Experiment set1S464 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

200 most important genes:

  gene name fitness t score description  
GFF5158 -4.0 -5.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF2847 -3.8 -3.7 histone-like nucleoid-structuring protein H-NS compare
GFF255 -3.8 -2.6 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF1756 -3.7 -2.5 hypothetical protein compare
GFF3889 -3.6 -2.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3890 -3.6 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF6512 -3.5 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF5896 -3.3 -8.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF2515 -3.3 -3.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF5941 -3.2 -2.1 hypothetical protein compare
GFF6513 -3.2 -7.4 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF6022 -3.2 -9.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF966 -3.1 -7.9 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF5261 -3.1 -10.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF7255 -3.0 -2.8 BUG/TctC family periplasmic protein compare
GFF2627 -2.8 -5.3 Chorismate synthase (EC 4.2.3.5) compare
GFF5324 -2.8 -2.7 Shikimate kinase I (EC 2.7.1.71) compare
GFF3265 -2.8 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF6042 -2.7 -4.5 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF302 -2.7 -1.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF944 -2.6 -3.9 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF339 -2.6 -4.8 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF3888 -2.5 -6.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF372 -2.5 -8.4 PMID: 11481431 compare
GFF3941 -2.5 -1.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5118 -2.5 -4.1 gluconolactonase family protein compare
GFF5325 -2.5 -2.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF5509 -2.5 -2.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF239 -2.4 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF5267 -2.4 -3.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF5513 -2.3 -2.7 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF6876 -2.3 -13.5 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF3838 -2.3 -14.5 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF5523 -2.3 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF3089 -2.2 -3.0 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5065 -2.2 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3600 -2.2 -2.6 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF6878 -2.2 -13.4 hypothetical protein compare
GFF5512 -2.1 -3.5 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF6875 -2.1 -7.4 hypothetical protein compare
GFF3264 -2.1 -5.5 Methionine biosynthesis protein MetW compare
GFF1324 -2.0 -2.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF3928 -2.0 -2.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF1105 -1.9 -3.4 Helicase compare
GFF5076 -1.9 -10.4 hypothetical protein compare
GFF5307 -1.9 -4.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF270 -1.9 -12.8 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF6182 -1.9 -4.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF4625 -1.8 -5.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF5333 -1.8 -3.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF1106 -1.8 -3.2 UvrD/REP helicase compare
GFF4626 -1.7 -6.5 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF7018 -1.6 -2.8 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF4447 -1.6 -7.3 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF4462 -1.6 -2.2 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF5057 -1.6 -12.6 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF7295 -1.6 -5.2 HPr kinase/phosphorylase compare
GFF968 -1.5 -3.0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF269 -1.5 -4.9 2-methylaconitate isomerase compare
GFF3790 -1.5 -3.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF292 -1.5 -10.9 Tol-Pal system beta propeller repeat protein TolB compare
GFF268 -1.4 -6.4 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
GFF967 -1.4 -10.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5812 -1.4 -2.0 DNA-binding heavy metal response regulator compare
GFF3438 -1.4 -2.4 Amidohydrolase family protein compare
GFF4197 -1.4 -2.3 Transcriptional regulator, LysR family compare
GFF5279 -1.4 -4.1 Fructokinase (EC 2.7.1.4) compare
GFF5605 -1.4 -3.9 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF1188 -1.4 -3.4 Thiazole synthase (EC 2.8.1.10) compare
GFF489 -1.4 -3.5 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF4298 -1.4 -1.5 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
GFF3870 -1.4 -5.0 Ribonuclease III (EC 3.1.26.3) compare
GFF5603 -1.4 -7.4 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF3425 -1.4 -2.1 no description compare
GFF5876 -1.4 -6.0 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF6857 -1.4 -1.8 hypothetical protein compare
GFF5369 -1.3 -2.6 Large-conductance mechanosensitive channel compare
GFF244 -1.3 -4.2 Cys regulon transcriptional activator CysB compare
GFF6250 -1.3 -7.9 Glutamate--cysteine ligase-like protein YbdK compare
GFF409 -1.3 -4.5 Osmolarity sensory histidine kinase EnvZ compare
GFF291 -1.3 -6.7 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF271 -1.3 -7.8 2-methylcitrate synthase (EC 2.3.3.5) compare
GFF5666 -1.3 -3.6 Prevent host death protein, Phd antitoxin compare
GFF273 -1.3 -6.1 Transcriptional regulator, Xre family compare
GFF5604 -1.3 -6.9 D-xylose ABC transporter, permease protein XylH compare
GFF5922 -1.3 -3.1 T6SS forkhead associated domain protein ImpI/VasC compare
GFF2073 -1.3 -3.1 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF3254 -1.2 -9.5 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF7016 -1.2 -1.7 FAD-dependent oxidoreductase compare
GFF6249 -1.2 -5.5 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF946 -1.2 -3.2 Iron-sulfur cluster regulator IscR compare
GFF2090 -1.2 -3.2 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF3767 -1.2 -1.2 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
GFF6700 -1.2 -2.9 Single-stranded-DNA-specific exonuclease RecJ compare
GFF2734 -1.2 -5.1 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF934 -1.2 -5.9 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF2804 -1.2 -2.4 Membrane protein compare
GFF3584 -1.1 -1.4 hypothetical protein compare
GFF5815 -1.1 -1.7 Uncharacterized MFS-type transporter compare
GFF6986 -1.1 -1.0 hypothetical protein compare
GFF168 -1.1 -4.5 MCP methyltransferase, CheR-type compare
GFF4120 -1.1 -1.3 no description compare
GFF5266 -1.1 -6.9 Transaldolase (EC 2.2.1.2) compare
GFF1213 -1.1 -3.4 Oligopeptide transport permease protein OppB-like @ Glutathione ABC transporter, permease protein GsiC compare
GFF680 -1.1 -1.3 RecA/RadA recombinase compare
GFF3152 -1.1 -2.3 hypothetical protein compare
GFF4748 -1.1 -2.0 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF6379 -1.1 -2.4 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF624 -1.1 -1.6 hypothetical protein compare
GFF7348 -1.1 -1.6 Oxidoreductase, aldo/keto reductase family compare
GFF575 -1.1 -6.0 Tol-Pal system protein TolQ compare
GFF3320 -1.1 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF5491 -1.1 -4.1 Peptide deformylase (EC 3.5.1.88) compare
GFF5246 -1.0 -5.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF6161 -1.0 -1.4 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF6378 -1.0 -1.8 Nicotinamidase (EC 3.5.1.19) compare
GFF6271 -1.0 -1.8 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF213 -1.0 -3.3 tmRNA-binding protein SmpB compare
GFF2725 -1.0 -2.4 Isochorismatase (EC 3.3.2.1) compare
GFF2475 -1.0 -1.6 no description compare
GFF5627 -1.0 -3.7 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF6294 -1.0 -2.8 Cell division protein compare
GFF4215 -1.0 -1.6 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ compare
GFF2192 -0.9 -2.8 FIG00932626: hypothetical protein compare
GFF5162 -0.9 -1.1 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF219 -0.9 -2.6 GTP-binding protein TypA/BipA compare
GFF3050 -0.9 -1.1 Lactam utilization protein LamB compare
GFF4670 -0.9 -3.6 Transcriptional regulator, AcrR family compare
GFF2730 -0.9 -2.3 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF3130 -0.9 -1.6 hypothetical protein compare
GFF6570 -0.9 -1.8 hypothetical protein compare
GFF177 -0.9 -1.7 Glutamine ABC transporter, ATP-binding protein GlnQ compare
GFF1875 -0.9 -0.9 no description compare
GFF4282 -0.9 -1.7 BUG/TctC family periplasmic protein compare
GFF576 -0.9 -1.6 Tol biopolymer transport system, TolR protein compare
GFF6862 -0.9 -3.3 Two-component system sensor histidine kinase compare
GFF2183 -0.9 -6.3 Outer membrane component of TAM transport system compare
GFF5156 -0.9 -7.5 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF4106 -0.9 -1.3 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF7239 -0.9 -1.6 Repair of Iron Centers di-iron protein compare
GFF1908 -0.9 -1.4 Short-chain dehydrogenases of various substrate specificities compare
GFF1539 -0.9 -1.1 RsbT co-antagonist protein RsbRA compare
GFF3133 -0.8 -1.7 hypothetical protein compare
GFF408 -0.8 -1.2 Two-component system response regulator OmpR compare
GFF1468 -0.8 -1.9 Transcriptional regulator, GntR family compare
GFF371 -0.8 -1.4 RNA-binding protein YhbY compare
GFF902 -0.8 -5.7 Transcriptional regulator, AsnC family compare
GFF859 -0.8 -1.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF5974 -0.8 -0.9 hypothetical protein compare
GFF89 -0.8 -1.4 hypothetical protein compare
GFF3865 -0.8 -3.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
GFF2398 -0.8 -1.7 Uncharacterized MFS-type transporter compare
GFF1047 -0.8 -5.3 hypothetical protein compare
GFF7380 -0.8 -5.0 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF5737 -0.8 -2.2 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF2533 -0.8 -2.0 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF7250 -0.8 -0.8 Putative transposase InsK for insertion sequence element IS150 compare
GFF6995 -0.8 -1.7 Flagellar M-ring protein FliF compare
GFF7133 -0.8 -2.3 Catalase-like heme-binding protein compare
GFF577 -0.8 -2.0 TolA protein compare
GFF4173 -0.8 -3.8 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14) compare
GFF6591 -0.8 -3.6 Transcriptional regulator, GntR family compare
GFF6429 -0.8 -2.0 Pyruvate:Oxaloacetate transcarboxylase domain protein compare
GFF290 -0.8 -3.8 Cell division coordinator CpoB compare
GFF3173 -0.8 -1.7 Transcriptional regulator, IclR family compare
GFF4710 -0.8 -1.4 MutT/Nudix family protein compare
GFF4492 -0.8 -3.7 Protein of unknown function DUF484 compare
GFF3510 -0.8 -1.1 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF5877 -0.8 -2.5 Probable proline rich signal peptide protein compare
GFF1611 -0.8 -3.5 no description compare
GFF3394 -0.8 -0.9 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF2123 -0.8 -1.3 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF2182 -0.8 -5.1 Inner membrane component of TAM transport system compare
GFF5049 -0.8 -1.1 NAD-dependent protein deacetylase of SIR2 family compare
GFF2570 -0.8 -1.9 Rhodanese-related sulfurtransferase YibN compare
GFF5987 -0.8 -2.6 Response regulator BaeR compare
GFF2111 -0.8 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF309 -0.8 -1.6 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.59) compare
GFF2978 -0.7 -1.8 Aromatic ring-cleaving dioxygenase compare
GFF2844 -0.7 -4.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF2273 -0.7 -2.7 Transcriptional regulator, AcrR family compare
GFF1775 -0.7 -1.4 no description compare
GFF2251 -0.7 -2.0 no description compare
GFF2758 -0.7 -2.4 Transcriptional regulator, RpiR family compare
GFF2344 -0.7 -1.7 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF3327 -0.7 -2.6 RidA/YER057c/UK114 superfamily, group 1 compare
GFF3085 -0.7 -1.7 no description compare
GFF6076 -0.7 -3.8 Spermidine synthase-like protein compare
GFF2297 -0.7 -5.5 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF4991 -0.7 -1.0 Polyhydroxyalkanoate granule-associated protein PhaF compare
GFF6273 -0.7 -2.4 Nicotinamide-nucleotide amidase (EC 3.5.1.42) compare
GFF5383 -0.7 -1.8 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF1529 -0.7 -1.0 Transcriptional regulator, AcrR family compare
GFF4688 -0.7 -2.0 Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC compare
GFF497 -0.7 -3.2 Phytoene synthase (EC 2.5.1.32) compare
GFF2436 -0.7 -1.2 no description compare
GFF2307 -0.7 -3.6 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF1632 -0.7 -1.0 RNA polymerase ECF-type sigma factor compare
GFF5893 -0.7 -1.8 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
GFF4216 -0.7 -0.8 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin Supernatant; Cryptococcus across organisms