Experiment set1S462 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

200 most important genes:

  gene name fitness t score description  
GFF5324 -4.1 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF255 -3.9 -2.7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF2627 -3.9 -5.3 Chorismate synthase (EC 4.2.3.5) compare
GFF5267 -3.8 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2515 -3.8 -3.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF5158 -3.6 -7.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5896 -3.6 -8.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF5261 -3.5 -10.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF5512 -3.5 -2.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF944 -3.4 -4.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF6182 -3.3 -4.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF3890 -3.3 -4.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3089 -3.3 -3.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5325 -3.2 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF6022 -3.1 -9.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF966 -3.0 -8.4 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF6876 -2.9 -15.0 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF3888 -2.9 -7.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF408 -2.8 -2.7 Two-component system response regulator OmpR compare
GFF302 -2.8 -1.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF3838 -2.7 -16.0 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF1105 -2.7 -4.0 Helicase compare
GFF5666 -2.6 -4.3 Prevent host death protein, Phd antitoxin compare
GFF3265 -2.6 -3.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF6512 -2.5 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF3600 -2.5 -2.4 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF3889 -2.5 -3.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF6875 -2.5 -8.3 hypothetical protein compare
GFF239 -2.4 -2.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF5523 -2.4 -1.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1106 -2.3 -3.5 UvrD/REP helicase compare
GFF6878 -2.3 -15.1 hypothetical protein compare
GFF6042 -2.3 -4.8 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF5513 -2.3 -3.0 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF6513 -2.2 -5.3 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF7178 -2.2 -2.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF5118 -2.2 -3.8 gluconolactonase family protein compare
GFF7295 -2.1 -6.1 HPr kinase/phosphorylase compare
GFF968 -2.0 -3.2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3941 -2.0 -2.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5509 -1.9 -4.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1324 -1.9 -3.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF339 -1.9 -4.5 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF270 -1.9 -13.3 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF372 -1.8 -7.1 PMID: 11481431 compare
GFF576 -1.8 -5.0 Tol biopolymer transport system, TolR protein compare
GFF3264 -1.8 -4.2 Methionine biosynthesis protein MetW compare
GFF409 -1.8 -5.4 Osmolarity sensory histidine kinase EnvZ compare
GFF4352 -1.7 -2.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF5065 -1.7 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF489 -1.7 -4.6 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF2730 -1.7 -3.4 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF5919 -1.7 -1.3 KEGG: type VI secretion system secreted protein Hcp compare
GFF6570 -1.6 -2.8 hypothetical protein compare
GFF4447 -1.6 -7.6 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF5076 -1.6 -10.0 hypothetical protein compare
GFF4839 -1.6 -3.2 Transcriptional regulator PA2737, MerR family compare
GFF5369 -1.6 -2.9 Large-conductance mechanosensitive channel compare
GFF2804 -1.6 -3.1 Membrane protein compare
GFF5057 -1.5 -12.6 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF5877 -1.5 -4.1 Probable proline rich signal peptide protein compare
GFF6839 -1.5 -2.2 hypothetical protein compare
GFF291 -1.5 -8.0 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF2911 -1.4 -4.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
GFF3651 -1.4 -1.2 PTS system, IIA component compare
GFF6249 -1.4 -6.1 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF575 -1.4 -7.5 Tol-Pal system protein TolQ compare
GFF5491 -1.4 -5.0 Peptide deformylase (EC 3.5.1.88) compare
GFF5988 -1.4 -1.4 Sensory histidine kinase BaeS compare
GFF4364 -1.4 -2.3 Transcriptional regulator, LysR family compare
GFF5604 -1.4 -6.6 D-xylose ABC transporter, permease protein XylH compare
GFF4107 -1.3 -1.7 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF273 -1.3 -6.5 Transcriptional regulator, Xre family compare
GFF168 -1.3 -4.9 MCP methyltransferase, CheR-type compare
GFF5603 -1.3 -9.3 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF1487 -1.3 -3.0 Tetrapartite efflux system component, FusD-like compare
GFF577 -1.3 -1.9 TolA protein compare
GFF7294 -1.3 -3.4 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF1475 -1.2 -1.6 no description compare
GFF3790 -1.2 -4.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF5246 -1.2 -7.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF2123 -1.2 -2.0 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF1468 -1.2 -2.5 Transcriptional regulator, GntR family compare
GFF268 -1.2 -5.2 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
GFF244 -1.2 -4.1 Cys regulon transcriptional activator CysB compare
GFF4625 -1.2 -3.8 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF292 -1.2 -9.3 Tol-Pal system beta propeller repeat protein TolB compare
GFF4626 -1.2 -5.0 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF967 -1.2 -9.0 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF378 -1.1 -2.4 RNA (nucleoside 2'-O)-methyltransferase compare
GFF1072 -1.1 -2.4 no description compare
GFF5721 -1.1 -2.3 Flagellar L-ring protein FlgH compare
GFF3254 -1.1 -8.7 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF6250 -1.1 -7.6 Glutamate--cysteine ligase-like protein YbdK compare
GFF6932 -1.1 -2.4 no description compare
GFF6036 -1.1 -5.1 DNA translocase FtsK compare
GFF4462 -1.1 -1.7 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF1602 -1.1 -2.0 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF4792 -1.1 -2.7 PhnB protein compare
GFF1051 -1.1 -1.8 no description compare
GFF2050 -1.1 -1.9 hypothetical protein compare
GFF5605 -1.1 -4.1 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF2073 -1.1 -3.9 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF341 -1.1 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF3705 -1.0 -1.2 Amidases related to nicotinamidase compare
GFF4362 -1.0 -1.4 BUG/TctC family periplasmic protein compare
GFF2398 -1.0 -2.1 Uncharacterized MFS-type transporter compare
GFF2273 -1.0 -3.3 Transcriptional regulator, AcrR family compare
GFF271 -1.0 -5.7 2-methylcitrate synthase (EC 2.3.3.5) compare
GFF2192 -1.0 -1.9 FIG00932626: hypothetical protein compare
GFF3152 -1.0 -2.5 hypothetical protein compare
GFF2734 -1.0 -4.7 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF487 -1.0 -5.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF7345 -1.0 -1.4 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
GFF269 -1.0 -3.2 2-methylaconitate isomerase compare
GFF4346 -1.0 -1.4 no description compare
GFF902 -0.9 -6.2 Transcriptional regulator, AsnC family compare
GFF2978 -0.9 -2.2 Aromatic ring-cleaving dioxygenase compare
GFF1587 -0.9 -1.5 no description compare
GFF5317 -0.9 -1.2 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF5279 -0.9 -2.5 Fructokinase (EC 2.7.1.4) compare
GFF680 -0.9 -1.5 RecA/RadA recombinase compare
GFF3438 -0.9 -1.7 Amidohydrolase family protein compare
GFF5941 -0.9 -1.2 hypothetical protein compare
GFF303 -0.9 -3.5 Probable transcriptional regulatory protein YebC compare
GFF5266 -0.9 -6.6 Transaldolase (EC 2.2.1.2) compare
GFF5876 -0.9 -4.6 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF4788 -0.9 -1.8 Uncharacterized protein COG3236 compare
GFF946 -0.9 -2.6 Iron-sulfur cluster regulator IscR compare
GFF733 -0.9 -1.5 no description compare
GFF5307 -0.9 -2.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF5333 -0.9 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF6869 -0.8 -4.1 no description compare
GFF3425 -0.8 -1.8 no description compare
GFF122 -0.8 -1.6 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) compare
GFF3952 -0.8 -2.3 LSU ribosomal protein L19p compare
GFF2183 -0.8 -6.5 Outer membrane component of TAM transport system compare
GFF219 -0.8 -2.7 GTP-binding protein TypA/BipA compare
GFF2231 -0.8 -1.7 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) compare
GFF3569 -0.8 -1.1 Organic hydroperoxide resistance protein compare
GFF5922 -0.8 -1.5 T6SS forkhead associated domain protein ImpI/VasC compare
GFF4187 -0.8 -1.8 hypothetical protein compare
GFF6701 -0.8 -1.4 Regulatory protein, RpfE type compare
GFF497 -0.8 -3.7 Phytoene synthase (EC 2.5.1.32) compare
GFF3347 -0.8 -2.0 Adenylate cyclase (EC 4.6.1.1) compare
GFF624 -0.8 -1.5 hypothetical protein compare
GFF2182 -0.8 -5.0 Inner membrane component of TAM transport system compare
GFF1119 -0.8 -3.1 Ribonuclease HI (EC 3.1.26.4) compare
GFF2475 -0.8 -2.2 no description compare
GFF4033 -0.8 -0.9 no description compare
GFF6060 -0.8 -1.9 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF2111 -0.8 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF3870 -0.8 -3.1 Ribonuclease III (EC 3.1.26.3) compare
GFF5756 -0.8 -1.5 KEGG: flagellar protein FliT compare
GFF4106 -0.8 -1.2 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF1742 -0.8 -0.9 hypothetical protein compare
GFF821 -0.8 -1.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF6990 -0.8 -1.0 hypothetical protein compare
GFF3451 -0.8 -1.0 no description compare
GFF6087 -0.8 -4.3 Transcriptional regulator, AcrR family compare
GFF6252 -0.8 -1.4 Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1) compare
GFF4069 -0.8 -1.8 DNA-binding heavy metal response regulator compare
GFF4456 -0.8 -3.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF5762 -0.8 -1.0 Flagellar motor rotation protein MotB compare
GFF3380 -0.7 -2.7 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) compare
GFF4454 -0.7 -3.1 Exoribonuclease II (EC 3.1.13.1) compare
GFF5720 -0.7 -1.9 Flagellar basal-body rod protein FlgG compare
GFF2659 -0.7 -1.9 Electron transfer flavoprotein, alpha subunit compare
GFF2104 -0.7 -0.9 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) compare
GFF5030 -0.7 -0.9 no description compare
GFF3660 -0.7 -4.4 integral membrane sensor signal transduction histidine kinase compare
GFF2427 -0.7 -1.5 Transcriptional regulator, MarR family compare
GFF103 -0.7 -1.1 General secretion pathway protein E compare
GFF1661 -0.7 -1.1 no description compare
GFF4663 -0.7 -1.4 no description compare
GFF2251 -0.7 -2.0 no description compare
GFF590 -0.7 -1.5 Transcriptional regulator, LysR family compare
GFF254 -0.7 -5.2 N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2 compare
GFF2090 -0.7 -1.7 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF2372 -0.7 -1.1 Similar to citrate lyase beta chain, 3 compare
GFF4466 -0.7 -1.5 Uncharacterized protein Ajs_3662 compare
GFF2203 -0.7 -1.6 no description compare
GFF6357 -0.7 -2.1 T6SS forkhead associated domain protein ImpI/VasC compare
GFF2136 -0.7 -2.3 Ribokinase (EC 2.7.1.15) compare
GFF6591 -0.7 -3.1 Transcriptional regulator, GntR family compare
GFF2164 -0.7 -3.9 Transcriptional regulator, IclR family compare
GFF7255 -0.7 -0.6 BUG/TctC family periplasmic protein compare
GFF5943 -0.7 -1.9 hypothetical protein compare
GFF1155 -0.7 -2.7 Putative transmembrane protein compare
GFF3841 -0.7 -3.5 Uncharacterized protein EC-HemX compare
GFF934 -0.7 -4.4 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF4585 -0.7 -1.8 hypothetical protein compare
GFF2826 -0.7 -3.8 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) compare
GFF2307 -0.7 -4.1 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF1434 -0.7 -1.6 hypothetical protein compare
GFF1829 -0.7 -1.4 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
GFF4640 -0.7 -5.7 hypothetical protein compare
GFF2758 -0.7 -2.2 Transcriptional regulator, RpiR family compare
GFF6465 -0.7 -1.4 hypothetical protein compare
GFF2714 -0.7 -2.8 2-ketogluconate utilization repressor PtxS compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin Supernatant; Cryptococcus across organisms