Experiment set1S458 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus

200 most important genes:

  gene name fitness t score description  
GFF5158 -4.6 -7.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF2515 -4.2 -2.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF3265 -4.1 -2.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF5324 -4.0 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF3089 -4.0 -2.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5267 -3.7 -3.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3889 -3.7 -2.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3888 -3.6 -3.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF239 -3.6 -2.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6512 -3.5 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF966 -3.5 -6.3 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF408 -3.5 -2.4 Two-component system response regulator OmpR compare
GFF6022 -3.5 -10.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF5307 -3.5 -4.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF3890 -3.4 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF6513 -3.4 -7.1 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF5896 -3.3 -8.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF372 -3.2 -9.5 PMID: 11481431 compare
GFF5512 -3.1 -3.0 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF2847 -3.1 -3.6 histone-like nucleoid-structuring protein H-NS compare
GFF7295 -3.0 -6.0 HPr kinase/phosphorylase compare
GFF5261 -2.9 -9.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF4903 -2.9 -1.7 no description compare
GFF6878 -2.9 -16.5 hypothetical protein compare
GFF6876 -2.9 -15.0 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF944 -2.9 -3.8 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF5076 -2.9 -13.9 hypothetical protein compare
GFF5369 -2.9 -3.1 Large-conductance mechanosensitive channel compare
GFF4626 -2.8 -7.1 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF302 -2.8 -1.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2627 -2.7 -5.4 Chorismate synthase (EC 4.2.3.5) compare
GFF6182 -2.6 -4.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF489 -2.6 -5.4 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3600 -2.6 -1.8 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF409 -2.5 -5.9 Osmolarity sensory histidine kinase EnvZ compare
GFF6360 -2.5 -2.0 FIG00432660: hypothetical protein compare
GFF967 -2.5 -14.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5118 -2.5 -3.3 gluconolactonase family protein compare
GFF3838 -2.4 -13.9 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF6465 -2.4 -3.2 hypothetical protein compare
GFF2578 -2.4 -9.4 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF5513 -2.4 -3.5 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF3928 -2.3 -2.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF5523 -2.3 -1.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF6042 -2.3 -4.3 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF575 -2.3 -9.8 Tol-Pal system protein TolQ compare
GFF6857 -2.3 -3.4 hypothetical protein compare
GFF291 -2.2 -8.9 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF5065 -2.2 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF6116 -2.2 -3.9 MlrC compare
GFF1535 -2.2 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF7043 -2.2 -2.2 Putative transmembrane protein compare
GFF4625 -2.1 -3.7 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF3941 -2.1 -2.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5509 -2.1 -4.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5666 -2.1 -3.8 Prevent host death protein, Phd antitoxin compare
GFF576 -2.0 -3.9 Tol biopolymer transport system, TolR protein compare
GFF255 -2.0 -2.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF5057 -2.0 -14.7 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF968 -2.0 -3.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF6875 -2.0 -6.2 hypothetical protein compare
GFF292 -1.9 -12.6 Tol-Pal system beta propeller repeat protein TolB compare
GFF506 -1.9 -2.2 hypothetical protein compare
GFF3264 -1.9 -4.8 Methionine biosynthesis protein MetW compare
GFF1324 -1.8 -3.0 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF3790 -1.8 -5.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF5325 -1.8 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF339 -1.8 -3.4 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF2730 -1.8 -3.7 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF6378 -1.8 -2.1 Nicotinamidase (EC 3.5.1.19) compare
GFF2677 -1.8 -7.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF5605 -1.7 -4.4 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF6570 -1.7 -2.8 hypothetical protein compare
GFF6869 -1.7 -5.7 no description compare
GFF5603 -1.7 -9.1 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF577 -1.7 -3.6 TolA protein compare
GFF5927 -1.7 -1.5 3-oxoacyl-[ACP] synthase compare
GFF6036 -1.7 -6.5 DNA translocase FtsK compare
GFF1756 -1.7 -1.4 hypothetical protein compare
GFF5604 -1.6 -7.5 D-xylose ABC transporter, permease protein XylH compare
GFF2734 -1.6 -6.6 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF1106 -1.5 -3.0 UvrD/REP helicase compare
GFF3957 -1.5 -1.9 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF6249 -1.5 -8.0 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF4437 -1.5 -5.5 Low-complexity acidic protein, XCC2875 type compare
GFF6186 -1.5 -5.7 no description compare
GFF371 -1.5 -2.1 RNA-binding protein YhbY compare
GFF2273 -1.5 -4.5 Transcriptional regulator, AcrR family compare
GFF3651 -1.5 -1.6 PTS system, IIA component compare
GFF341 -1.5 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF5877 -1.5 -2.9 Probable proline rich signal peptide protein compare
GFF6250 -1.4 -9.1 Glutamate--cysteine ligase-like protein YbdK compare
GFF4298 -1.4 -1.4 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
GFF1051 -1.4 -1.7 no description compare
GFF4447 -1.4 -7.0 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF5279 -1.4 -3.6 Fructokinase (EC 2.7.1.4) compare
GFF4640 -1.4 -11.1 hypothetical protein compare
GFF1105 -1.4 -2.5 Helicase compare
GFF1573 -1.4 -1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF2073 -1.4 -4.0 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF784 -1.4 -1.5 KEGG: RNA polymerase sigma-70 factor, ECF subfamily compare
GFF5156 -1.4 -11.5 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF23 -1.4 -2.2 no description compare
GFF6700 -1.4 -3.0 Single-stranded-DNA-specific exonuclease RecJ compare
GFF4454 -1.4 -4.5 Exoribonuclease II (EC 3.1.13.1) compare
GFF6197 -1.4 -2.2 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF2182 -1.3 -7.6 Inner membrane component of TAM transport system compare
GFF5491 -1.3 -4.8 Peptide deformylase (EC 3.5.1.88) compare
GFF2203 -1.3 -3.3 no description compare
GFF6610 -1.3 -2.3 putative lipoprotein compare
GFF168 -1.3 -5.2 MCP methyltransferase, CheR-type compare
GFF6591 -1.3 -3.5 Transcriptional regulator, GntR family compare
GFF5534 -1.3 -3.3 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF1047 -1.3 -7.4 hypothetical protein compare
GFF7282 -1.3 -2.4 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
GFF270 -1.2 -8.6 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF6168 -1.2 -1.5 Na(+) H(+) antiporter subunit G compare
GFF2838 -1.2 -1.8 hypothetical protein compare
GFF2398 -1.2 -1.6 Uncharacterized MFS-type transporter compare
GFF6246 -1.2 -4.3 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF5040 -1.2 -8.1 3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59) compare
GFF431 -1.2 -2.1 Esterase/lipase compare
GFF15 -1.2 -1.4 no description compare
GFF4285 -1.2 -2.0 Tricarboxylate transport protein TctC compare
GFF6872 -1.2 -6.5 FIG00904907: hypothetical protein compare
GFF6989 -1.2 -1.6 Flagellar basal-body rod modification protein FlgD compare
GFF2408 -1.2 -2.1 FIG00976241: hypothetical protein compare
GFF219 -1.2 -2.8 GTP-binding protein TypA/BipA compare
GFF2183 -1.2 -6.8 Outer membrane component of TAM transport system compare
GFF2613 -1.1 -3.3 no description compare
GFF1966 -1.1 -6.6 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF6294 -1.1 -2.9 Cell division protein compare
GFF7217 -1.1 -1.7 hypothetical protein compare
GFF7261 -1.1 -0.8 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) compare
GFF1529 -1.1 -1.2 Transcriptional regulator, AcrR family compare
GFF970 -1.1 -5.7 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF2698 -1.1 -1.9 Transcriptional regulator, LysR family compare
GFF1468 -1.1 -3.2 Transcriptional regulator, GntR family compare
GFF502 -1.0 -1.5 Hydrolase compare
GFF2164 -1.0 -4.7 Transcriptional regulator, IclR family compare
GFF3480 -1.0 -2.6 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF5097 -1.0 -1.4 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10) compare
GFF2173 -1.0 -1.2 no description compare
GFF273 -1.0 -5.3 Transcriptional regulator, Xre family compare
GFF2239 -1.0 -0.9 no description compare
GFF4462 -1.0 -1.4 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF2582 -1.0 -4.2 Uncharacterized DUF3460-containg protein Bmul_0854 compare
GFF3153 -1.0 -2.1 Two-component transcriptional response regulator, LuxR family compare
GFF1751 -1.0 -2.1 Rhodanese-related sulfurtransferase, 4 domains compare
GFF2971 -1.0 -1.7 Transcriptional regulator, LysR family compare
GFF4270 -1.0 -1.6 Transcriptional regulator, AcrR family compare
GFF254 -1.0 -6.8 N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2 compare
GFF3254 -1.0 -7.3 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF1831 -1.0 -1.4 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF2570 -1.0 -2.2 Rhodanese-related sulfurtransferase YibN compare
GFF6638 -1.0 -3.9 no description compare
GFF3976 -1.0 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF3510 -1.0 -1.3 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF290 -0.9 -4.7 Cell division coordinator CpoB compare
GFF6194 -0.9 -1.8 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF4606 -0.9 -1.0 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF6087 -0.9 -5.0 Transcriptional regulator, AcrR family compare
GFF3406 -0.9 -5.8 Benzoyl-CoA oxygenase component A compare
GFF7321 -0.9 -1.5 Sensor histidine kinase GlrK compare
GFF1951 -0.9 -1.6 no description compare
GFF5266 -0.9 -5.1 Transaldolase (EC 2.2.1.2) compare
GFF1668 -0.9 -1.5 BUG/TctC family periplasmic protein compare
GFF5424 -0.9 -0.8 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF269 -0.9 -3.0 2-methylaconitate isomerase compare
GFF5876 -0.9 -4.0 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF6870 -0.9 -5.6 FIG00904791: hypothetical protein compare
GFF3320 -0.9 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF6574 -0.9 -2.8 Conjugative transfer protein TrbL compare
GFF3854 -0.9 -1.8 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF7380 -0.8 -4.6 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF3133 -0.8 -1.9 hypothetical protein compare
GFF6366 -0.8 -2.1 T6SS component TssG (ImpH/VasB) compare
GFF5140 -0.8 -2.1 no description compare
GFF5042 -0.8 -2.2 Transcriptional regulator, LysR family compare
GFF463 -0.8 -2.3 Malonyl-CoA decarboxylase (EC 4.1.1.9) compare
GFF5091 -0.8 -1.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
GFF487 -0.8 -5.0 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF6871 -0.8 -5.9 FIG00905613: hypothetical protein compare
GFF6008 -0.8 -1.6 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2609 -0.8 -1.7 Fructose ABC transporter, ATP-binding component FrcA compare
GFF3870 -0.8 -3.5 Ribonuclease III (EC 3.1.26.3) compare
GFF5213 -0.8 -2.3 hypothetical protein compare
GFF3425 -0.8 -1.6 no description compare
GFF799 -0.8 -0.7 Rrf2 family transcriptional regulator, group III compare
GFF4024 -0.8 -1.6 Transcriptional regulator, MerR family compare
GFF2688 -0.8 -1.2 Glutamine ABC transporter, substrate-binding protein GlnH compare
GFF6984 -0.8 -2.2 RNA polymerase sigma factor for flagellar operon compare
GFF3723 -0.8 -4.9 Cytochrome c5 compare
GFF5246 -0.8 -4.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF6982 -0.8 -1.5 hypothetical protein compare
GFF2926 -0.8 -2.2 FIG00349048: hypothetical protein compare
GFF6639 -0.8 -3.5 no description compare
GFF3653 -0.8 -5.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1159 -0.8 -4.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3900 -0.8 -3.4 Transcriptional regulator, GntR family compare


Specific Phenotypes

For 1 genes in this experiment

For vitamin Supernatant; Cryptococcus in Variovorax sp. SCN45

For vitamin Supernatant; Cryptococcus across organisms