Experiment set1S455 for Phocaeicola dorei CL03T12C01

Compare to:

(+)-Arabinogalactan carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21065 -8.4 -8.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS11830 -7.3 -5.1 ATP phosphoribosyltransferase compare
ABI39_RS02315 -7.0 -6.8 IMP dehydrogenase compare
ABI39_RS16910 -6.9 -12.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS07005 -6.6 -6.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS10495 -6.6 -10.0 prephenate dehydrogenase compare
ABI39_RS10510 -6.5 -11.3 prephenate dehydratase compare
ABI39_RS02980 -6.5 -7.2 N-acetyltransferase compare
ABI39_RS07790 -6.5 -7.2 M20 family metallo-hydrolase compare
ABI39_RS19925 -6.4 -8.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS04245 -6.2 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS11835 -6.1 -8.3 histidinol dehydrogenase compare
ABI39_RS21060 -6.0 -9.9 anthranilate phosphoribosyltransferase compare
ABI39_RS11840 -6.0 -7.1 histidinol-phosphate transaminase compare
ABI39_RS02880 -5.9 -9.4 glutamate 5-kinase compare
ABI39_RS04685 -5.7 -5.5 acetylglutamate kinase compare
ABI39_RS04695 -5.7 -6.3 shikimate kinase compare
ABI39_RS07095 -5.6 -16.7 argininosuccinate lyase compare
ABI39_RS04795 -5.6 -3.7 M28 family peptidase compare
ABI39_RS11845 -5.6 -10.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS21075 -5.5 -6.5 tryptophan synthase subunit alpha compare
ABI39_RS11650 -5.5 -11.7 galactokinase compare
ABI39_RS02875 -5.5 -11.0 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS21045 -5.5 -6.1 tryptophan synthase subunit beta compare
ABI39_RS20070 -5.4 -6.4 UDP-glucose 4-epimerase GalE compare
ABI39_RS02970 -5.3 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10435 -5.3 -11.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10505 -5.1 -14.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS05660 -5.1 -11.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS16905 -5.0 -12.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS19930 -4.9 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS12675 -4.9 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS19935 -4.9 -9.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS02870 -4.9 -9.8 acetylornithine carbamoyltransferase compare
ABI39_RS12645 -4.9 -15.1 chorismate synthase compare
ABI39_RS09685 -4.8 -3.3 hypothetical protein compare
ABI39_RS10500 -4.8 -6.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS17140 -4.8 -3.3 AAA family ATPase compare
ABI39_RS06055 -4.7 -10.6 phosphoribosylamine--glycine ligase compare
ABI39_RS12665 -4.6 -9.9 shikimate dehydrogenase compare
ABI39_RS18330 -4.6 -13.0 PD40 domain-containing protein compare
ABI39_RS02975 -4.6 -10.1 argininosuccinate synthase compare
ABI39_RS01360 -4.5 -9.7 hypothetical protein compare
ABI39_RS00475 -4.5 -6.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS12770 -4.5 -3.1 hypothetical protein compare
ABI39_RS19985 -4.5 -3.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10110 -4.5 -13.5 S9 family peptidase compare
ABI39_RS02960 -4.4 -13.0 pyrroline-5-carboxylate reductase compare
ABI39_RS17950 -4.4 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS18745 -4.4 -7.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS06675 -4.3 -8.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS00205 -4.3 -4.2 phosphoglucosamine mutase compare
ABI39_RS12720 -4.3 -15.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS17175 -4.3 -7.1 tetratricopeptide repeat protein compare
ABI39_RS12715 -4.3 -12.9 dihydroxy-acid dehydratase compare
ABI39_RS00770 -4.2 -15.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS19950 -4.2 -2.9 diaminopimelate decarboxylase compare
ABI39_RS10430 -4.2 -12.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS08035 -4.2 -2.9 adenylosuccinate lyase compare
ABI39_RS21050 -4.1 -7.6 anthranilate synthase component I family protein compare
ABI39_RS10260 -4.1 -11.3 adenylosuccinate synthase compare
ABI39_RS17160 -4.1 -2.8 VWA domain-containing protein compare
ABI39_RS06670 -4.0 -13.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS10215 -4.0 -13.0 3-isopropylmalate dehydrogenase compare
ABI39_RS10200 -4.0 -15.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS14560 -4.0 -4.9 aspartate 1-decarboxylase compare
ABI39_RS10440 -4.0 -10.1 threonine synthase compare
ABI39_RS06995 -3.9 -7.7 tetratricopeptide repeat protein compare
ABI39_RS00405 -3.8 -19.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS08195 -3.8 -6.1 hypothetical protein compare
ABI39_RS10195 -3.8 -7.8 2-isopropylmalate synthase compare
ABI39_RS12735 -3.8 -9.6 ketol-acid reductoisomerase compare
ABI39_RS11655 -3.8 -3.7 MFS transporter compare
ABI39_RS10205 -3.7 -6.9 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02755 -3.6 -4.3 glycosyltransferase compare
ABI39_RS04700 -3.5 -2.4 type I DNA topoisomerase compare
ABI39_RS17170 -3.5 -4.2 protein BatD compare
ABI39_RS08305 -3.5 -9.5 DUF4831 family protein compare
ABI39_RS13180 -3.5 -6.6 FAD:protein FMN transferase compare
ABI39_RS11670 -3.3 -3.2 molecular chaperone DnaJ compare
ABI39_RS20105 -3.3 -10.4 Fe-S cluster domain-containing protein compare
ABI39_RS19385 -3.3 -4.1 hypothetical protein compare
ABI39_RS02140 -3.3 -3.3 TetR/AcrR family transcriptional regulator compare
ABI39_RS04690 -3.2 -9.3 biosynthetic arginine decarboxylase compare
ABI39_RS06010 -3.2 -10.2 polysaccharide deacetylase family protein compare
ABI39_RS05175 -3.1 -5.6 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS15400 -3.0 -8.2 TraR/DksA C4-type zinc finger protein compare
ABI39_RS16695 -2.9 -13.3 carbon-nitrogen hydrolase compare
ABI39_RS15410 -2.9 -6.2 DUF4296 domain-containing protein compare
ABI39_RS18910 -2.9 -2.2 preprotein translocase subunit YajC compare
ABI39_RS06380 -2.9 -6.8 GH3 auxin-responsive promoter family protein compare
ABI39_RS15415 -2.8 -5.8 hypothetical protein compare
ABI39_RS17640 -2.8 -5.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS20090 -2.8 -10.5 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS21350 -2.7 -1.9 aspartate--ammonia ligase compare
ABI39_RS01650 -2.7 -10.0 methylmalonyl-CoA mutase small subunit compare
ABI39_RS09245 -2.7 -16.4 cardiolipin synthase compare
ABI39_RS20095 -2.6 -12.0 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS20085 -2.6 -8.1 electron transport complex subunit E compare
ABI39_RS09575 -2.6 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS12755 -2.6 -4.2 SurA N-terminal domain-containing protein compare
ABI39_RS09845 -2.6 -2.5 (d)CMP kinase compare
ABI39_RS01655 -2.5 -8.0 methylmalonyl-CoA mutase compare
ABI39_RS20965 -2.5 -3.7 SPOR domain-containing protein compare
ABI39_RS07090 -2.5 -2.0 hypothetical protein compare
ABI39_RS01300 -2.5 -14.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS02290 -2.5 -3.6 hypothetical protein compare
ABI39_RS13000 -2.5 -6.4 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS19920 -2.5 -6.8 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS01415 -2.4 -3.3 branched-chain amino acid aminotransferase compare
ABI39_RS17420 -2.4 -10.4 serine hydroxymethyltransferase compare
ABI39_RS15380 -2.4 -4.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS04860 -2.4 -2.4 HigA family addiction module antidote protein compare
ABI39_RS20080 -2.4 -8.6 electron transport complex subunit RsxA compare
ABI39_RS04885 -2.3 -4.9 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS20100 -2.3 -10.2 electron transport complex subunit RsxC compare
ABI39_RS02965 -2.3 -10.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS17195 -2.3 -9.2 hypothetical protein compare
ABI39_RS13185 -2.3 -1.9 manganese efflux pump compare
ABI39_RS12980 -2.3 -4.0 HAD family hydrolase compare
ABI39_RS04280 -2.2 -4.5 DUF4292 domain-containing protein compare
ABI39_RS15320 -2.2 -12.4 PorT family protein compare
ABI39_RS18740 -2.1 -6.6 ATP-binding protein compare
ABI39_RS10870 -2.0 -9.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS02470 -2.0 -4.6 ATP-dependent DNA helicase RecG compare
ABI39_RS17150 -2.0 -2.6 hypothetical protein compare
ABI39_RS09195 -2.0 -3.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS19945 -2.0 -7.2 aspartate kinase compare
ABI39_RS09850 -2.0 -4.5 energy transducer TonB compare
ABI39_RS02500 -2.0 -8.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS06065 -1.9 -3.4 RNA methyltransferase compare
ABI39_RS17465 -1.9 -9.6 DUF3078 domain-containing protein compare
ABI39_RS07010 -1.9 -3.1 pyruvate kinase compare
ABI39_RS00410 -1.9 -3.3 response regulator compare
ABI39_RS12955 -1.9 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS15855 -1.9 -4.4 helix-turn-helix transcriptional regulator compare
ABI39_RS04230 -1.8 -4.2 RNA polymerase factor sigma-54 compare
ABI39_RS11660 -1.8 -6.3 galactose mutarotase compare
ABI39_RS14225 -1.8 -7.6 glycosyltransferase compare
ABI39_RS20425 -1.8 -5.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABI39_RS09770 -1.8 -8.3 DUF349 domain-containing protein compare
ABI39_RS14230 -1.8 -9.1 alpha-amylase compare
ABI39_RS12415 -1.7 -4.1 biotin/lipoyl-binding protein compare
ABI39_RS20930 -1.7 -9.4 tetratricopeptide repeat protein compare
ABI39_RS12425 -1.7 -9.7 acyl-CoA carboxylase subunit beta compare
ABI39_RS15510 -1.7 -3.9 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS02655 -1.7 -6.9 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS17315 -1.7 -10.1 alpha amylase C-terminal domain-containing protein compare
ABI39_RS15650 -1.7 -9.3 cobyrinate a,c-diamide synthase compare
ABI39_RS04505 -1.7 -6.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS00515 -1.7 -2.8 hypothetical protein compare
ABI39_RS15375 -1.6 -9.3 sugar kinase compare
ABI39_RS15265 -1.6 -3.0 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS23200 -1.6 -10.3 ATP-binding protein compare
ABI39_RS08850 -1.6 -5.7 toprim domain-containing protein compare
ABI39_RS12420 -1.6 -5.8 OadG family protein compare
ABI39_RS11140 -1.6 -1.6 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS04970 -1.6 -4.9 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS16040 -1.6 -1.3 hypothetical protein compare
ABI39_RS04950 -1.5 -2.6 DEAD/DEAH box helicase compare
ABI39_RS17205 -1.5 -2.8 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS15490 -1.5 -7.6 precorrin-2 C(20)-methyltransferase compare
ABI39_RS06235 -1.5 -8.0 UDP-galactopyranose mutase compare
ABI39_RS10210 -1.5 -3.6 2-isopropylmalate synthase compare
ABI39_RS08135 -1.5 -3.0 YicC family protein compare
ABI39_RS11630 -1.5 -3.1 L-ribulose-5-phosphate 4-epimerase compare
ABI39_RS20355 -1.4 -10.5 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS09855 -1.4 -4.3 polyprenyl synthetase family protein compare
ABI39_RS09515 -1.4 -3.9 nucleoside deaminase compare
ABI39_RS12430 -1.4 -1.3 methylmalonyl-CoA epimerase compare
ABI39_RS08055 -1.4 -7.5 zeta toxin family protein compare
ABI39_RS06250 -1.4 -9.0 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS12150 -1.4 -3.0 hotdog fold thioesterase compare
ABI39_RS12945 -1.4 -4.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS06050 -1.3 -3.9 hypothetical protein compare
ABI39_RS01595 -1.3 -5.7 dTDP-glucose 4,6-dehydratase compare
ABI39_RS14250 -1.3 -7.1 8-amino-7-oxononanoate synthase compare
ABI39_RS14715 -1.3 -4.4 RidA family protein compare
ABI39_RS14240 -1.3 -4.2 biotin synthase BioB compare
ABI39_RS11620 -1.3 -8.9 FGGY-family carbohydrate kinase compare
ABI39_RS02985 -1.3 -3.1 arginine repressor compare
ABI39_RS12725 -1.3 -2.7 acetolactate synthase small subunit compare
ABI39_RS15515 -1.3 -7.2 precorrin-4 C(11)-methyltransferase compare
ABI39_RS02480 -1.2 -1.9 DJ-1/PfpI family protein compare
ABI39_RS20430 -1.2 -4.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABI39_RS14265 -1.2 -7.1 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS16520 -1.2 -6.7 endopeptidase La compare
ABI39_RS16460 -1.2 -6.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS11940 -1.2 -7.3 saccharopine dehydrogenase family protein compare
ABI39_RS04930 -1.2 -2.4 helix-turn-helix transcriptional regulator compare
ABI39_RS15660 -1.2 -5.9 cobyric acid synthase compare
ABI39_RS11405 -1.2 -6.6 hypothetical protein compare
ABI39_RS14245 -1.2 -8.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS16870 -1.2 -2.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS02660 -1.2 -5.0 TonB-dependent receptor compare
ABI39_RS04730 -1.2 -2.0 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS15665 -1.2 -5.4 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS22955 -1.2 -2.5 hypothetical protein compare
ABI39_RS20420 -1.2 -5.7 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS23150 -1.1 -1.3 S26 family signal peptidase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source (+)-Arabinogalactan in Phocaeicola dorei CL03T12C01

For carbon source (+)-Arabinogalactan across organisms