Experiment set1S469 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

200 most important genes:

  gene name fitness t score description  
GFF944 -4.2 -2.9 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3890 -3.9 -2.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3889 -3.7 -2.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF6512 -3.6 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF3265 -3.5 -3.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF5267 -3.4 -3.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF5158 -3.3 -5.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF2515 -3.3 -3.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF968 -3.3 -2.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF966 -3.2 -8.0 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF5325 -3.2 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2329 -3.1 -3.0 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF255 -3.1 -3.6 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF3160 -3.0 -3.3 Transcriptional regulator YeiE, LysR family compare
GFF5512 -3.0 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5324 -2.9 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF239 -2.9 -2.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF3888 -2.9 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF339 -2.8 -4.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF5896 -2.8 -9.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF6022 -2.8 -9.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF5307 -2.7 -5.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF6692 -2.6 -2.5 no description compare
GFF5261 -2.6 -9.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF5118 -2.6 -4.3 gluconolactonase family protein compare
GFF5513 -2.6 -3.0 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF2627 -2.5 -5.3 Chorismate synthase (EC 4.2.3.5) compare
GFF967 -2.5 -15.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF6182 -2.4 -4.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF1106 -2.4 -3.2 UvrD/REP helicase compare
GFF302 -2.4 -2.2 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF4145 -2.3 -1.4 transcriptional regulators-like protein compare
GFF3089 -2.3 -3.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF6513 -2.3 -5.8 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF6042 -2.2 -4.2 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF5065 -2.2 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF5279 -2.2 -5.0 Fructokinase (EC 2.7.1.4) compare
GFF168 -2.1 -7.9 MCP methyltransferase, CheR-type compare
GFF3838 -2.1 -13.4 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF1105 -2.0 -3.5 Helicase compare
GFF7018 -2.0 -2.7 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF5509 -2.0 -3.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5666 -2.0 -4.3 Prevent host death protein, Phd antitoxin compare
GFF4033 -2.0 -2.7 no description compare
GFF1324 -1.9 -3.2 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF7264 -1.9 -2.2 Gluconolactonase (EC 3.1.1.17) compare
GFF3600 -1.8 -2.7 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF5603 -1.8 -10.8 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF6876 -1.8 -11.6 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF3941 -1.8 -2.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF7295 -1.8 -5.8 HPr kinase/phosphorylase compare
GFF5057 -1.7 -13.7 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF2719 -1.7 -3.1 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF3377 -1.7 -1.0 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF5604 -1.7 -8.9 D-xylose ABC transporter, permease protein XylH compare
GFF575 -1.6 -8.2 Tol-Pal system protein TolQ compare
GFF3264 -1.6 -4.7 Methionine biosynthesis protein MetW compare
GFF489 -1.6 -4.1 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF1756 -1.6 -1.7 hypothetical protein compare
GFF372 -1.6 -5.6 PMID: 11481431 compare
GFF577 -1.6 -2.0 TolA protein compare
GFF6959 -1.6 -0.8 Putative analog of CcoH, COG3198 compare
GFF576 -1.5 -4.2 Tol biopolymer transport system, TolR protein compare
GFF3651 -1.5 -1.6 PTS system, IIA component compare
GFF2578 -1.5 -7.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF3928 -1.5 -2.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF6378 -1.5 -1.1 Nicotinamidase (EC 3.5.1.19) compare
GFF6385 -1.5 -2.5 Mll4878 protein compare
GFF7248 -1.4 -1.5 no description compare
GFF6249 -1.4 -6.0 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF2819 -1.4 -3.5 Phosphoenolpyruvate synthase regulatory protein compare
GFF6184 -1.4 -2.6 hypothetical protein compare
GFF292 -1.3 -9.6 Tol-Pal system beta propeller repeat protein TolB compare
GFF5491 -1.3 -4.6 Peptide deformylase (EC 3.5.1.88) compare
GFF143 -1.3 -1.8 Dethiobiotin synthase BioD (EC 6.3.3.3) compare
GFF6591 -1.3 -4.9 Transcriptional regulator, GntR family compare
GFF2847 -1.3 -1.9 histone-like nucleoid-structuring protein H-NS compare
GFF3510 -1.3 -1.2 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF408 -1.3 -1.5 Two-component system response regulator OmpR compare
GFF3254 -1.3 -9.5 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF5076 -1.3 -8.3 hypothetical protein compare
GFF1478 -1.3 -1.7 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
GFF4482 -1.3 -2.4 Transcriptional regulator MraZ compare
GFF291 -1.3 -5.8 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF4107 -1.3 -1.7 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF2911 -1.3 -3.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
GFF2300 -1.3 -7.5 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF409 -1.3 -4.5 Osmolarity sensory histidine kinase EnvZ compare
GFF4626 -1.3 -4.2 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF5605 -1.2 -3.8 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF6250 -1.2 -8.0 Glutamate--cysteine ligase-like protein YbdK compare
GFF6878 -1.2 -8.2 hypothetical protein compare
GFF1908 -1.2 -1.3 Short-chain dehydrogenases of various substrate specificities compare
GFF1573 -1.2 -1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF219 -1.2 -2.7 GTP-binding protein TypA/BipA compare
GFF5156 -1.2 -9.7 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF431 -1.2 -2.6 Esterase/lipase compare
GFF3609 -1.2 -3.0 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF602 -1.2 -1.4 Transcriptional regulator, LysR family => TcuR compare
GFF3485 -1.1 -1.7 Ferredoxin, 2Fe-2S compare
GFF3584 -1.1 -1.4 hypothetical protein compare
GFF6174 -1.1 -1.3 Fluoride ion transporter CrcB compare
GFF1475 -1.1 -1.3 no description compare
GFF6121 -1.1 -1.5 FIG003461: hypothetical protein compare
GFF6989 -1.1 -1.5 Flagellar basal-body rod modification protein FlgD compare
GFF3870 -1.1 -4.5 Ribonuclease III (EC 3.1.26.3) compare
GFF4748 -1.1 -1.6 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF4447 -1.1 -5.6 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF5981 -1.1 -1.2 COGs COG3558 compare
GFF5601 -1.1 -2.5 Predicted hydrolase of the alpha/beta-hydrolase fold compare
GFF5721 -1.0 -1.8 Flagellar L-ring protein FlgH compare
GFF7019 -1.0 -2.5 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF3976 -1.0 -1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF5756 -1.0 -2.4 KEGG: flagellar protein FliT compare
GFF3152 -1.0 -2.6 hypothetical protein compare
GFF20 -1.0 -1.6 hypothetical protein compare
GFF3723 -1.0 -6.0 Cytochrome c5 compare
GFF1966 -1.0 -5.5 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF6875 -1.0 -4.5 hypothetical protein compare
GFF2835 -1.0 -2.8 putative TonB-dependent receptor compare
GFF2125 -1.0 -2.1 hypothetical protein compare
GFF4273 -1.0 -1.9 BUG/TctC family periplasmic protein compare
GFF5203 -1.0 -1.6 hypothetical protein compare
GFF3749 -1.0 -0.9 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF2609 -1.0 -2.1 Fructose ABC transporter, ATP-binding component FrcA compare
GFF3177 -1.0 -1.3 hypothetical protein compare
GFF1072 -1.0 -1.5 no description compare
GFF2090 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF466 -1.0 -1.7 hypothetical protein compare
GFF3790 -1.0 -3.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF6293 -1.0 -3.2 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF2307 -1.0 -5.3 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF169 -1.0 -5.3 Protein-glutamate methylesterase (EC 3.1.1.61) compare
GFF7011 -1.0 -2.8 Taurine ABC transporter, permease protein TauC compare
GFF3952 -0.9 -2.3 LSU ribosomal protein L19p compare
GFF3050 -0.9 -1.5 Lactam utilization protein LamB compare
GFF2302 -0.9 -4.8 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF2298 -0.9 -8.1 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF341 -0.9 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF5153 -0.9 -4.9 Putative ROK-family transcriptional regulator compare
GFF2164 -0.9 -4.4 Transcriptional regulator, IclR family compare
GFF6083 -0.9 -1.5 hypothetical protein PA3071 compare
GFF6700 -0.9 -2.4 Single-stranded-DNA-specific exonuclease RecJ compare
GFF6787 -0.9 -1.0 Copper tolerance protein compare
GFF5246 -0.9 -5.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF4301 -0.9 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
GFF2677 -0.9 -4.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1600 -0.9 -1.6 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) compare
GFF6857 -0.9 -2.1 hypothetical protein compare
GFF7321 -0.9 -1.6 Sensor histidine kinase GlrK compare
GFF4192 -0.9 -0.9 no description compare
GFF4437 -0.9 -4.1 Low-complexity acidic protein, XCC2875 type compare
GFF5841 -0.9 -1.2 Auxin efflux carrier family protein compare
GFF6695 -0.9 -5.5 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF4623 -0.9 -2.3 Transcriptional regulator, AcrR family compare
GFF5877 -0.9 -2.8 Probable proline rich signal peptide protein compare
GFF733 -0.9 -1.4 no description compare
GFF4069 -0.9 -2.1 DNA-binding heavy metal response regulator compare
GFF3380 -0.9 -2.4 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) compare
GFF3034 -0.9 -1.0 no description compare
GFF2297 -0.9 -5.8 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF2304 -0.9 -5.2 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF290 -0.9 -4.3 Cell division coordinator CpoB compare
GFF5484 -0.8 -3.0 Protein translocase subunit YajC compare
GFF1984 -0.8 -1.7 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF5798 -0.8 -1.4 hypothetical protein compare
GFF5122 -0.8 -1.0 AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination compare
GFF3715 -0.8 -1.9 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) compare
GFF4625 -0.8 -2.8 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF4250 -0.8 -2.7 Transcriptional regulator, AcrR family compare
GFF2306 -0.8 -5.0 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF1873 -0.8 -2.1 KEGG: LacI family transcriptional regulator compare
GFF6036 -0.8 -3.6 DNA translocase FtsK compare
GFF3660 -0.8 -5.3 integral membrane sensor signal transduction histidine kinase compare
GFF2073 -0.8 -2.6 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF2273 -0.8 -2.9 Transcriptional regulator, AcrR family compare
GFF244 -0.8 -2.9 Cys regulon transcriptional activator CysB compare
GFF2182 -0.8 -4.9 Inner membrane component of TAM transport system compare
GFF2844 -0.8 -4.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF646 -0.8 -1.2 no description compare
GFF2610 -0.8 -4.4 Fructose ABC transporter, permease component FrcC compare
GFF2777 -0.8 -2.2 Uncharacterized UPF0721 integral membrane protein compare
GFF3841 -0.8 -3.6 Uncharacterized protein EC-HemX compare
GFF1830 -0.8 -1.4 TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 compare
GFF1355 -0.8 -1.0 Transcriptional regulator, LysR family compare
GFF7328 -0.8 -1.9 no description compare
GFF5876 -0.8 -4.1 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF3153 -0.8 -1.5 Two-component transcriptional response regulator, LuxR family compare
GFF6168 -0.8 -0.5 Na(+) H(+) antiporter subunit G compare
GFF2978 -0.8 -1.8 Aromatic ring-cleaving dioxygenase compare
GFF487 -0.8 -4.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF4647 -0.8 -1.7 no description compare
GFF4237 -0.8 -2.1 no description compare
GFF7053 -0.7 -1.8 Transcriptional regulator, LysR family compare
GFF1668 -0.7 -1.9 BUG/TctC family periplasmic protein compare
GFF3653 -0.7 -5.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF7345 -0.7 -1.1 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
GFF2853 -0.7 -1.5 DNA-binding protein HU-beta compare
GFF2002 -0.7 -1.8 Thioredoxin related protein PA2694 compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin Supernatant; Cryptococcus across organisms