Experiment set1S47 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_02514 +0.9 2.0 hypothetical protein compare
MPMX19_03655 +0.9 2.3 hypothetical protein compare
MPMX19_06197 +0.8 1.9 hypothetical protein compare
MPMX19_02092 +0.8 3.3 hypothetical protein compare
MPMX19_02031 +0.8 2.2 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_06179 +0.7 2.0 putative SURF1-like protein compare
MPMX19_06874 +0.7 2.4 hypothetical protein compare
MPMX19_00020 +0.7 0.8 hypothetical protein compare
MPMX19_04913 +0.6 1.5 hypothetical protein compare
MPMX19_06526 +0.6 2.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05043 +0.6 2.9 hypothetical protein compare
MPMX19_06506 +0.6 1.6 hypothetical protein compare
MPMX19_00687 +0.6 1.7 hypothetical protein compare
MPMX19_00212 +0.6 5.1 Nitrogen fixation regulation protein FixK compare
MPMX19_06355 +0.6 2.5 hypothetical protein compare
MPMX19_06989 +0.6 1.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04738 +0.6 1.7 hypothetical protein compare
MPMX19_01834 +0.6 1.9 hypothetical protein compare
MPMX19_06399 +0.6 1.9 hypothetical protein compare
MPMX19_05762 +0.6 1.5 hypothetical protein compare
MPMX19_03462 +0.6 2.1 Acetate CoA-transferase subunit alpha compare
MPMX19_05181 +0.6 1.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03631 +0.6 1.3 hypothetical protein compare
MPMX19_04393 +0.6 1.5 hypothetical protein compare
MPMX19_01597 +0.5 1.6 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_03800 +0.5 1.4 hypothetical protein compare
MPMX19_02787 +0.5 2.0 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_00170 +0.5 1.9 hypothetical protein compare
MPMX19_00839 +0.5 1.4 hypothetical protein compare
MPMX19_06888 +0.5 2.1 hypothetical protein compare
MPMX19_06765 +0.5 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_05139 +0.5 2.1 CRISPR-associated endoribonuclease Cas2 compare
MPMX19_01947 +0.5 2.0 Chemotaxis protein CheY compare
MPMX19_03509 +0.5 1.3 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic compare
MPMX19_05011 +0.5 2.5 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_00234 +0.5 1.4 hypothetical protein compare
MPMX19_01559 +0.5 2.2 hypothetical protein compare
MPMX19_06096 +0.5 3.3 hypothetical protein compare
MPMX19_05068 +0.5 1.8 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_02149 +0.5 1.7 hypothetical protein compare
MPMX19_04825 +0.5 1.4 hypothetical protein compare
MPMX19_05575 +0.5 1.5 hypothetical protein compare
MPMX19_02105 +0.5 1.8 hypothetical protein compare
MPMX19_04633 +0.5 2.1 hypothetical protein compare
MPMX19_03268 +0.5 2.0 HTH-type transcriptional regulator DegA compare
MPMX19_05623 +0.5 1.9 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_01596 +0.5 2.1 hypothetical protein compare
MPMX19_02613 +0.5 1.5 hypothetical protein compare
MPMX19_06492 +0.5 1.9 IS5 family transposase ISAzs10 compare
MPMX19_02254 +0.5 1.8 hypothetical protein compare
MPMX19_03039 +0.5 1.5 Cyclic AMP receptor protein compare
MPMX19_05934 +0.5 2.1 Arylesterase compare
MPMX19_02909 +0.5 2.0 Cytochrome c oxidase subunit 3 compare
MPMX19_03195 +0.4 0.9 hypothetical protein compare
MPMX19_02874 +0.4 1.7 HTH-type transcriptional regulator SutR compare
MPMX19_02816 +0.4 1.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02378 +0.4 1.3 hypothetical protein compare
MPMX19_00664 +0.4 1.7 hypothetical protein compare
MPMX19_06385 +0.4 1.6 hypothetical protein compare
MPMX19_06395 +0.4 1.6 Inner membrane protein YqaA compare
MPMX19_01005 +0.4 1.8 hypothetical protein compare
MPMX19_00167 +0.4 1.2 hypothetical protein compare
MPMX19_03710 +0.4 2.1 Glycine cleavage system transcriptional activator compare
MPMX19_05923 +0.4 3.2 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_06897 +0.4 1.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01059 +0.4 0.6 hypothetical protein compare
MPMX19_04700 +0.4 1.7 Adaptive-response sensory-kinase SasA compare
MPMX19_01964 +0.4 1.3 hypothetical protein compare
MPMX19_04759 +0.4 1.3 HTH-type transcriptional regulator LutR compare
MPMX19_05014 +0.4 1.2 Cytochrome c1 compare
MPMX19_04688 +0.4 1.6 Bicarbonate transport ATP-binding protein CmpD compare
MPMX19_05622 +0.4 3.3 Sensor histidine kinase RegB compare
MPMX19_00822 +0.4 2.5 Divalent metal cation transporter MntH compare
MPMX19_01125 +0.4 0.7 hypothetical protein compare
MPMX19_03868 +0.4 1.9 Xylitol-binding protein compare
MPMX19_02858 +0.4 1.7 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
MPMX19_05210 +0.4 2.5 Delta(1)-pyrroline-2-carboxylate reductase 1 compare
MPMX19_02181 +0.4 1.5 hypothetical protein compare
MPMX19_01491 +0.4 1.1 hypothetical protein compare
MPMX19_05656 +0.4 1.2 HTH-type transcriptional activator RhaR compare
MPMX19_00544 +0.4 0.8 hypothetical protein compare
MPMX19_02733 +0.4 2.5 Regulatory protein LuxO compare
MPMX19_04673 +0.4 1.1 Purine ribonucleoside efflux pump NepI compare
MPMX19_06520 +0.4 0.7 Nitrate import ATP-binding protein NrtC compare
MPMX19_01978 +0.4 0.8 hypothetical protein compare
MPMX19_01415 +0.4 1.0 hypothetical protein compare
MPMX19_05013 +0.4 2.0 Cytochrome b compare
MPMX19_02646 +0.4 1.4 hypothetical protein compare
MPMX19_04299 +0.4 2.4 hypothetical protein compare
MPMX19_00210 +0.4 2.1 hypothetical protein compare
MPMX19_00025 +0.4 1.0 hypothetical protein compare
MPMX19_00918 +0.4 2.2 hypothetical protein compare
MPMX19_06515 +0.4 1.6 hypothetical protein compare
MPMX19_03972 +0.4 1.6 Enolase compare
MPMX19_01875 +0.4 1.3 hypothetical protein compare
MPMX19_06815 +0.4 1.1 hypothetical protein compare
MPMX19_00046 +0.4 1.2 hypothetical protein compare
MPMX19_01508 +0.4 1.2 hypothetical protein compare
MPMX19_03005 +0.4 1.2 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
MPMX19_06853 +0.4 1.3 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_00879 +0.4 1.9 hypothetical protein compare
MPMX19_04799 +0.4 2.0 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_04158 +0.4 2.3 hypothetical protein compare
MPMX19_05205 +0.4 1.6 hypothetical protein compare
MPMX19_00206 +0.4 2.8 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_00716 +0.4 2.4 Hydrogenase maturation factor HypD compare
MPMX19_06221 +0.4 2.0 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_06975 +0.4 2.0 HTH-type transcriptional regulator HdfR compare
MPMX19_00978 +0.4 1.2 hypothetical protein compare
MPMX19_05186 +0.4 2.2 Thiosulfate sulfurtransferase GlpE compare
MPMX19_03963 +0.4 2.1 hypothetical protein compare
MPMX19_05017 +0.4 2.0 hypothetical protein compare
MPMX19_04968 +0.4 0.7 hypothetical protein compare
MPMX19_03608 +0.4 1.9 N-acetylmuramic acid 6-phosphate etherase compare
MPMX19_03100 +0.4 1.6 hypothetical protein compare
MPMX19_05038 +0.4 1.5 ATP synthase epsilon chain compare
MPMX19_00957 +0.4 1.5 Phosphoribosyl-ATP pyrophosphatase compare
MPMX19_02313 +0.4 2.5 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX19_03618 +0.4 2.1 hypothetical protein compare
MPMX19_03897 +0.4 1.1 hypothetical protein compare
MPMX19_06569 +0.4 1.0 hypothetical protein compare
MPMX19_02309 +0.4 2.1 hypothetical protein compare
MPMX19_05511 +0.4 1.4 hypothetical protein compare
MPMX19_04243 +0.4 1.3 2,3-dehydroadipyl-CoA hydratase compare
MPMX19_01617 +0.4 0.7 hypothetical protein compare
MPMX19_01373 +0.4 2.0 hypothetical protein compare
MPMX19_02069 +0.4 1.6 hypothetical protein compare
MPMX19_03123 +0.4 0.8 Citrate lyase acyl carrier protein compare
MPMX19_06954 +0.4 1.3 hypothetical protein compare
MPMX19_00665 +0.4 1.0 hypothetical protein compare
MPMX19_01454 +0.4 0.8 hypothetical protein compare
MPMX19_04598 +0.4 2.4 putative ABC transporter ATP-binding protein YadG compare
MPMX19_03819 +0.4 1.6 NADP-reducing hydrogenase subunit HndA compare
MPMX19_03287 +0.4 1.9 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_05876 +0.3 2.0 2-ketogluconate reductase compare
MPMX19_05534 +0.3 1.0 DNA gyrase inhibitor YacG compare
MPMX19_02633 +0.3 1.8 Chaperone protein DnaJ compare
MPMX19_04699 +0.3 1.4 hypothetical protein compare
MPMX19_03883 +0.3 1.6 hypothetical protein compare
MPMX19_06006 +0.3 1.3 hypothetical protein compare
MPMX19_05095 +0.3 1.3 Toxin YoeB compare
MPMX19_04636 +0.3 1.0 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00821 +0.3 1.3 Protein SlyX compare
MPMX19_03862 +0.3 1.2 hypothetical protein compare
MPMX19_02843 +0.3 2.4 hypothetical protein compare
MPMX19_04477 +0.3 1.0 hypothetical protein compare
MPMX19_00035 +0.3 2.1 hypothetical protein compare
MPMX19_06522 +0.3 1.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06223 +0.3 1.3 HTH-type transcriptional regulator GbpR compare
MPMX19_00266 +0.3 1.0 hypothetical protein compare
MPMX19_05702 +0.3 1.9 Ethanolamine ammonia-lyase light chain compare
MPMX19_01717 +0.3 1.5 Pyrophosphatase PpaX compare
MPMX19_04549 +0.3 1.5 L-cystine-binding protein FliY compare
MPMX19_05961 +0.3 1.9 hypothetical protein compare
MPMX19_05060 +0.3 1.9 hypothetical protein compare
MPMX19_04644 +0.3 0.9 hypothetical protein compare
MPMX19_06456 +0.3 0.8 hypothetical protein compare
MPMX19_01789 +0.3 1.2 Urease subunit beta compare
MPMX19_06534 +0.3 1.4 Putative amino-acid ABC transporter-binding protein YhdW compare
MPMX19_03111 +0.3 2.1 Putative fatty-acid--CoA ligase FadD21 compare
MPMX19_04066 +0.3 2.3 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MPMX19_04707 +0.3 1.4 hypothetical protein compare
MPMX19_02850 +0.3 1.1 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_01609 +0.3 1.0 hypothetical protein compare
MPMX19_02251 +0.3 0.5 hypothetical protein compare
MPMX19_01202 +0.3 1.5 Ribosomal RNA large subunit methyltransferase J compare
MPMX19_02524 +0.3 2.5 tRNA pseudouridine synthase B compare
MPMX19_01701 +0.3 2.5 hypothetical protein compare
MPMX19_06414 +0.3 1.5 hypothetical protein compare
MPMX19_00791 +0.3 2.1 hypothetical protein compare
MPMX19_06907 +0.3 1.3 L-talarate/galactarate dehydratase compare
MPMX19_03350 +0.3 1.9 GTP 3',8-cyclase compare
MPMX19_04067 +0.3 2.1 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_04771 +0.3 2.1 Sialic acid TRAP transporter permease protein SiaT compare
MPMX19_03915 +0.3 1.1 hypothetical protein compare
MPMX19_05195 +0.3 1.4 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_00825 +0.3 1.8 hypothetical protein compare
MPMX19_05578 +0.3 2.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01841 +0.3 1.5 hypothetical protein compare
MPMX19_03582 +0.3 1.6 Response regulator protein TmoT compare
MPMX19_02815 +0.3 1.0 2-keto-4-pentenoate hydratase compare
MPMX19_06193 +0.3 0.8 Flagellar hook-basal body complex protein FliE compare
MPMX19_04257 +0.3 2.0 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase compare
MPMX19_04783 +0.3 1.9 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
MPMX19_01394 +0.3 0.5 hypothetical protein compare
MPMX19_03900 +0.3 1.3 Hca operon transcriptional activator HcaR compare
MPMX19_02287 +0.3 1.8 hypothetical protein compare
MPMX19_05324 +0.3 2.3 hypothetical protein compare
MPMX19_05229 +0.3 1.7 ECF RNA polymerase sigma factor RpoE compare
MPMX19_02295 +0.3 1.6 Periplasmic nitrate reductase, electron transfer subunit compare
MPMX19_06737 +0.3 1.4 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_00615 +0.3 1.2 hypothetical protein compare
MPMX19_06924 +0.3 1.2 hypothetical protein compare
MPMX19_00764 +0.3 0.8 ECF RNA polymerase sigma factor EcfG compare
MPMX19_05183 +0.3 2.2 Putative aliphatic sulfonates-binding protein compare
MPMX19_06192 +0.3 2.1 hypothetical protein compare
MPMX19_03132 +0.3 2.2 3-keto-5-aminohexanoate cleavage enzyme compare
MPMX19_02057 +0.3 0.9 hypothetical protein compare
MPMX19_04731 +0.3 1.2 hypothetical protein compare
MPMX19_00970 +0.3 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms