Experiment set1S48 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.1 -15.3 Pca regulon regulatory protein compare
MPMX19_05680 -2.9 -4.0 Cell cycle response regulator CtrA compare
MPMX19_00705 -2.5 -3.0 Cell division coordinator CpoB compare
MPMX19_04208 -2.4 -4.8 flagellum biosynthesis repressor protein FlbT compare
MPMX19_02531 -2.2 -2.6 hypothetical protein compare
MPMX19_04112 -2.2 -5.9 hypothetical protein compare
MPMX19_04114 -2.2 -5.7 hypothetical protein compare
MPMX19_04000 -2.2 -5.1 Flagellar motor switch protein FliG compare
MPMX19_04087 -2.2 -4.0 Flagellum site-determining protein YlxH compare
MPMX19_02267 -2.1 -1.4 hypothetical protein compare
MPMX19_01483 -2.1 -11.9 Flagellar basal-body rod protein FlgG compare
MPMX19_01053 -2.0 -4.6 Dihydroorotase compare
MPMX19_05678 -2.0 -7.1 hypothetical protein compare
MPMX19_06547 -2.0 -7.3 hypothetical protein compare
MPMX19_01054 -1.9 -6.1 Aspartate carbamoyltransferase compare
MPMX19_02657 -1.9 -15.1 Glutamate synthase [NADPH] large chain compare
MPMX19_00128 -1.9 -12.0 hypothetical protein compare
MPMX19_04093 -1.9 -4.4 hypothetical protein compare
MPMX19_00152 -1.8 -2.0 hypothetical protein compare
MPMX19_00867 -1.8 -13.5 Flagellar biosynthetic protein FlhB compare
MPMX19_02658 -1.8 -11.5 Glutamate synthase [NADPH] small chain compare
MPMX19_05679 -1.8 -9.1 Flagellum-specific ATP synthase compare
MPMX19_04644 -1.8 -2.1 hypothetical protein compare
MPMX19_02268 -1.7 -3.6 hypothetical protein compare
MPMX19_00862 -1.7 -8.7 hypothetical protein compare
MPMX19_01084 -1.7 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_04092 -1.7 -7.6 Flagellar motor switch protein FliN compare
MPMX19_02981 -1.7 -5.5 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01484 -1.6 -6.6 Flagellar basal-body rod protein FlgG compare
MPMX19_00126 -1.6 -2.7 hypothetical protein compare
MPMX19_01796 -1.6 -2.6 hypothetical protein compare
MPMX19_02543 -1.6 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00530 -1.6 -3.5 Orotate phosphoribosyltransferase compare
MPMX19_01560 -1.5 -3.3 3'-5' exonuclease DinG compare
MPMX19_04094 -1.5 -8.5 Flagellar M-ring protein compare
MPMX19_04222 -1.5 -10.8 hypothetical protein compare
MPMX19_03859 -1.4 -3.1 hypothetical protein compare
MPMX19_00863 -1.4 -7.0 Flagellar basal-body rod protein FlgC compare
MPMX19_04149 -1.4 -2.7 hypothetical protein compare
MPMX19_04584 -1.4 -3.5 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05818 -1.4 -2.3 hypothetical protein compare
MPMX19_00503 -1.3 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_00838 -1.3 -2.9 GTP pyrophosphokinase rsh compare
MPMX19_01630 -1.3 -3.8 Phosphoribosylamine--glycine ligase compare
MPMX19_06297 -1.3 -1.7 hypothetical protein compare
MPMX19_01883 -1.3 -5.3 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_01497 -1.3 -3.0 hypothetical protein compare
MPMX19_00311 -1.3 -10.5 hypothetical protein compare
MPMX19_00262 -1.2 -1.7 Thiazole synthase compare
MPMX19_02136 -1.2 -1.5 Phage shock protein A compare
MPMX19_04089 -1.2 -9.0 Flagellar biosynthesis protein FlhA compare
MPMX19_03196 -1.2 -2.5 hypothetical protein compare
MPMX19_00858 -1.2 -4.4 Flagellar biosynthetic protein FliP compare
MPMX19_00854 -1.2 -10.4 hypothetical protein compare
MPMX19_00714 -1.2 -5.2 Ferrous-iron efflux pump FieF compare
MPMX19_01545 -1.2 -1.6 Lon protease compare
MPMX19_02980 -1.2 -2.1 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_02674 -1.2 -2.1 NADH:quinone reductase compare
MPMX19_00866 -1.2 -6.2 Flagellar biosynthetic protein FliR compare
MPMX19_02951 -1.2 -1.9 Deoxyribose-phosphate aldolase 1 compare
MPMX19_06419 -1.1 -2.6 IS110 family transposase ISHne3 compare
MPMX19_01822 -1.1 -4.7 2-isopropylmalate synthase compare
MPMX19_06880 -1.1 -2.0 Validamycin A dioxygenase compare
MPMX19_05217 -1.1 -1.8 Flagellin compare
MPMX19_01014 -1.1 -4.2 Indole-3-glycerol phosphate synthase compare
MPMX19_05915 -1.1 -2.5 Flagellar M-ring protein compare
MPMX19_01597 -1.1 -1.9 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_04218 -1.1 -4.6 Protein phosphatase PrpC compare
MPMX19_01714 -1.1 -1.6 tRNA-modifying protein YgfZ compare
MPMX19_06644 -1.1 -8.9 GDP-mannose 4,6-dehydratase compare
MPMX19_01201 -1.1 -2.6 hypothetical protein compare
MPMX19_02675 -1.1 -7.8 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_00906 -1.0 -7.5 Amidophosphoribosyltransferase compare
MPMX19_03295 -1.0 -2.3 HTH-type transcriptional regulator McbR compare
MPMX19_00504 -1.0 -3.2 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_01297 -1.0 -1.9 hypothetical protein compare
MPMX19_06746 -1.0 -1.7 Chemotaxis protein CheW compare
MPMX19_01884 -1.0 -2.4 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_01496 -1.0 -5.5 hypothetical protein compare
MPMX19_06001 -1.0 -3.5 hypothetical protein compare
MPMX19_02303 -1.0 -2.1 hypothetical protein compare
MPMX19_04010 -1.0 -2.2 Isoaspartyl peptidase compare
MPMX19_03213 -1.0 -2.3 hypothetical protein compare
MPMX19_00976 -1.0 -2.0 ATP-dependent RNA helicase RhlE compare
MPMX19_05089 -1.0 -3.2 Acetyl-CoA acetyltransferase compare
MPMX19_02664 -1.0 -1.3 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_05714 -1.0 -5.4 hypothetical protein compare
MPMX19_02742 -1.0 -2.1 hypothetical protein compare
MPMX19_00687 -1.0 -1.7 hypothetical protein compare
MPMX19_00182 -1.0 -1.4 hypothetical protein compare
MPMX19_01939 -0.9 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_05016 -0.9 -1.4 Sensor histidine kinase RcsC compare
MPMX19_06897 -0.9 -1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06734 -0.9 -7.9 Alginate biosynthesis protein AlgA compare
MPMX19_04954 -0.9 -1.8 Putative hydro-lyase compare
MPMX19_01394 -0.9 -1.0 hypothetical protein compare
MPMX19_06545 -0.9 -7.7 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_04835 -0.9 -2.0 hypothetical protein compare
MPMX19_02714 -0.9 -1.9 hypothetical protein compare
MPMX19_00841 -0.9 -1.6 Holo-[acyl-carrier-protein] synthase compare
MPMX19_02736 -0.9 -5.7 Tryptophan synthase beta chain compare
MPMX19_02553 -0.9 -3.5 Protein-export protein SecB compare
MPMX19_04205 -0.9 -2.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00864 -0.9 -2.4 Flagellar hook-basal body complex protein FliE compare
MPMX19_01494 -0.9 -5.1 Flagellar P-ring protein compare
MPMX19_04391 -0.9 -4.6 Homoserine O-acetyltransferase compare
MPMX19_01495 -0.9 -1.4 hypothetical protein compare
MPMX19_05690 -0.9 -4.5 Protein phosphotransferase ChpT compare
MPMX19_01304 -0.9 -5.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_00304 -0.8 -2.1 Phosphatidylcholine synthase compare
MPMX19_02116 -0.8 -1.7 Cold shock protein CspA compare
MPMX19_05796 -0.8 -2.9 HTH-type transcriptional repressor BdcR compare
MPMX19_00794 -0.8 -2.6 Transcriptional activator protein CopR compare
MPMX19_01353 -0.8 -1.6 hypothetical protein compare
MPMX19_04673 -0.8 -2.3 Purine ribonucleoside efflux pump NepI compare
MPMX19_01777 -0.8 -2.0 2-aminoadipate transaminase compare
MPMX19_04254 -0.8 -3.1 NADP-dependent malic enzyme compare
MPMX19_02962 -0.8 -3.1 hypothetical protein compare
MPMX19_05388 -0.8 -2.4 Leucine-responsive regulatory protein compare
MPMX19_04869 -0.8 -2.9 DNA polymerase I compare
MPMX19_05215 -0.8 -2.4 hypothetical protein compare
MPMX19_00319 -0.8 -1.2 hypothetical protein compare
MPMX19_05070 -0.8 -3.7 hypothetical protein compare
MPMX19_01485 -0.8 -5.2 hypothetical protein compare
MPMX19_03421 -0.8 -1.9 hypothetical protein compare
MPMX19_02511 -0.8 -1.2 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_02195 -0.8 -3.1 Recombination protein RecR compare
MPMX19_00139 -0.8 -2.5 hypothetical protein compare
MPMX19_04863 -0.8 -1.3 Transcriptional regulatory protein LnrK compare
MPMX19_00184 -0.8 -3.1 hypothetical protein compare
MPMX19_05727 -0.8 -3.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_02011 -0.8 -2.0 RNA helicase CrhR compare
MPMX19_05896 -0.7 -1.7 hypothetical protein compare
MPMX19_06236 -0.7 -1.9 hypothetical protein compare
MPMX19_05458 -0.7 -2.0 hypothetical protein compare
MPMX19_03389 -0.7 -2.4 Carbon monoxide dehydrogenase small chain compare
MPMX19_00191 -0.7 -2.1 hypothetical protein compare
MPMX19_04323 -0.7 -1.9 Segregation and condensation protein B compare
MPMX19_00173 -0.7 -2.1 hypothetical protein compare
MPMX19_00094 -0.7 -1.2 hypothetical protein compare
MPMX19_05119 -0.7 -5.5 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_03788 -0.7 -3.3 hypothetical protein compare
MPMX19_01113 -0.7 -1.6 Adaptive-response sensory-kinase SasA compare
MPMX19_06716 -0.7 -4.1 hypothetical protein compare
MPMX19_03976 -0.7 -2.4 hypothetical protein compare
MPMX19_06577 -0.7 -4.8 hypothetical protein compare
MPMX19_01400 -0.7 -1.6 hypothetical protein compare
MPMX19_04200 -0.7 -3.9 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_05023 -0.7 -1.1 hypothetical protein compare
MPMX19_02607 -0.7 -2.3 hypothetical protein compare
MPMX19_05965 -0.7 -2.7 Glycerol-3-phosphate regulon repressor compare
MPMX19_06800 -0.7 -2.7 Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase compare
MPMX19_01486 -0.7 -3.6 Flagellar L-ring protein compare
MPMX19_01249 -0.7 -1.2 Periplasmic serine endoprotease DegP compare
MPMX19_03165 -0.7 -1.6 hypothetical protein compare
MPMX19_00050 -0.7 -2.5 Pyridoxal phosphate homeostasis protein compare
MPMX19_02905 -0.7 -1.1 hypothetical protein compare
MPMX19_06544 -0.7 -5.4 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_05203 -0.7 -1.7 hypothetical protein compare
MPMX19_03959 -0.7 -1.4 hypothetical protein compare
MPMX19_05044 -0.7 -1.4 hypothetical protein compare
MPMX19_01870 -0.7 -2.4 hypothetical protein compare
MPMX19_03739 -0.7 -2.2 hypothetical protein compare
MPMX19_01323 -0.7 -2.2 hypothetical protein compare
MPMX19_00205 -0.7 -2.9 hypothetical protein compare
MPMX19_06723 -0.7 -2.2 hypothetical protein compare
MPMX19_00846 -0.7 -1.5 hypothetical protein compare
MPMX19_03635 -0.7 -0.8 DNA-binding transcriptional activator DecR compare
MPMX19_03688 -0.7 -2.3 Response regulator UvrY compare
MPMX19_04326 -0.7 -2.3 Beta-hexosaminidase compare
MPMX19_02379 -0.7 -2.8 hypothetical protein compare
MPMX19_06921 -0.7 -2.5 hypothetical protein compare
MPMX19_00181 -0.7 -2.2 hypothetical protein compare
MPMX19_05210 -0.7 -3.3 Delta(1)-pyrroline-2-carboxylate reductase 1 compare
MPMX19_00572 -0.7 -2.2 Type-4 uracil-DNA glycosylase compare
MPMX19_06306 -0.7 -1.9 hypothetical protein compare
MPMX19_02388 -0.7 -2.5 hypothetical protein compare
MPMX19_05624 -0.7 -1.2 hypothetical protein compare
MPMX19_06337 -0.7 -1.6 Arsenic resistance transcriptional regulator ArsR1 compare
MPMX19_04354 -0.6 -1.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_03335 -0.6 -1.5 hypothetical protein compare
MPMX19_05453 -0.6 -2.0 hypothetical protein compare
MPMX19_06985 -0.6 -1.3 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_05921 -0.6 -0.9 hypothetical protein compare
MPMX19_00748 -0.6 -2.1 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_03608 -0.6 -2.1 N-acetylmuramic acid 6-phosphate etherase compare
MPMX19_03609 -0.6 -1.7 HTH-type transcriptional repressor NagR compare
MPMX19_02132 -0.6 -2.2 hypothetical protein compare
MPMX19_04058 -0.6 -1.7 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_00912 -0.6 -4.4 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
MPMX19_00236 -0.6 -1.8 HTH-type transcriptional regulator IscR compare
MPMX19_00240 -0.6 -1.3 hypothetical protein compare
MPMX19_01111 -0.6 -1.5 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_05295 -0.6 -1.6 hypothetical protein compare
MPMX19_04210 -0.6 -1.2 hypothetical protein compare
MPMX19_06123 -0.6 -1.2 hypothetical protein compare
MPMX19_02618 -0.6 -1.1 Transcriptional regulatory protein BaeR compare
MPMX19_04204 -0.6 -3.7 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_04199 -0.6 -3.6 Pseudaminic acid synthase compare
MPMX19_06914 -0.6 -1.2 Acyl-CoA dehydrogenase FadE27 compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms