Experiment set1S483 for Paraburkholderia sabiae LMG 24235
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Group: in plantaMedia:
Culturing: Psabiae_ML3b, pot, at 20 (C), (Solid)
By: Marta Torres on 12/5/24
Specific Phenotypes
For 6 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Inositol catabolism | 4 |
| Coenzyme PQQ synthesis | 1 |
| Nitrate and nitrite ammonification | 1 |
| Pyrroloquinoline Quinone biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Inositol phosphate metabolism
- Ascorbate and aldarate metabolism
- 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation
- Phenylalanine metabolism
- Benzoate degradation via hydroxylation
- Streptomycin biosynthesis
- Biphenyl degradation
- Benzoate degradation via CoA ligation
- Ethylbenzene degradation
- Nicotinate and nicotinamide metabolism
- Limonene and pinene degradation
- Nitrogen metabolism
- Caprolactam degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| myo-inositol degradation I | 7 | 6 | 3 |
| myo-, chiro- and scyllo-inositol degradation | 10 | 6 | 3 |
| myo-inositol degradation II | 5 | 1 | 1 |
| streptomycin biosynthesis | 18 | 2 | 1 |