Experiment set1S470 for Escherichia coli ECOR38

Compare to:

Phi92

Group: phage
Media: LB_plus_SM_buffer + MOI 10
Culturing: Ecoli_ECOR38_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 11/24/2024
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 18 genes in this experiment

For phage MOI 10 in Escherichia coli ECOR38

For phage MOI 10 across organisms

SEED Subsystems

Subsystem #Specific
Capsular heptose biosynthesis 1
DNA repair, bacterial MutL-MutS system 1
Deoxyribose and Deoxynucleoside Catabolism 1
Hexose Phosphate Uptake System 1
LOS core oligosaccharide biosynthesis 1
Lipid A modifications 1
Ribosome biogenesis bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
S-methyl-5'-thioadenosine degradation II 1 1 1
adenine and adenosine salvage III 4 4 3
purine ribonucleosides degradation 6 6 4
adenine and adenosine salvage V 3 3 2
adenine and adenosine salvage I 2 2 1
pseudouridine degradation 2 2 1
adenosine nucleotides degradation II 5 5 2
2-deoxy-α-D-ribose 1-phosphate degradation 3 3 1
GDP-D-glycero-α-D-manno-heptose biosynthesis 4 1 1
ADP-L-glycero-β-D-manno-heptose biosynthesis 5 5 1
purine nucleotides degradation II (aerobic) 11 11 2
superpathway of pyrimidine deoxyribonucleosides degradation 6 6 1
superpathway of purine deoxyribonucleosides degradation 7 7 1
peptidoglycan recycling II 10 7 1
nucleoside and nucleotide degradation (archaea) 10 4 1
L-methionine salvage cycle III 11 5 1
peptidoglycan recycling I 14 14 1
superpathway of purine nucleotide salvage 14 13 1