Experiment set1S46 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_04985 +1.0 2.1 HTH-type transcriptional regulator DmlR compare
MPMX19_00335 +0.9 2.1 Magnesium transport protein CorA compare
MPMX19_03123 +0.9 2.5 Citrate lyase acyl carrier protein compare
MPMX19_06737 +0.8 3.4 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_05176 +0.8 1.7 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_06230 +0.8 2.2 hypothetical protein compare
MPMX19_00472 +0.8 2.5 Protein HesB, heterocyst compare
MPMX19_00687 +0.8 2.1 hypothetical protein compare
MPMX19_03846 +0.8 2.8 hypothetical protein compare
MPMX19_02815 +0.8 2.1 2-keto-4-pentenoate hydratase compare
MPMX19_01394 +0.8 1.8 hypothetical protein compare
MPMX19_06569 +0.7 2.4 hypothetical protein compare
MPMX19_03897 +0.7 2.6 hypothetical protein compare
MPMX19_05853 +0.7 2.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06197 +0.7 1.3 hypothetical protein compare
MPMX19_04726 +0.7 2.7 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_01125 +0.7 1.8 hypothetical protein compare
MPMX19_03655 +0.7 1.2 hypothetical protein compare
MPMX19_05606 +0.7 1.2 hypothetical protein compare
MPMX19_03000 +0.7 2.6 Galactitol 2-dehydrogenase compare
MPMX19_00268 +0.7 2.1 Transcriptional regulatory protein OmpR compare
MPMX19_01565 +0.7 2.0 hypothetical protein compare
MPMX19_02536 +0.7 2.8 hypothetical protein compare
MPMX19_00074 +0.7 2.3 Electron transfer flavoprotein subunit beta compare
MPMX19_02511 +0.6 1.5 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_03496 +0.6 2.3 Protein FdhE compare
MPMX19_05906 +0.6 1.7 hypothetical protein compare
MPMX19_06897 +0.6 1.7 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04521 +0.6 2.6 Bifunctional protein PaaZ compare
MPMX19_05834 +0.6 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_06353 +0.6 1.1 hypothetical protein compare
MPMX19_06486 +0.6 2.7 Phenylacetate-coenzyme A ligase compare
MPMX19_06526 +0.6 2.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01401 +0.6 1.7 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_03699 +0.6 1.9 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_05104 +0.6 1.6 hypothetical protein compare
MPMX19_03195 +0.6 1.3 hypothetical protein compare
MPMX19_06989 +0.6 1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05624 +0.6 1.3 hypothetical protein compare
MPMX19_06395 +0.6 2.1 Inner membrane protein YqaA compare
MPMX19_00152 +0.6 1.5 hypothetical protein compare
MPMX19_02579 +0.6 1.5 hypothetical protein compare
MPMX19_06456 +0.6 1.3 hypothetical protein compare
MPMX19_02492 +0.5 1.6 hypothetical protein compare
MPMX19_03868 +0.5 2.4 Xylitol-binding protein compare
MPMX19_06513 +0.5 3.3 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_06006 +0.5 2.3 hypothetical protein compare
MPMX19_01719 +0.5 1.6 Putative fluoride ion transporter CrcB compare
MPMX19_02116 +0.5 1.1 Cold shock protein CspA compare
MPMX19_00206 +0.5 3.9 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_04898 +0.5 2.0 Transcriptional regulatory protein LnrK compare
MPMX19_00822 +0.5 3.1 Divalent metal cation transporter MntH compare
MPMX19_06519 +0.5 0.7 HTH-type transcriptional repressor NagR compare
MPMX19_02034 +0.5 1.9 Peptidoglycan-associated lipoprotein compare
MPMX19_04737 +0.5 2.0 Methenyltetrahydromethanopterin cyclohydrolase compare
MPMX19_03963 +0.5 3.1 hypothetical protein compare
MPMX19_04648 +0.5 1.9 hypothetical protein compare
MPMX19_03472 +0.5 1.2 Fatty acid metabolism regulator protein compare
MPMX19_06156 +0.5 1.8 hypothetical protein compare
MPMX19_00764 +0.5 1.9 ECF RNA polymerase sigma factor EcfG compare
MPMX19_04694 +0.5 1.3 Na(+)/H(+) antiporter subunit E1 compare
MPMX19_06171 +0.5 2.6 hypothetical protein compare
MPMX19_06510 +0.5 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05882 +0.5 1.7 hypothetical protein compare
MPMX19_00212 +0.5 4.2 Nitrogen fixation regulation protein FixK compare
MPMX19_03095 +0.5 1.2 hypothetical protein compare
MPMX19_06890 +0.5 2.4 hypothetical protein compare
MPMX19_05483 +0.5 2.3 hypothetical protein compare
MPMX19_02787 +0.5 2.2 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_00244 +0.5 2.1 hypothetical protein compare
MPMX19_05528 +0.5 1.9 hypothetical protein compare
MPMX19_04302 +0.5 2.8 hypothetical protein compare
MPMX19_03465 +0.5 1.9 Acetyl-CoA acetyltransferase compare
MPMX19_05733 +0.5 0.7 Biopolymer transport protein ExbD compare
MPMX19_05990 +0.5 2.0 hypothetical protein compare
MPMX19_00046 +0.5 1.3 hypothetical protein compare
MPMX19_05575 +0.5 1.5 hypothetical protein compare
MPMX19_02514 +0.5 0.7 hypothetical protein compare
MPMX19_04703 +0.5 3.0 L-serine dehydratase TdcG compare
MPMX19_06096 +0.5 2.8 hypothetical protein compare
MPMX19_04644 +0.5 1.3 hypothetical protein compare
MPMX19_00746 +0.5 2.1 hypothetical protein compare
MPMX19_02937 +0.5 0.8 hypothetical protein compare
MPMX19_01005 +0.4 2.2 hypothetical protein compare
MPMX19_00956 +0.4 1.4 hypothetical protein compare
MPMX19_04682 +0.4 1.1 hypothetical protein compare
MPMX19_01101 +0.4 1.2 hypothetical protein compare
MPMX19_02795 +0.4 2.6 Homoaconitase large subunit compare
MPMX19_01893 +0.4 1.7 Glutamine-dependent NAD(+) synthetase compare
MPMX19_03871 +0.4 1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03297 +0.4 1.7 hypothetical protein compare
MPMX19_05346 +0.4 2.0 hypothetical protein compare
MPMX19_04088 +0.4 1.5 Signal recognition particle 54 kDa protein compare
MPMX19_04825 +0.4 1.0 hypothetical protein compare
MPMX19_04677 +0.4 2.0 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_03081 +0.4 1.0 Protein FecR compare
MPMX19_04501 +0.4 1.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01653 +0.4 2.3 Serine acetyltransferase compare
MPMX19_03816 +0.4 1.2 hypothetical protein compare
MPMX19_04280 +0.4 1.3 hypothetical protein compare
MPMX19_03396 +0.4 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00820 +0.4 2.8 Multicopper oxidase MmcO compare
MPMX19_01480 +0.4 2.1 hypothetical protein compare
MPMX19_00334 +0.4 1.3 hypothetical protein compare
MPMX19_02918 +0.4 2.1 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
MPMX19_00957 +0.4 2.2 Phosphoribosyl-ATP pyrophosphatase compare
MPMX19_03371 +0.4 1.5 hypothetical protein compare
MPMX19_04108 +0.4 3.0 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
MPMX19_00689 +0.4 1.0 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_04081 +0.4 1.1 hypothetical protein compare
MPMX19_05578 +0.4 2.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02092 +0.4 1.3 hypothetical protein compare
MPMX19_03085 +0.4 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_01067 +0.4 0.9 hypothetical protein compare
MPMX19_02769 +0.4 1.8 Ribokinase compare
MPMX19_01426 +0.4 1.0 hypothetical protein compare
MPMX19_01811 +0.4 1.2 hypothetical protein compare
MPMX19_02424 +0.4 1.3 hypothetical protein compare
MPMX19_02613 +0.4 0.9 hypothetical protein compare
MPMX19_03075 +0.4 2.3 hypothetical protein compare
MPMX19_05521 +0.4 1.2 Nitrogen regulatory protein P-II 2 compare
MPMX19_03543 +0.4 2.0 putative ABC transporter ATP-binding protein YejF compare
MPMX19_05040 +0.4 1.8 hypothetical protein compare
MPMX19_02604 +0.4 2.1 Mycothiol acetyltransferase compare
MPMX19_03694 +0.4 0.9 hypothetical protein compare
MPMX19_04788 +0.4 2.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_03250 +0.4 1.8 Glycine cleavage system transcriptional activator compare
MPMX19_00370 +0.4 1.3 hypothetical protein compare
MPMX19_03400 +0.4 2.1 hypothetical protein compare
MPMX19_06419 +0.4 1.0 IS110 family transposase ISHne3 compare
MPMX19_04670 +0.4 1.8 hypothetical protein compare
MPMX19_05190 +0.4 1.5 putative malonic semialdehyde reductase RutE compare
MPMX19_04741 +0.4 1.9 Formyltransferase/hydrolase complex Fhc subunit B compare
MPMX19_06464 +0.4 1.3 Tryptophan synthase beta chain compare
MPMX19_00758 +0.4 2.2 putative protein YqeY compare
MPMX19_05067 +0.4 1.4 hypothetical protein compare
MPMX19_04286 +0.4 2.1 hypothetical protein compare
MPMX19_00295 +0.4 1.9 Transcriptional regulatory protein QseB compare
MPMX19_03462 +0.4 1.2 Acetate CoA-transferase subunit alpha compare
MPMX19_05738 +0.4 2.3 hypothetical protein compare
MPMX19_04633 +0.4 1.4 hypothetical protein compare
MPMX19_03916 +0.4 1.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_02063 +0.4 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04492 +0.4 1.1 hypothetical protein compare
MPMX19_05229 +0.4 1.6 ECF RNA polymerase sigma factor RpoE compare
MPMX19_05622 +0.4 2.8 Sensor histidine kinase RegB compare
MPMX19_05548 +0.4 1.5 D-methionine transport system permease protein MetI compare
MPMX19_02055 +0.4 1.2 Hypoxic response protein 1 compare
MPMX19_05036 +0.4 2.1 hypothetical protein compare
MPMX19_04271 +0.4 1.1 Response regulator rcp1 compare
MPMX19_00209 +0.4 2.3 Cbb3-type cytochrome c oxidase subunit FixP compare
MPMX19_05996 +0.4 1.5 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_00500 +0.4 1.7 hypothetical protein compare
MPMX19_05621 +0.4 2.2 ABC transporter ATP-binding protein NatA compare
MPMX19_04693 +0.4 1.8 hypothetical protein compare
MPMX19_04145 +0.4 1.0 hypothetical protein compare
MPMX19_06521 +0.4 2.0 Putative aliphatic sulfonates-binding protein compare
MPMX19_00942 +0.4 1.3 hypothetical protein compare
MPMX19_05791 +0.4 2.4 HTH-type transcriptional repressor RspR compare
MPMX19_06062 +0.4 2.3 hypothetical protein compare
MPMX19_06964 +0.4 1.3 HTH-type transcriptional regulator KipR compare
MPMX19_03377 +0.4 2.2 D-allose transport system permease protein AlsC compare
MPMX19_06326 +0.4 1.2 hypothetical protein compare
MPMX19_02633 +0.4 2.4 Chaperone protein DnaJ compare
MPMX19_04257 +0.4 2.6 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase compare
MPMX19_02188 +0.4 1.9 hypothetical protein compare
MPMX19_04767 +0.4 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03112 +0.4 1.8 Ribonuclease BN compare
MPMX19_06843 +0.4 1.2 hypothetical protein compare
MPMX19_00963 +0.4 2.1 Transcriptional regulatory protein OmpR compare
MPMX19_04110 +0.4 1.4 Bifunctional protein PaaZ compare
MPMX19_02524 +0.4 2.8 tRNA pseudouridine synthase B compare
MPMX19_06260 +0.4 1.7 hypothetical protein compare
MPMX19_00008 +0.4 1.0 hypothetical protein compare
MPMX19_01079 +0.4 1.5 hypothetical protein compare
MPMX19_03149 +0.4 1.9 hypothetical protein compare
MPMX19_01487 +0.4 1.2 hypothetical protein compare
MPMX19_04990 +0.4 1.0 Hydrogen peroxide-inducible genes activator compare
MPMX19_04557 +0.4 1.6 Na(+)/H(+) antiporter NhaA compare
MPMX19_05189 +0.4 1.3 hypothetical protein compare
MPMX19_03672 +0.4 1.6 hypothetical protein compare
MPMX19_02761 +0.4 2.3 hypothetical protein compare
MPMX19_00875 +0.4 1.2 hypothetical protein compare
MPMX19_05773 +0.4 1.0 Putative 1,2-phenylacetyl-CoA epoxidase, subunit D compare
MPMX19_05901 +0.4 1.0 Motility protein B compare
MPMX19_00718 +0.4 0.9 hypothetical protein compare
MPMX19_03439 +0.4 0.8 hypothetical protein compare
MPMX19_04323 +0.4 1.1 Segregation and condensation protein B compare
MPMX19_03900 +0.4 1.6 Hca operon transcriptional activator HcaR compare
MPMX19_05023 +0.4 0.8 hypothetical protein compare
MPMX19_03425 +0.4 0.9 hypothetical protein compare
MPMX19_02984 +0.4 2.1 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_04781 +0.4 1.4 hypothetical protein compare
MPMX19_05038 +0.3 1.5 ATP synthase epsilon chain compare
MPMX19_04909 +0.3 1.4 hypothetical protein compare
MPMX19_02747 +0.3 2.2 hypothetical protein compare
MPMX19_06355 +0.3 1.5 hypothetical protein compare
MPMX19_06853 +0.3 1.5 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_01153 +0.3 1.2 hypothetical protein compare
MPMX19_04063 +0.3 2.1 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms