Experiment set1S461 for Bacteroides stercoris CC31F
Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Chondroitin sulfate A sodium salt from bovine trachea (2.5 mg/mL)
Culturing: Bstercoris_CC31F_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/31/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 14 genes in this experiment
For carbon source Chondroitin sulfate A sodium salt from bovine trachea across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Pentose phosphate pathway
- Pentose and glucuronate interconversions
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Benzoate degradation via hydroxylation
- Aminophosphonate metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
- Limonene and pinene degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| xylitol degradation II | 2 | 1 | 1 |
| D-arabinitol degradation II | 2 | 1 | 1 |
| 2-deoxy-D-ribose degradation I | 3 | 2 | 1 |
| choline-O-sulfate degradation | 3 | 1 | 1 |
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 1 | 1 |
| 4-deoxy-L-threo-hex-4-enopyranuronate degradation | 5 | 5 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 3 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 4 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 15 | 1 |