysB family HTH-type transcriptional regulator
compare
QEN71
_RS26480
-2.2
-3.2
3-methyl-2-oxobutanoate hydroxymethyltransferase
compare
QEN71
_RS02345
-2.1
-2.6
DUF2889 domain-containing protein
compare
QEN71
_RS05055
-2.1
-7.8
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
compare
QEN71
_RS05060
-2.1
-9.6
5-dehydro-2-deoxygluconokinase
compare
QEN71
_RS27345
-2.1
-2.4
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
compare
QEN71
_RS05360
-2.1
-4.0
helix-turn-helix transcriptional regulator
compare
QEN71
_RS09485
-2.1
-6.9
GntR family transcriptional regulator
compare
QEN71
_RS25715
-2.1
-5.2
acetyltransferase
compare
QEN71
_RS27900
-2.1
-5.6
ABC transporter substrate-binding protein
compare
QEN71
_RS27110
-2.1
-10.6
2-dehydro-3-deoxygalactonokinase
compare
QEN71
_RS07025
-2.1
-2.5
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
compare
QEN71
_RS01520
-2.1
-10.8
cytochrome c oxidase subunit 3
compare
QEN71
_RS22015
-2.0
-8.7
squalene/phytoene synthase family protein
compare
QEN71
_RS25220
-2.0
-3.7
CbiX/SirB N-terminal domain-containing protein
compare
QEN71
_RS27685
-2.0
-3.0
UbiX family flavin prenyltransferase
compare
QEN71
_RS04080
-2.0
-8.7
prephenate dehydrogenase/arogenate dehydrogenase family protein
compare
QEN71
_RS28070
-2.0
-4.2
iron donor protein CyaY
compare
QEN71
_RS32570
-2.0
-2.0
NIPSNAP family protein
compare
QEN71
_RS24395
-2.0
-5.5
YebC/PmpR family DNA-binding transcriptional regulator
compare
QEN71
_RS25425
-2.0
-4.3
glycosyltransferase
compare
QEN71
_RS00625
-2.0
-8.2
H-NS histone family protein
compare
QEN71
_RS30280
-2.0
-2.2
alpha/beta hydrolase
compare
QEN71
_RS02105
-1.9
-13.0
nucleotidyltransferase family protein
compare
QEN71
_RS27025
-1.9
-10.7
barstar family protein
compare
QEN71
_RS30900
-1.9
-1.4
histidine kinase
compare
QEN71
_RS24955
-1.9
-14.7
phosphoenolpyruvate carboxylase
compare
QEN71
_RS16400
-1.9
-9.8
adenosyl-hopene transferase HpnH
compare
QEN71
_RS05065
-1.9
-4.7
ATP-binding cassette domain-containing protein
compare
QEN71
_RS30565
-1.9
-2.3
MarR family transcriptional regulator
compare
QEN71
_RS24220
-1.9
-5.0
acetolactate synthase small subunit
compare
QEN71
_RS05075
-1.9
-8.2
sugar ABC transporter substrate-binding protein
compare
QEN71
_RS27555
-1.9
-3.6
aminodeoxychorismate/anthranilate synthase component II
compare
QEN71
_RS08645
-1.9
-2.3
GTP cyclohydrolase II
compare
QEN71
_RS01165
-1.9
-6.2
thiol:disulfide interchange protein DsbA/DsbL
compare
QEN71
_RS05450
-1.8
-3.0
outer membrane protein assembly factor BamC
compare
QEN71
_RS34625
-1.8
-1.8
hypothetical protein
compare
QEN71
_RS10600
-1.8
-1.6
hypothetical protein
compare
QEN71
_RS22785
-1.8
-2.1
hypothetical protein
compare
QEN71
_RS01240
-1.8
-2.2
acyl-ACP desaturase
compare
QEN71
_RS05050
-1.8
-6.2
myo-inosose-2 dehydratase
compare
QEN71
_RS02055
-1.8
-9.7
TetR/AcrR family transcriptional regulator
compare
QEN71
_RS22205
-1.8
-12.7
class I poly(R)-hydroxyalkanoic acid synthase
compare
QEN71
_RS44240
-1.8
-2.2
transposase
compare
QEN71
_RS26395
-1.8
-1.7
hypothetical protein
compare
QEN71
_RS41735
-1.8
-1.3
DUF1488 family protein
compare
QEN71
_RS08340
-1.8
-1.6
electron transfer flavoprotein subunit beta/FixA family protein
compare
QEN71
_RS14015
-1.7
-7.7
substrate-binding domain-containing protein
compare
QEN71
_RS22425
-1.7
-6.5
SMR family transporter
compare
QEN71
_RS26230
-1.7
-3.5
transcriptional regulator NrdR
compare
QEN71
_RS39540
-1.7
-3.8
IclR family transcriptional regulator
compare
Specific Phenotypes
For 6 genes in this experiment