Experiment set1S47 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.3 -17.0 Pca regulon regulatory protein compare
MPMX19_04112 -3.3 -7.5 hypothetical protein compare
MPMX19_00530 -2.8 -4.9 Orotate phosphoribosyltransferase compare
MPMX19_01054 -2.7 -6.9 Aspartate carbamoyltransferase compare
MPMX19_06547 -2.7 -8.8 hypothetical protein compare
MPMX19_05680 -2.6 -5.1 Cell cycle response regulator CtrA compare
MPMX19_04000 -2.3 -5.5 Flagellar motor switch protein FliG compare
MPMX19_00705 -2.2 -3.4 Cell division coordinator CpoB compare
MPMX19_04114 -2.1 -5.7 hypothetical protein compare
MPMX19_02303 -2.1 -3.4 hypothetical protein compare
MPMX19_01053 -2.1 -4.6 Dihydroorotase compare
MPMX19_00858 -2.0 -6.1 Flagellar biosynthetic protein FliP compare
MPMX19_00126 -2.0 -3.9 hypothetical protein compare
MPMX19_00862 -1.9 -9.7 hypothetical protein compare
MPMX19_01484 -1.9 -8.1 Flagellar basal-body rod protein FlgG compare
MPMX19_02657 -1.9 -15.5 Glutamate synthase [NADPH] large chain compare
MPMX19_02267 -1.9 -1.8 hypothetical protein compare
MPMX19_04087 -1.9 -4.3 Flagellum site-determining protein YlxH compare
MPMX19_02658 -1.9 -12.0 Glutamate synthase [NADPH] small chain compare
MPMX19_04208 -1.8 -4.6 flagellum biosynthesis repressor protein FlbT compare
MPMX19_06967 -1.8 -2.5 hypothetical protein compare
MPMX19_02981 -1.8 -6.3 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_05678 -1.7 -6.9 hypothetical protein compare
MPMX19_00864 -1.7 -5.1 Flagellar hook-basal body complex protein FliE compare
MPMX19_04094 -1.7 -9.9 Flagellar M-ring protein compare
MPMX19_00866 -1.7 -7.3 Flagellar biosynthetic protein FliR compare
MPMX19_02268 -1.7 -3.8 hypothetical protein compare
MPMX19_00128 -1.7 -10.6 hypothetical protein compare
MPMX19_05679 -1.7 -9.4 Flagellum-specific ATP synthase compare
MPMX19_00867 -1.6 -11.6 Flagellar biosynthetic protein FlhB compare
MPMX19_02207 -1.6 -3.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_01495 -1.6 -3.0 hypothetical protein compare
MPMX19_00863 -1.6 -8.1 Flagellar basal-body rod protein FlgC compare
MPMX19_00608 -1.6 -1.5 hypothetical protein compare
MPMX19_00838 -1.6 -3.3 GTP pyrophosphokinase rsh compare
MPMX19_01483 -1.6 -10.2 Flagellar basal-body rod protein FlgG compare
MPMX19_02511 -1.6 -2.7 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_04963 -1.5 -2.1 Cysteine desulfurase IscS compare
MPMX19_05313 -1.5 -2.9 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_04093 -1.5 -3.4 hypothetical protein compare
MPMX19_03389 -1.5 -3.6 Carbon monoxide dehydrogenase small chain compare
MPMX19_04092 -1.5 -5.7 Flagellar motor switch protein FliN compare
MPMX19_00714 -1.5 -6.0 Ferrous-iron efflux pump FieF compare
MPMX19_01585 -1.5 -3.5 Zinc uptake regulation protein compare
MPMX19_04954 -1.4 -3.1 Putative hydro-lyase compare
MPMX19_02084 -1.4 -1.5 hypothetical protein compare
MPMX19_02674 -1.4 -2.2 NADH:quinone reductase compare
MPMX19_01497 -1.3 -3.6 hypothetical protein compare
MPMX19_04222 -1.3 -9.7 hypothetical protein compare
MPMX19_01714 -1.3 -1.8 tRNA-modifying protein YgfZ compare
MPMX19_05445 -1.3 -2.8 tRNA-Glu compare
MPMX19_01560 -1.2 -3.2 3'-5' exonuclease DinG compare
MPMX19_05727 -1.2 -5.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_03450 -1.2 -1.9 hypothetical protein compare
MPMX19_00311 -1.2 -10.1 hypothetical protein compare
MPMX19_03499 -1.2 -2.9 Formate dehydrogenase, cytochrome b556(fdo) subunit compare
MPMX19_04089 -1.2 -8.8 Flagellar biosynthesis protein FlhA compare
MPMX19_00766 -1.2 -2.5 hypothetical protein compare
MPMX19_00906 -1.2 -8.0 Amidophosphoribosyltransferase compare
MPMX19_06004 -1.2 -2.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01565 -1.2 -2.3 hypothetical protein compare
MPMX19_02404 -1.1 -3.3 LexA repressor compare
MPMX19_00748 -1.1 -3.2 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_00131 -1.1 -2.0 hypothetical protein compare
MPMX19_02675 -1.1 -8.4 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_03859 -1.1 -2.2 hypothetical protein compare
MPMX19_00689 -1.1 -2.2 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_01304 -1.1 -6.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_01796 -1.1 -1.9 hypothetical protein compare
MPMX19_00854 -1.1 -9.3 hypothetical protein compare
MPMX19_01883 -1.1 -5.1 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_00887 -1.0 -1.5 hypothetical protein compare
MPMX19_05725 -1.0 -1.9 hypothetical protein compare
MPMX19_01084 -1.0 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_01015 -1.0 -4.0 Anthranilate phosphoribosyltransferase compare
MPMX19_04199 -1.0 -5.9 Pseudaminic acid synthase compare
MPMX19_03976 -1.0 -2.8 hypothetical protein compare
MPMX19_05505 -1.0 -2.2 Leucine-responsive regulatory protein compare
MPMX19_01645 -1.0 -2.2 HTH-type transcriptional regulator GltC compare
MPMX19_00260 -1.0 -2.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_06644 -1.0 -8.3 GDP-mannose 4,6-dehydratase compare
MPMX19_04622 -1.0 -6.1 hypothetical protein compare
MPMX19_01652 -1.0 -2.9 hypothetical protein compare
MPMX19_04200 -1.0 -4.8 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_04869 -1.0 -3.7 DNA polymerase I compare
MPMX19_04205 -1.0 -3.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06577 -1.0 -6.8 hypothetical protein compare
MPMX19_01777 -1.0 -2.2 2-aminoadipate transaminase compare
MPMX19_06734 -1.0 -8.3 Alginate biosynthesis protein AlgA compare
MPMX19_05997 -1.0 -2.3 hypothetical protein compare
MPMX19_02553 -0.9 -4.1 Protein-export protein SecB compare
MPMX19_06819 -0.9 -2.1 hypothetical protein compare
MPMX19_05144 -0.9 -2.1 hypothetical protein compare
MPMX19_00655 -0.9 -3.0 hypothetical protein compare
MPMX19_00304 -0.9 -2.4 Phosphatidylcholine synthase compare
MPMX19_05217 -0.9 -1.7 Flagellin compare
MPMX19_04948 -0.9 -1.6 HTH-type transcriptional regulator GltR compare
MPMX19_01426 -0.9 -1.3 hypothetical protein compare
MPMX19_06009 -0.9 -2.4 hypothetical protein compare
MPMX19_03072 -0.9 -1.1 hypothetical protein compare
MPMX19_05438 -0.9 -1.9 hypothetical protein compare
MPMX19_02736 -0.9 -5.7 Tryptophan synthase beta chain compare
MPMX19_03096 -0.9 -1.9 hypothetical protein compare
MPMX19_06272 -0.9 -1.0 hypothetical protein compare
MPMX19_00976 -0.9 -1.6 ATP-dependent RNA helicase RhlE compare
MPMX19_01067 -0.9 -1.3 hypothetical protein compare
MPMX19_01613 -0.9 -2.5 hypothetical protein compare
MPMX19_03425 -0.9 -1.8 hypothetical protein compare
MPMX19_01249 -0.9 -1.4 Periplasmic serine endoprotease DegP compare
MPMX19_04171 -0.9 -1.6 16S ribosomal RNA compare
MPMX19_03276 -0.8 -2.3 hypothetical protein compare
MPMX19_01400 -0.8 -2.1 hypothetical protein compare
MPMX19_05719 -0.8 -1.6 hypothetical protein compare
MPMX19_02579 -0.8 -1.7 hypothetical protein compare
MPMX19_01870 -0.8 -3.1 hypothetical protein compare
MPMX19_06926 -0.8 -2.1 hypothetical protein compare
MPMX19_06419 -0.8 -1.5 IS110 family transposase ISHne3 compare
MPMX19_00129 -0.8 -1.3 hypothetical protein compare
MPMX19_00132 -0.8 -3.1 hypothetical protein compare
MPMX19_05387 -0.8 -2.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_01884 -0.8 -2.2 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_04326 -0.8 -2.2 Beta-hexosaminidase compare
MPMX19_02664 -0.8 -1.2 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_04461 -0.8 -3.1 HTH-type transcriptional repressor RspR compare
MPMX19_01423 -0.8 -2.2 hypothetical protein compare
MPMX19_05901 -0.8 -2.3 Motility protein B compare
MPMX19_01277 -0.8 -3.9 hypothetical protein compare
MPMX19_01014 -0.8 -3.0 Indole-3-glycerol phosphate synthase compare
MPMX19_05119 -0.8 -6.0 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_04206 -0.8 -3.0 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_00149 -0.8 -3.5 hypothetical protein compare
MPMX19_03975 -0.8 -2.7 Putative thiosulfate sulfurtransferase compare
MPMX19_02202 -0.8 -1.9 hypothetical protein compare
MPMX19_04701 -0.8 -2.0 Transcriptional regulatory protein FixJ compare
MPMX19_01748 -0.8 -1.9 hypothetical protein compare
MPMX19_00696 -0.8 -3.5 Crossover junction endodeoxyribonuclease RuvC compare
MPMX19_05433 -0.8 -3.2 hypothetical protein compare
MPMX19_05100 -0.8 -2.4 hypothetical protein compare
MPMX19_05282 -0.8 -1.8 1,3,6,8-tetrahydroxynaphthalene synthase compare
MPMX19_01485 -0.8 -4.8 hypothetical protein compare
MPMX19_01918 -0.8 -1.0 tRNA-Ala compare
MPMX19_02397 -0.8 -2.3 hypothetical protein compare
MPMX19_06545 -0.7 -6.5 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_05451 -0.7 -3.4 hypothetical protein compare
MPMX19_00718 -0.7 -1.7 hypothetical protein compare
MPMX19_00061 -0.7 -2.0 L-lysine 2,3-aminomutase compare
MPMX19_06544 -0.7 -5.9 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_01085 -0.7 -3.2 hypothetical protein compare
MPMX19_06821 -0.7 -2.2 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_05271 -0.7 -0.9 hypothetical protein compare
MPMX19_05714 -0.7 -4.6 hypothetical protein compare
MPMX19_06700 -0.7 -1.6 Copper-sensing transcriptional repressor RicR compare
MPMX19_00511 -0.7 -2.5 hypothetical protein compare
MPMX19_01314 -0.7 -3.6 hypothetical protein compare
MPMX19_01111 -0.7 -1.4 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_05690 -0.7 -3.8 Protein phosphotransferase ChpT compare
MPMX19_01822 -0.7 -3.6 2-isopropylmalate synthase compare
MPMX19_04623 -0.7 -2.8 hypothetical protein compare
MPMX19_05044 -0.7 -1.2 hypothetical protein compare
MPMX19_01708 -0.7 -1.8 hypothetical protein compare
MPMX19_06892 -0.7 -1.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06306 -0.7 -2.5 hypothetical protein compare
MPMX19_05624 -0.7 -1.2 hypothetical protein compare
MPMX19_00186 -0.7 -1.2 hypothetical protein compare
MPMX19_06271 -0.7 -4.9 hypothetical protein compare
MPMX19_05796 -0.7 -2.8 HTH-type transcriptional repressor BdcR compare
MPMX19_03782 -0.7 -2.6 hypothetical protein compare
MPMX19_06084 -0.7 -2.2 Transcriptional regulatory protein LnrK compare
MPMX19_03081 -0.7 -2.1 Protein FecR compare
MPMX19_01630 -0.7 -2.4 Phosphoribosylamine--glycine ligase compare
MPMX19_01076 -0.7 -1.4 Molybdopterin synthase catalytic subunit compare
MPMX19_03421 -0.7 -1.7 hypothetical protein compare
MPMX19_06014 -0.7 -3.7 Histidinol-phosphate aminotransferase compare
MPMX19_04835 -0.7 -1.1 hypothetical protein compare
MPMX19_01494 -0.7 -3.6 Flagellar P-ring protein compare
MPMX19_02136 -0.7 -0.8 Phage shock protein A compare
MPMX19_03822 -0.7 -1.1 Sulfur carrier protein FdhD compare
MPMX19_06353 -0.7 -0.9 hypothetical protein compare
MPMX19_05442 -0.7 -1.6 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_06227 -0.7 -2.8 L-arabinose 1-dehydrogenase (NAD(P)(+)) compare
MPMX19_03127 -0.7 -2.0 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_03871 -0.6 -1.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04042 -0.6 -1.9 hypothetical protein compare
MPMX19_00904 -0.6 -3.9 DNA repair protein RadA compare
MPMX19_06315 -0.6 -1.4 ISL3 family transposase ISAli18 compare
MPMX19_04457 -0.6 -2.2 Pyruvate, phosphate dikinase compare
MPMX19_03427 -0.6 -1.9 hypothetical protein compare
MPMX19_01819 -0.6 -2.4 Holin-like protein CidA compare
MPMX19_04430 -0.6 -1.8 hypothetical protein compare
MPMX19_04218 -0.6 -3.0 Protein phosphatase PrpC compare
MPMX19_06327 -0.6 -1.0 hypothetical protein compare
MPMX19_03193 -0.6 -2.3 hypothetical protein compare
MPMX19_01486 -0.6 -3.6 Flagellar L-ring protein compare
MPMX19_05454 -0.6 -1.6 hypothetical protein compare
MPMX19_05193 -0.6 -1.0 Taurine-binding periplasmic protein compare
MPMX19_04949 -0.6 -2.2 Leu/Ile/Val-binding protein compare
MPMX19_04149 -0.6 -1.2 hypothetical protein compare
MPMX19_05272 -0.6 -1.9 hypothetical protein compare
MPMX19_05982 -0.6 -1.8 hypothetical protein compare
MPMX19_02668 -0.6 -4.0 RNA polymerase sigma-54 factor 2 compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms