Experiment set1S469 for Escherichia coli ECOR38
Phi92
Group: phageMedia: LB_plus_SM_buffer + MOI 10
Culturing: Ecoli_ECOR38_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 11/24/2024
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 15 genes in this experiment
For phage MOI 10 in Escherichia coli ECOR38
For phage MOI 10 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial MutL-MutS system | 1 |
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
| Lipid A modifications | 1 |
| Ribosome biogenesis bacterial | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Purine metabolism
- Pyrimidine metabolism
- Lipopolysaccharide biosynthesis
- Folate biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pseudouridine degradation | 2 | 2 | 1 |
| 2-deoxy-D-ribose degradation I | 3 | 3 | 1 |
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 3 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 6 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 7 | 1 |
| peptidoglycan recycling II | 10 | 7 | 1 |
| peptidoglycan recycling I | 14 | 14 | 1 |