Experiment set1S454 for Variovorax sp. SCN45

Compare to:

M9 with calcium pantothenate 10 mg/mL

200 most important genes:

  gene name fitness t score description  
GFF372 -5.2 -5.1 PMID: 11481431 compare
GFF4626 -4.9 -4.8 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF6022 -4.9 -6.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF5076 -4.8 -12.1 hypothetical protein compare
GFF5158 -4.8 -7.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF6876 -4.3 -11.8 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF6878 -4.2 -13.3 hypothetical protein compare
GFF4625 -4.2 -5.7 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF2627 -4.1 -4.0 Chorismate synthase (EC 4.2.3.5) compare
GFF944 -3.8 -3.6 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF6875 -3.7 -6.6 hypothetical protein compare
GFF408 -3.7 -2.5 Two-component system response regulator OmpR compare
GFF244 -3.6 -5.5 Cys regulon transcriptional activator CysB compare
GFF6512 -3.6 -2.4 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF4462 -3.4 -1.9 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF5896 -3.4 -8.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF5267 -3.2 -3.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF5325 -3.2 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF3265 -3.1 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF5261 -3.0 -10.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF5324 -2.9 -2.8 Shikimate kinase I (EC 2.7.1.71) compare
GFF6182 -2.9 -4.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF3838 -2.9 -16.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF2847 -2.7 -3.4 histone-like nucleoid-structuring protein H-NS compare
GFF6700 -2.7 -4.1 Single-stranded-DNA-specific exonuclease RecJ compare
GFF3889 -2.6 -3.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF243 -2.6 -5.6 Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3) compare
GFF302 -2.6 -2.4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF5512 -2.5 -3.0 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5307 -2.5 -5.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF3941 -2.5 -1.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5666 -2.5 -4.7 Prevent host death protein, Phd antitoxin compare
GFF6042 -2.5 -4.4 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF239 -2.4 -2.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF3890 -2.4 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3089 -2.4 -2.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF339 -2.4 -4.2 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF255 -2.4 -3.5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF3600 -2.3 -2.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF4724 -2.3 -6.3 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF2515 -2.3 -3.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF409 -2.2 -6.3 Osmolarity sensory histidine kinase EnvZ compare
GFF2659 -2.2 -3.3 Electron transfer flavoprotein, alpha subunit compare
GFF5065 -2.2 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF6513 -2.2 -6.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF4482 -2.1 -4.0 Transcriptional regulator MraZ compare
GFF968 -2.1 -3.2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF966 -2.1 -8.0 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF7295 -2.0 -6.0 HPr kinase/phosphorylase compare
GFF5513 -2.0 -2.7 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF371 -2.0 -3.1 RNA-binding protein YhbY compare
GFF946 -2.0 -4.6 Iron-sulfur cluster regulator IscR compare
GFF5509 -2.0 -3.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1047 -2.0 -11.0 hypothetical protein compare
GFF7178 -2.0 -2.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF5118 -1.9 -4.2 gluconolactonase family protein compare
GFF168 -1.9 -6.3 MCP methyltransferase, CheR-type compare
GFF2570 -1.8 -3.6 Rhodanese-related sulfurtransferase YibN compare
GFF967 -1.8 -12.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF1105 -1.8 -3.5 Helicase compare
GFF2090 -1.8 -4.2 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF3928 -1.8 -2.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF1206 -1.8 -7.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF1205 -1.8 -4.6 Oxidoreductase probably involved in sulfite reduction compare
GFF2853 -1.8 -3.1 DNA-binding protein HU-beta compare
GFF5523 -1.7 -2.0 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF2804 -1.7 -3.4 Membrane protein compare
GFF575 -1.6 -8.2 Tol-Pal system protein TolQ compare
GFF5333 -1.6 -2.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3264 -1.6 -5.0 Methionine biosynthesis protein MetW compare
GFF3888 -1.6 -5.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF1324 -1.6 -3.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF2251 -1.6 -2.7 no description compare
GFF291 -1.6 -7.1 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF3651 -1.6 -1.3 PTS system, IIA component compare
GFF5386 -1.5 -2.4 hypothetical protein compare
GFF6591 -1.5 -4.2 Transcriptional regulator, GntR family compare
GFF4346 -1.5 -1.8 no description compare
GFF4254 -1.5 -2.1 hypothetical protein compare
GFF2557 -1.4 -1.9 transport-associated compare
GFF5057 -1.4 -11.9 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF577 -1.4 -3.3 TolA protein compare
GFF6036 -1.4 -5.7 DNA translocase FtsK compare
GFF7335 -1.3 -1.4 no description compare
GFF2575 -1.3 -9.2 Quinolinate synthetase (EC 2.5.1.72) compare
GFF292 -1.3 -10.2 Tol-Pal system beta propeller repeat protein TolB compare
GFF5627 -1.3 -4.4 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF4790 -1.3 -4.2 Nudix-related transcriptional regulator NrtR compare
GFF2574 -1.3 -5.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF5369 -1.3 -1.9 Large-conductance mechanosensitive channel compare
GFF7216 -1.3 -1.5 hypothetical protein compare
GFF868 -1.2 -1.8 Uracil-DNA glycosylase, family 1 compare
GFF5246 -1.2 -7.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF2050 -1.2 -1.8 hypothetical protein compare
GFF6250 -1.2 -7.7 Glutamate--cysteine ligase-like protein YbdK compare
GFF506 -1.2 -1.5 hypothetical protein compare
GFF2073 -1.2 -4.0 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF4766 -1.2 -1.6 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 compare
GFF3369 -1.2 -1.5 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF1742 -1.1 -1.1 hypothetical protein compare
GFF4839 -1.1 -1.8 Transcriptional regulator PA2737, MerR family compare
GFF4640 -1.1 -9.2 hypothetical protein compare
GFF5411 -1.1 -7.9 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF3422 -1.1 -2.7 Lipoprotein-related protein compare
GFF1106 -1.1 -2.5 UvrD/REP helicase compare
GFF6869 -1.1 -4.8 no description compare
GFF3406 -1.1 -7.8 Benzoyl-CoA oxygenase component A compare
GFF3438 -1.1 -2.1 Amidohydrolase family protein compare
GFF4748 -1.1 -2.1 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF7380 -1.1 -6.3 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF5049 -1.1 -1.5 NAD-dependent protein deacetylase of SIR2 family compare
GFF7250 -1.1 -0.9 Putative transposase InsK for insertion sequence element IS150 compare
GFF7212 -1.1 -1.5 Nitrilotriacetate monooxygenase [FMNH2] compare
GFF6221 -1.1 -1.1 T6SS associated component TagF (ImpM) compare
GFF576 -1.1 -2.7 Tol biopolymer transport system, TolR protein compare
GFF273 -1.0 -5.4 Transcriptional regulator, Xre family compare
GFF270 -1.0 -7.7 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF5067 -1.0 -1.6 Transcriptional regulator, LysR family compare
GFF821 -1.0 -1.9 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF864 -1.0 -1.9 no description compare
GFF1013 -1.0 -1.1 hypothetical protein compare
GFF3427 -1.0 -2.3 FIG01006093: hypothetical protein compare
GFF5266 -1.0 -6.8 Transaldolase (EC 2.2.1.2) compare
GFF6949 -1.0 -1.8 no description compare
GFF6174 -1.0 -1.3 Fluoride ion transporter CrcB compare
GFF7189 -1.0 -2.2 dioxygenase, TauD/TfdA family compare
GFF1202 -1.0 -4.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF3267 -1.0 -3.2 RNA-binding protein compare
GFF4447 -0.9 -4.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF6116 -0.9 -2.7 MlrC compare
GFF5941 -0.9 -1.1 hypothetical protein compare
GFF6249 -0.9 -4.4 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF1203 -0.9 -4.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF3986 -0.9 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF487 -0.9 -5.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3736 -0.9 -1.1 UPF0102 protein YraN compare
GFF5739 -0.9 -1.1 Flagellar biosynthesis protein FliQ compare
GFF3723 -0.9 -5.4 Cytochrome c5 compare
GFF2304 -0.9 -5.1 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF4725 -0.9 -3.5 Anthranilate phosphoribosyltransferase-like protein compare
GFF2182 -0.9 -5.6 Inner membrane component of TAM transport system compare
GFF1708 -0.9 -2.8 no description compare
GFF848 -0.8 -3.0 no description compare
GFF5876 -0.8 -4.4 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF2688 -0.8 -1.3 Glutamine ABC transporter, substrate-binding protein GlnH compare
GFF2164 -0.8 -4.0 Transcriptional regulator, IclR family compare
GFF2128 -0.8 -4.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3320 -0.8 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF5156 -0.8 -7.2 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF6087 -0.8 -3.7 Transcriptional regulator, AcrR family compare
GFF6261 -0.8 -1.1 Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (EC 2.7.8.37) compare
GFF4530 -0.8 -5.2 MBL-fold metallo-hydrolase superfamily compare
GFF6246 -0.8 -2.9 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2298 -0.8 -7.1 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF6990 -0.8 -1.0 hypothetical protein compare
GFF4221 -0.8 -1.9 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) compare
GFF4108 -0.8 -1.7 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF618 -0.8 -1.5 Lactoylglutathione lyase and related lyases compare
GFF1156 -0.8 -1.6 Putative transmembrane protein compare
GFF2027 -0.8 -5.1 2-hydroxychromene-2-carboxylate isomerase family protein compare
GFF1204 -0.8 -3.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF12 -0.8 -1.7 Two-component system sensor histidine kinase compare
GFF6360 -0.8 -1.0 FIG00432660: hypothetical protein compare
GFF4208 -0.8 -2.9 BUG/TctC family periplasmic protein compare
GFF3152 -0.8 -1.5 hypothetical protein compare
GFF3624 -0.8 -4.9 Putative transmembrane protein compare
GFF6475 -0.8 -1.3 hypothetical protein compare
GFF5727 -0.8 -1.2 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF2273 -0.7 -1.8 Transcriptional regulator, AcrR family compare
GFF2413 -0.7 -1.2 hypothetical protein compare
GFF5742 -0.7 -1.0 Flagellar motor switch protein FliN compare
GFF6145 -0.7 -2.6 2-aminoethylphosphonate utilization transcriptional regulator, GntR family compare
GFF489 -0.7 -2.0 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF6516 -0.7 -2.9 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF3070 -0.7 -2.6 no description compare
GFF5797 -0.7 -2.2 no description compare
GFF89 -0.7 -1.4 hypothetical protein compare
GFF2329 -0.7 -0.7 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF5332 -0.7 -6.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2300 -0.7 -4.8 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF1873 -0.7 -2.8 KEGG: LacI family transcriptional regulator compare
GFF5220 -0.7 -0.9 putative secreted oxidoreductase compare
GFF5815 -0.7 -1.2 Uncharacterized MFS-type transporter compare
GFF3384 -0.7 -1.8 Transcriptional regulator, Crp/Fnr family compare
GFF2252 -0.7 -2.0 RNA-2',3'-PO4:RNA-5'-OH ligase compare
GFF3034 -0.7 -0.9 no description compare
GFF2734 -0.7 -3.5 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF4490 -0.7 -3.5 Site-specific tyrosine recombinase XerC compare
GFF4670 -0.7 -3.1 Transcriptional regulator, AcrR family compare
GFF2183 -0.7 -5.0 Outer membrane component of TAM transport system compare
GFF2297 -0.7 -5.1 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF7047 -0.7 -1.5 hypothetical protein compare
GFF4617 -0.7 -2.5 2-keto-3-deoxy-L-fuconate dehydrogenase compare
GFF3749 -0.7 -0.7 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF6996 -0.7 -0.9 Flagellar hook-basal body complex protein FliE compare
GFF290 -0.7 -3.5 Cell division coordinator CpoB compare
GFF1858 -0.7 -0.9 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF2306 -0.7 -4.5 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF2302 -0.7 -4.2 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF6694 -0.7 -1.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in vitamin experiments

For vitamin calcium pantothenate across organisms