Experiment set1S461 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus

200 most important genes:

  gene name fitness t score description  
GFF944 -4.3 -3.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF2627 -4.3 -4.2 Chorismate synthase (EC 4.2.3.5) compare
GFF5158 -4.2 -6.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5324 -4.1 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF5267 -4.1 -2.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1756 -3.8 -2.6 hypothetical protein compare
GFF3265 -3.7 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF6512 -3.6 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF6022 -3.5 -9.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF966 -3.4 -7.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3089 -3.4 -3.3 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5896 -3.4 -9.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF6182 -3.4 -4.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF5118 -3.3 -4.5 gluconolactonase family protein compare
GFF5325 -3.2 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF372 -3.2 -10.0 PMID: 11481431 compare
GFF6878 -3.2 -17.3 hypothetical protein compare
GFF6876 -3.2 -15.4 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF6513 -3.1 -7.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3890 -3.1 -4.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF239 -3.0 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF4626 -3.0 -8.2 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF302 -2.8 -1.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF967 -2.8 -15.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF3749 -2.8 -1.7 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF409 -2.7 -6.0 Osmolarity sensory histidine kinase EnvZ compare
GFF6875 -2.7 -8.5 hypothetical protein compare
GFF3888 -2.6 -6.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF339 -2.6 -5.2 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF6042 -2.6 -4.9 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF3941 -2.6 -1.8 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5076 -2.6 -15.1 hypothetical protein compare
GFF5261 -2.5 -10.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF968 -2.5 -3.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2515 -2.5 -4.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF5513 -2.5 -3.7 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF3889 -2.4 -3.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF6700 -2.4 -4.2 Single-stranded-DNA-specific exonuclease RecJ compare
GFF5065 -2.3 -1.6 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF7295 -2.3 -6.4 HPr kinase/phosphorylase compare
GFF3600 -2.3 -2.7 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF489 -2.3 -5.8 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF2847 -2.3 -2.7 histone-like nucleoid-structuring protein H-NS compare
GFF5512 -2.3 -3.7 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF3838 -2.2 -12.9 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF5509 -2.2 -4.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF577 -2.1 -3.4 TolA protein compare
GFF5523 -2.1 -2.0 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF575 -2.1 -9.2 Tol-Pal system protein TolQ compare
GFF408 -2.0 -2.3 Two-component system response regulator OmpR compare
GFF5307 -2.0 -4.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF291 -2.0 -9.0 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF2578 -1.9 -6.9 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF2677 -1.9 -8.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1324 -1.9 -3.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF5605 -1.7 -5.9 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF292 -1.7 -12.2 Tol-Pal system beta propeller repeat protein TolB compare
GFF5057 -1.7 -12.9 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF5841 -1.6 -1.8 Auxin efflux carrier family protein compare
GFF4447 -1.6 -7.1 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF4748 -1.6 -1.9 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF3160 -1.5 -2.4 Transcriptional regulator YeiE, LysR family compare
GFF4625 -1.5 -4.0 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF3264 -1.5 -4.2 Methionine biosynthesis protein MetW compare
GFF1105 -1.5 -3.2 Helicase compare
GFF2734 -1.5 -6.3 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF5666 -1.5 -3.2 Prevent host death protein, Phd antitoxin compare
GFF624 -1.5 -2.0 hypothetical protein compare
GFF5603 -1.5 -8.7 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF5604 -1.4 -8.2 D-xylose ABC transporter, permease protein XylH compare
GFF576 -1.4 -3.8 Tol biopolymer transport system, TolR protein compare
GFF2073 -1.4 -3.3 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF6250 -1.4 -9.1 Glutamate--cysteine ligase-like protein YbdK compare
GFF168 -1.4 -5.3 MCP methyltransferase, CheR-type compare
GFF4640 -1.4 -11.1 hypothetical protein compare
GFF1106 -1.4 -2.7 UvrD/REP helicase compare
GFF255 -1.3 -1.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF2123 -1.3 -1.8 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF4817 -1.3 -2.8 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF122 -1.3 -2.6 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) compare
GFF290 -1.3 -6.4 Cell division coordinator CpoB compare
GFF5156 -1.3 -10.7 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF3152 -1.2 -2.9 hypothetical protein compare
GFF7321 -1.2 -2.6 Sensor histidine kinase GlrK compare
GFF1356 -1.2 -1.6 Putative manganese efflux pump MntP compare
GFF3254 -1.2 -9.1 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF2730 -1.2 -3.0 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF6197 -1.2 -2.2 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF7242 -1.2 -1.6 hypothetical protein compare
GFF5919 -1.2 -1.0 KEGG: type VI secretion system secreted protein Hcp compare
GFF6839 -1.2 -1.3 hypothetical protein compare
GFF4216 -1.2 -1.2 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF1775 -1.2 -1.7 no description compare
GFF6036 -1.2 -3.9 DNA translocase FtsK compare
GFF1475 -1.2 -1.4 no description compare
GFF341 -1.1 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF7248 -1.1 -1.7 no description compare
GFF2804 -1.1 -2.2 Membrane protein compare
GFF5019 -1.1 -2.4 RNA-binding protein compare
GFF6996 -1.1 -1.4 Flagellar hook-basal body complex protein FliE compare
GFF6249 -1.1 -5.2 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF5941 -1.1 -1.3 hypothetical protein compare
GFF270 -1.1 -8.3 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF2182 -1.1 -7.3 Inner membrane component of TAM transport system compare
GFF5369 -1.1 -1.6 Large-conductance mechanosensitive channel compare
GFF1966 -1.1 -6.3 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF3438 -1.1 -1.9 Amidohydrolase family protein compare
GFF269 -1.0 -3.4 2-methylaconitate isomerase compare
GFF3854 -1.0 -1.9 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF5491 -1.0 -4.3 Peptide deformylase (EC 3.5.1.88) compare
GFF273 -1.0 -4.9 Transcriptional regulator, Xre family compare
GFF2240 -1.0 -1.5 hypothetical protein compare
GFF2183 -1.0 -6.6 Outer membrane component of TAM transport system compare
GFF2819 -1.0 -2.0 Phosphoenolpyruvate synthase regulatory protein compare
GFF6195 -1.0 -2.0 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1047 -1.0 -6.3 hypothetical protein compare
GFF4437 -1.0 -4.7 Low-complexity acidic protein, XCC2875 type compare
GFF6168 -1.0 -1.1 Na(+) H(+) antiporter subunit G compare
GFF3651 -1.0 -1.5 PTS system, IIA component compare
GFF1765 -1.0 -1.9 putative membrane protein compare
GFF5737 -1.0 -2.1 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF4954 -1.0 -1.2 no description compare
GFF3653 -1.0 -6.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF5266 -1.0 -5.9 Transaldolase (EC 2.2.1.2) compare
GFF2090 -1.0 -2.9 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF2659 -1.0 -2.4 Electron transfer flavoprotein, alpha subunit compare
GFF431 -1.0 -2.3 Esterase/lipase compare
GFF4665 -1.0 -2.4 no description compare
GFF5040 -1.0 -6.6 3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59) compare
GFF6638 -0.9 -5.3 no description compare
GFF6869 -0.9 -4.2 no description compare
GFF6432 -0.9 -1.3 no description compare
GFF1941 -0.9 -2.5 hypothetical protein compare
GFF6186 -0.9 -3.9 no description compare
GFF4454 -0.9 -3.5 Exoribonuclease II (EC 3.1.13.1) compare
GFF2273 -0.9 -2.7 Transcriptional regulator, AcrR family compare
GFF3736 -0.9 -2.0 UPF0102 protein YraN compare
GFF21 -0.9 -1.6 no description compare
GFF3723 -0.9 -5.6 Cytochrome c5 compare
GFF2300 -0.9 -5.0 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF4416 -0.9 -1.6 Conjugative transfer protein TrbD compare
GFF808 -0.9 -7.4 Polyhydroxyalkanoic acid synthase compare
GFF3406 -0.9 -5.7 Benzoyl-CoA oxygenase component A compare
GFF6555 -0.9 -1.2 no description compare
GFF6465 -0.9 -1.7 hypothetical protein compare
GFF7380 -0.9 -4.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF6383 -0.9 -1.2 FIG00440100: hypothetical protein compare
GFF6871 -0.9 -6.5 FIG00905613: hypothetical protein compare
GFF6870 -0.9 -5.3 FIG00904791: hypothetical protein compare
GFF5876 -0.9 -4.3 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF6087 -0.9 -3.7 Transcriptional regulator, AcrR family compare
GFF2609 -0.9 -2.5 Fructose ABC transporter, ATP-binding component FrcA compare
GFF2302 -0.8 -5.7 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF2570 -0.8 -2.0 Rhodanese-related sulfurtransferase YibN compare
GFF7391 -0.8 -3.6 hypothetical protein compare
GFF1262 -0.8 -1.3 Rhodanese-related sulfurtransferase compare
GFF5317 -0.8 -1.0 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF3969 -0.8 -2.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
GFF163 -0.8 -2.2 no description compare
GFF4839 -0.8 -1.9 Transcriptional regulator PA2737, MerR family compare
GFF629 -0.8 -1.9 hypothetical protein compare
GFF5959 -0.8 -2.0 Putative amidase R03093 compare
GFF6378 -0.8 -1.2 Nicotinamidase (EC 3.5.1.19) compare
GFF3404 -0.8 -4.5 Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44) compare
GFF7019 -0.8 -1.7 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF5339 -0.8 -1.7 Phospholipid ABC transporter-binding protein MlaB compare
GFF6872 -0.8 -4.7 FIG00904907: hypothetical protein compare
GFF2206 -0.8 -2.3 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
GFF3715 -0.8 -2.0 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) compare
GFF5662 -0.8 -1.6 no description compare
GFF5877 -0.8 -2.3 Probable proline rich signal peptide protein compare
GFF2341 -0.8 -1.0 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF2844 -0.8 -4.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF3870 -0.8 -3.1 Ribonuclease III (EC 3.1.26.3) compare
GFF854 -0.8 -3.0 hypothetical protein compare
GFF3952 -0.8 -2.2 LSU ribosomal protein L19p compare
GFF254 -0.8 -5.8 N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2 compare
GFF5606 -0.8 -2.3 Xylose-responsive transcription regulator, ROK family compare
GFF2304 -0.8 -4.8 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF2582 -0.8 -3.8 Uncharacterized DUF3460-containg protein Bmul_0854 compare
GFF917 -0.8 -1.7 hypothetical protein compare
GFF6097 -0.8 -2.8 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149) compare
GFF7076 -0.8 -1.7 no description compare
GFF6294 -0.8 -2.1 Cell division protein compare
GFF6221 -0.8 -0.8 T6SS associated component TagF (ImpM) compare
GFF3874 -0.8 -1.5 Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) compare
GFF5188 -0.8 -1.0 no description compare
GFF3660 -0.8 -4.9 integral membrane sensor signal transduction histidine kinase compare
GFF371 -0.7 -1.8 RNA-binding protein YhbY compare
GFF4181 -0.7 -2.2 hypothetical protein compare
GFF4766 -0.7 -1.1 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 compare
GFF970 -0.7 -4.6 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF3403 -0.7 -4.1 Benzoate catabolism regulator with shikimate kinase domain compare
GFF1051 -0.7 -1.1 no description compare
GFF2344 -0.7 -1.8 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF750 -0.7 -2.2 Transcriptional regulator LigR, LysR family compare
GFF5484 -0.7 -3.0 Protein translocase subunit YajC compare
GFF2369 -0.7 -2.9 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF169 -0.7 -4.3 Protein-glutamate methylesterase (EC 3.1.1.61) compare
GFF3900 -0.7 -3.4 Transcriptional regulator, GntR family compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin Supernatant; Cryptococcus across organisms