Experiment set1S457 for Variovorax sp. SCN45

Compare to:

M9 with Supernatant from Cyptococcus

200 most important genes:

  gene name fitness t score description  
GFF3265 -4.2 -2.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF5267 -4.1 -2.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF5158 -3.8 -8.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF944 -3.8 -3.7 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF1756 -3.8 -2.6 hypothetical protein compare
GFF2515 -3.7 -3.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF6512 -3.6 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF5261 -3.5 -9.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF3089 -3.5 -3.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5512 -3.4 -2.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF3890 -3.4 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF5896 -3.4 -8.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF255 -3.3 -3.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF2627 -3.1 -5.4 Chorismate synthase (EC 4.2.3.5) compare
GFF6513 -3.1 -7.0 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3888 -3.0 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF966 -3.0 -8.1 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF5324 -2.9 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF5307 -2.9 -5.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF6182 -2.8 -4.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF5118 -2.8 -4.6 gluconolactonase family protein compare
GFF3889 -2.8 -3.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF302 -2.8 -1.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF967 -2.7 -15.3 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5325 -2.7 -2.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF6042 -2.7 -5.0 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF3838 -2.6 -16.2 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF5513 -2.6 -3.5 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF239 -2.6 -2.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF1324 -2.5 -2.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF577 -2.5 -4.2 TolA protein compare
GFF3600 -2.4 -2.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF5509 -2.4 -3.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF6700 -2.3 -4.4 Single-stranded-DNA-specific exonuclease RecJ compare
GFF6475 -2.3 -3.3 hypothetical protein compare
GFF409 -2.3 -5.8 Osmolarity sensory histidine kinase EnvZ compare
GFF3941 -2.2 -2.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF7295 -2.2 -6.4 HPr kinase/phosphorylase compare
GFF5605 -2.2 -6.9 D-xylose ABC transporter, ATP-binding protein XylG compare
GFF968 -2.1 -3.1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5604 -2.1 -8.9 D-xylose ABC transporter, permease protein XylH compare
GFF5279 -2.1 -4.8 Fructokinase (EC 2.7.1.4) compare
GFF5523 -2.1 -2.0 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1908 -2.0 -2.1 Short-chain dehydrogenases of various substrate specificities compare
GFF5065 -2.0 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF489 -2.0 -4.9 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF1106 -1.9 -3.4 UvrD/REP helicase compare
GFF6022 -1.9 -8.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3264 -1.8 -5.3 Methionine biosynthesis protein MetW compare
GFF5603 -1.8 -10.2 D-xylose ABC transporter, substrate-binding protein XylF compare
GFF5666 -1.8 -4.3 Prevent host death protein, Phd antitoxin compare
GFF408 -1.8 -2.0 Two-component system response regulator OmpR compare
GFF168 -1.8 -7.3 MCP methyltransferase, CheR-type compare
GFF6876 -1.8 -11.5 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF2730 -1.8 -3.2 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF2570 -1.7 -3.3 Rhodanese-related sulfurtransferase YibN compare
GFF1475 -1.7 -1.4 no description compare
GFF339 -1.6 -3.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF2578 -1.6 -7.6 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF3651 -1.6 -1.8 PTS system, IIA component compare
GFF1105 -1.6 -2.6 Helicase compare
GFF3254 -1.6 -11.8 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF5057 -1.6 -12.4 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF576 -1.5 -3.4 Tol biopolymer transport system, TolR protein compare
GFF3790 -1.5 -3.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF575 -1.5 -8.2 Tol-Pal system protein TolQ compare
GFF4447 -1.5 -7.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF291 -1.5 -6.5 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF6694 -1.5 -3.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF5815 -1.5 -2.3 Uncharacterized MFS-type transporter compare
GFF3166 -1.5 -2.1 Transcriptional regulator, IclR family compare
GFF5317 -1.5 -1.7 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF317 -1.4 -1.8 Acyl carrier protein compare
GFF6250 -1.4 -9.1 Glutamate--cysteine ligase-like protein YbdK compare
GFF6878 -1.4 -9.6 hypothetical protein compare
GFF680 -1.4 -2.0 RecA/RadA recombinase compare
GFF946 -1.4 -2.7 Iron-sulfur cluster regulator IscR compare
GFF4482 -1.3 -3.7 Transcriptional regulator MraZ compare
GFF5491 -1.3 -5.0 Peptide deformylase (EC 3.5.1.88) compare
GFF2273 -1.3 -3.3 Transcriptional regulator, AcrR family compare
GFF2734 -1.3 -5.6 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF2847 -1.3 -1.3 histone-like nucleoid-structuring protein H-NS compare
GFF1770 -1.2 -3.2 cytidine/deoxycytidylate deaminase family protein compare
GFF5076 -1.2 -8.2 hypothetical protein compare
GFF5030 -1.2 -1.4 no description compare
GFF292 -1.2 -9.5 Tol-Pal system beta propeller repeat protein TolB compare
GFF4352 -1.2 -1.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF4364 -1.2 -2.7 Transcriptional regulator, LysR family compare
GFF5156 -1.2 -10.2 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF2164 -1.2 -6.2 Transcriptional regulator, IclR family compare
GFF1529 -1.2 -1.5 Transcriptional regulator, AcrR family compare
GFF570 -1.2 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
GFF6875 -1.2 -5.7 hypothetical protein compare
GFF3841 -1.2 -5.6 Uncharacterized protein EC-HemX compare
GFF5424 -1.2 -1.3 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF5876 -1.1 -5.8 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF4847 -1.1 -1.9 Conjugative transfer protein TrbD compare
GFF2481 -1.1 -1.1 Urease accessory protein UreF compare
GFF6161 -1.1 -1.6 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF2973 -1.1 -1.2 Transcriptional regulator compare
GFF3152 -1.1 -2.3 hypothetical protein compare
GFF3900 -1.1 -4.9 Transcriptional regulator, GntR family compare
GFF2677 -1.1 -5.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF487 -1.1 -6.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF20 -1.0 -1.2 hypothetical protein compare
GFF2173 -1.0 -1.5 no description compare
GFF4437 -1.0 -4.8 Low-complexity acidic protein, XCC2875 type compare
GFF2306 -1.0 -5.6 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF2838 -1.0 -1.9 hypothetical protein compare
GFF6249 -1.0 -5.4 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF372 -1.0 -4.0 PMID: 11481431 compare
GFF4557 -1.0 -3.9 Dihydroorotase (EC 3.5.2.3) compare
GFF2609 -1.0 -2.8 Fructose ABC transporter, ATP-binding component FrcA compare
GFF1683 -1.0 -1.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3360 -1.0 -1.7 no description compare
GFF1600 -1.0 -1.9 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) compare
GFF1742 -1.0 -1.0 hypothetical protein compare
GFF6440 -1.0 -1.9 Molybdate-binding domain of ModE compare
GFF2405 -1.0 -2.5 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) compare
GFF2844 -1.0 -5.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF1984 -1.0 -1.5 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF6742 -1.0 -1.9 NAD(P)H-flavin oxidoreductase compare
GFF2183 -0.9 -6.6 Outer membrane component of TAM transport system compare
GFF273 -0.9 -5.0 Transcriptional regulator, Xre family compare
GFF5484 -0.9 -3.5 Protein translocase subunit YajC compare
GFF2302 -0.9 -5.2 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF4625 -0.9 -3.9 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF7231 -0.9 -0.9 no description compare
GFF2182 -0.9 -6.1 Inner membrane component of TAM transport system compare
GFF3986 -0.9 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF270 -0.9 -7.1 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF2819 -0.9 -2.4 Phosphoenolpyruvate synthase regulatory protein compare
GFF7178 -0.9 -1.8 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF3403 -0.9 -4.8 Benzoate catabolism regulator with shikimate kinase domain compare
GFF219 -0.9 -2.7 GTP-binding protein TypA/BipA compare
GFF3206 -0.9 -1.3 no description compare
GFF341 -0.9 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF6087 -0.9 -4.2 Transcriptional regulator, AcrR family compare
GFF1625 -0.9 -1.0 Transcriptional regulator, LysR family compare
GFF970 -0.9 -5.8 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1966 -0.8 -5.7 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF3425 -0.8 -1.7 no description compare
GFF4867 -0.8 -2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF6293 -0.8 -3.0 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF5981 -0.8 -1.2 COGs COG3558 compare
GFF5266 -0.8 -5.3 Transaldolase (EC 2.2.1.2) compare
GFF5877 -0.8 -2.5 Probable proline rich signal peptide protein compare
GFF169 -0.8 -5.6 Protein-glutamate methylesterase (EC 3.1.1.61) compare
GFF3050 -0.8 -1.4 Lactam utilization protein LamB compare
GFF3052 -0.8 -2.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
GFF4606 -0.8 -1.0 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF6591 -0.8 -3.7 Transcriptional regulator, GntR family compare
GFF423 -0.8 -1.5 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
GFF2475 -0.8 -1.3 no description compare
GFF7105 -0.8 -1.8 Homoprotocatechuate degradative operon repressor compare
GFF269 -0.8 -2.8 2-methylaconitate isomerase compare
GFF2304 -0.8 -5.1 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF7336 -0.8 -2.2 Alkanesulfonate utilization operon LysR-family regulator Cbl compare
GFF733 -0.8 -0.9 no description compare
GFF6465 -0.8 -1.5 hypothetical protein compare
GFF7279 -0.8 -1.2 no description compare
GFF5922 -0.8 -2.4 T6SS forkhead associated domain protein ImpI/VasC compare
GFF2297 -0.8 -5.9 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF6959 -0.8 -1.1 Putative analog of CcoH, COG3198 compare
GFF6638 -0.8 -4.6 no description compare
GFF290 -0.8 -4.8 Cell division coordinator CpoB compare
GFF3952 -0.8 -2.0 LSU ribosomal protein L19p compare
GFF1951 -0.8 -1.4 no description compare
GFF3576 -0.8 -1.4 no description compare
GFF4181 -0.7 -1.8 hypothetical protein compare
GFF5310 -0.7 -5.2 Cytochrome c4 compare
GFF2398 -0.7 -1.5 Uncharacterized MFS-type transporter compare
GFF6469 -0.7 -3.7 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter compare
GFF4490 -0.7 -3.0 Site-specific tyrosine recombinase XerC compare
GFF5090 -0.7 -1.2 Homoprotocatechuate degradative operon repressor compare
GFF2344 -0.7 -2.1 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF2637 -0.7 -1.1 no description compare
GFF488 -0.7 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF5328 -0.7 -2.4 FIG00537720: hypothetical protein compare
GFF4610 -0.7 -4.7 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) compare
GFF2300 -0.7 -4.8 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF2015 -0.7 -2.8 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
GFF3547 -0.7 -2.5 no description compare
GFF3369 -0.7 -1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF6206 -0.7 -1.3 Transcriptional regulator, GntR family compare
GFF6036 -0.7 -3.5 DNA translocase FtsK compare
GFF1594 -0.7 -2.2 Antitoxin DinJ (binds YafQ toxin) compare
GFF4112 -0.7 -0.8 Rhodanese-related sulfurtransferase, 4 domains compare
GFF497 -0.7 -3.4 Phytoene synthase (EC 2.5.1.32) compare
GFF5153 -0.7 -4.3 Putative ROK-family transcriptional regulator compare
GFF5246 -0.7 -4.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF5594 -0.7 -3.6 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
GFF6950 -0.7 -1.5 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF2613 -0.7 -2.2 no description compare
GFF4147 -0.7 -1.1 hypothetical protein compare
GFF6006 -0.7 -1.4 BUG/TctC family periplasmic protein compare
GFF3653 -0.7 -4.5 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF2400 -0.7 -2.2 no description compare
GFF3401 -0.7 -0.6 P-hydroxylaminobenzoate lyase compare
GFF5333 -0.7 -1.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin Supernatant; Cryptococcus across organisms