Experiment set1S460 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus

200 most important genes:

  gene name fitness t score description  
GFF5158 -4.7 -7.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5324 -4.0 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF5267 -4.0 -2.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3889 -3.6 -2.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF6022 -3.5 -9.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF5261 -3.3 -9.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF255 -3.2 -3.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF3890 -3.2 -4.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF4626 -3.1 -7.8 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF339 -3.0 -5.0 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF3888 -3.0 -5.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF944 -3.0 -4.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3265 -3.0 -3.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF7295 -3.0 -5.6 HPr kinase/phosphorylase compare
GFF2627 -2.9 -5.5 Chorismate synthase (EC 4.2.3.5) compare
GFF3651 -2.9 -2.7 PTS system, IIA component compare
GFF6513 -2.8 -6.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF968 -2.8 -3.2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2515 -2.7 -3.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF5325 -2.7 -2.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF6182 -2.6 -4.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF3838 -2.5 -13.8 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF1756 -2.5 -2.4 hypothetical protein compare
GFF967 -2.5 -15.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5513 -2.5 -3.3 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF239 -2.5 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF966 -2.5 -8.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3941 -2.5 -1.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5076 -2.4 -13.6 hypothetical protein compare
GFF409 -2.4 -5.8 Osmolarity sensory histidine kinase EnvZ compare
GFF302 -2.4 -2.3 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF1105 -2.3 -3.5 Helicase compare
GFF5523 -2.3 -1.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF5065 -2.2 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF5896 -2.2 -8.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF6876 -2.2 -12.4 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF576 -2.2 -3.2 Tol biopolymer transport system, TolR protein compare
GFF6042 -2.1 -4.5 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF5509 -2.1 -4.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5512 -2.1 -3.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5739 -2.1 -1.7 Flagellar biosynthesis protein FliQ compare
GFF4748 -2.1 -2.4 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF5666 -2.1 -4.5 Prevent host death protein, Phd antitoxin compare
GFF372 -2.0 -6.5 PMID: 11481431 compare
GFF408 -1.9 -1.6 Two-component system response regulator OmpR compare
GFF5118 -1.9 -4.1 gluconolactonase family protein compare
GFF2949 -1.8 -1.3 no description compare
GFF4839 -1.8 -3.3 Transcriptional regulator PA2737, MerR family compare
GFF3152 -1.8 -4.0 hypothetical protein compare
GFF291 -1.8 -7.6 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF5307 -1.7 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF489 -1.7 -4.0 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3600 -1.7 -2.8 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF6161 -1.7 -2.1 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF1106 -1.7 -3.1 UvrD/REP helicase compare
GFF1602 -1.7 -2.0 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF575 -1.7 -8.2 Tol-Pal system protein TolQ compare
GFF3264 -1.6 -5.0 Methionine biosynthesis protein MetW compare
GFF4447 -1.6 -7.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF6878 -1.6 -10.8 hypothetical protein compare
GFF2578 -1.6 -6.4 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF3089 -1.6 -2.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF6221 -1.6 -1.1 T6SS associated component TagF (ImpM) compare
GFF292 -1.6 -11.0 Tol-Pal system beta propeller repeat protein TolB compare
GFF2677 -1.5 -7.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF341 -1.5 -8.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF2819 -1.5 -4.0 Phosphoenolpyruvate synthase regulatory protein compare
GFF6512 -1.5 -1.5 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF5057 -1.5 -11.8 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF4788 -1.5 -2.0 Uncharacterized protein COG3236 compare
GFF1047 -1.5 -8.3 hypothetical protein compare
GFF1324 -1.5 -3.0 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF168 -1.5 -6.6 MCP methyltransferase, CheR-type compare
GFF4298 -1.4 -1.4 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
GFF4625 -1.4 -3.7 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF6700 -1.4 -3.0 Single-stranded-DNA-specific exonuclease RecJ compare
GFF1984 -1.4 -2.6 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF6250 -1.4 -8.4 Glutamate--cysteine ligase-like protein YbdK compare
GFF3050 -1.4 -2.1 Lactam utilization protein LamB compare
GFF2847 -1.4 -1.5 histone-like nucleoid-structuring protein H-NS compare
GFF2386 -1.3 -2.3 Response regulator BaeR compare
GFF1582 -1.3 -2.2 BUG/TctC family periplasmic protein compare
GFF219 -1.3 -3.5 GTP-binding protein TypA/BipA compare
GFF1113 -1.3 -2.1 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF2123 -1.3 -1.8 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF4108 -1.3 -2.5 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF577 -1.3 -1.9 TolA protein compare
GFF2659 -1.3 -2.3 Electron transfer flavoprotein, alpha subunit compare
GFF5603 -1.3 -7.7 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF1156 -1.3 -1.8 Putative transmembrane protein compare
GFF6036 -1.3 -5.0 DNA translocase FtsK compare
GFF6249 -1.3 -6.3 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF3510 -1.3 -1.6 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF5605 -1.3 -4.1 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF6694 -1.3 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF6197 -1.2 -2.2 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF1468 -1.2 -2.3 Transcriptional regulator, GntR family compare
GFF2179 -1.2 -2.2 hypothetical protein compare
GFF270 -1.2 -8.5 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF2730 -1.2 -2.3 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF371 -1.2 -1.2 RNA-binding protein YhbY compare
GFF3900 -1.2 -4.2 Transcriptional regulator, GntR family compare
GFF4606 -1.2 -1.2 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF970 -1.2 -7.1 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1587 -1.2 -1.5 no description compare
GFF5927 -1.2 -1.8 3-oxoacyl-[ACP] synthase compare
GFF5156 -1.2 -9.3 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF2344 -1.2 -2.4 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF5040 -1.1 -8.0 3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59) compare
GFF3790 -1.1 -3.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF5266 -1.1 -7.1 Transaldolase (EC 2.2.1.2) compare
GFF6591 -1.1 -4.2 Transcriptional regulator, GntR family compare
GFF6760 -1.1 -3.3 Ferric iron ABC transporter, ATP-binding protein compare
GFF3406 -1.1 -7.2 Benzoyl-CoA oxygenase component A compare
GFF3854 -1.1 -2.1 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF4215 -1.1 -1.2 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ compare
GFF2073 -1.1 -3.7 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF5604 -1.1 -5.5 D-xylose ABC transporter, permease protein XylH compare
GFF6980 -1.1 -2.4 Mobile element protein compare
GFF6465 -1.1 -1.7 hypothetical protein compare
GFF4119 -1.0 -1.2 no description compare
GFF6246 -1.0 -3.5 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3254 -1.0 -7.7 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF6875 -1.0 -4.2 hypothetical protein compare
GFF2182 -1.0 -6.6 Inner membrane component of TAM transport system compare
GFF5577 -1.0 -1.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF4454 -1.0 -3.8 Exoribonuclease II (EC 3.1.13.1) compare
GFF4254 -1.0 -1.2 hypothetical protein compare
GFF2570 -1.0 -2.5 Rhodanese-related sulfurtransferase YibN compare
GFF5534 -1.0 -2.3 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF290 -1.0 -4.6 Cell division coordinator CpoB compare
GFF4437 -1.0 -4.1 Low-complexity acidic protein, XCC2875 type compare
GFF7063 -1.0 -0.8 Antibiotic biosynthesis monooxygenase compare
GFF5333 -1.0 -2.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF2971 -1.0 -1.2 Transcriptional regulator, LysR family compare
GFF6194 -1.0 -2.5 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF6439 -1.0 -1.9 Transcriptional regulator, LysR family compare
GFF2239 -1.0 -0.9 no description compare
GFF3073 -1.0 -2.9 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) compare
GFF7018 -1.0 -1.4 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF4640 -1.0 -7.8 hypothetical protein compare
GFF6095 -1.0 -2.3 1,2-phenylacetyl-CoA epoxidase, subunit C (EC 1.14.13.149) compare
GFF3125 -1.0 -2.2 no description compare
GFF5941 -0.9 -1.1 hypothetical protein compare
GFF7242 -0.9 -1.2 hypothetical protein compare
GFF6570 -0.9 -1.9 hypothetical protein compare
GFF6872 -0.9 -5.2 FIG00904907: hypothetical protein compare
GFF2183 -0.9 -6.5 Outer membrane component of TAM transport system compare
GFF819 -0.9 -1.9 Uncharacterized protein CC_2099 compare
GFF2631 -0.9 -1.8 Transcriptional regulator, ArsR family compare
GFF6839 -0.9 -1.2 hypothetical protein compare
GFF4085 -0.9 -2.0 Transcriptional regulator, LysR family compare
GFF3291 -0.9 -1.6 no description compare
GFF2107 -0.9 -2.2 no description compare
GFF2717 -0.9 -3.1 Epimerase KguE compare
GFF4360 -0.9 -1.1 no description compare
GFF5049 -0.9 -1.3 NAD-dependent protein deacetylase of SIR2 family compare
GFF4192 -0.9 -0.9 no description compare
GFF269 -0.9 -2.6 2-methylaconitate isomerase compare
GFF1306 -0.9 -2.2 no description compare
GFF3653 -0.9 -5.7 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1831 -0.9 -1.4 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF6195 -0.9 -1.8 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF2613 -0.9 -2.6 no description compare
GFF845 -0.9 -1.6 dTDP-glucose 4,6-dehydratase compare
GFF7258 -0.9 -1.9 Transcriptional regulator, IclR family compare
GFF2306 -0.9 -5.5 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF6340 -0.9 -1.0 no description compare
GFF5424 -0.9 -0.8 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF6349 -0.9 -2.4 no description compare
GFF2343 -0.9 -4.0 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF5030 -0.9 -1.0 no description compare
GFF808 -0.8 -6.7 Polyhydroxyalkanoic acid synthase compare
GFF815 -0.8 -1.4 COGs COG3777 compare
GFF6638 -0.8 -5.0 no description compare
GFF773 -0.8 -1.3 hypothetical protein compare
GFF4773 -0.8 -2.2 Broad-specificity amino acid ABC transporter, ATP-binding protein 1 compare
GFF2582 -0.8 -3.3 Uncharacterized DUF3460-containg protein Bmul_0854 compare
GFF1228 -0.8 -1.6 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
GFF4462 -0.8 -1.0 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF7238 -0.8 -0.9 no description compare
GFF3403 -0.8 -3.9 Benzoate catabolism regulator with shikimate kinase domain compare
GFF4766 -0.8 -1.1 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 compare
GFF273 -0.8 -3.7 Transcriptional regulator, Xre family compare
GFF127 -0.8 -1.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF4133 -0.8 -0.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
GFF3841 -0.8 -3.3 Uncharacterized protein EC-HemX compare
GFF6378 -0.8 -1.3 Nicotinamidase (EC 3.5.1.19) compare
GFF2643 -0.8 -1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF1782 -0.8 -2.9 integral membrane sensor signal transduction histidine kinase compare
GFF5090 -0.8 -1.6 Homoprotocatechuate degradative operon repressor compare
GFF2249 -0.8 -1.6 no description compare
GFF7380 -0.8 -4.3 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF4954 -0.8 -0.7 no description compare
GFF2926 -0.8 -2.6 FIG00349048: hypothetical protein compare
GFF2650 -0.8 -3.6 hypothetical protein compare
GFF2734 -0.8 -3.4 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF5915 -0.8 -2.3 T6SS secretion lipoprotein TssJ (VasD) compare
GFF1631 -0.8 -1.6 L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein compare
GFF5720 -0.8 -1.6 Flagellar basal-body rod protein FlgG compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin Supernatant; Cryptococcus across organisms