Experiment set1S454 for Bacteroides stercoris CC31F

Compare to:

Dextrin from potato starch 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1181_RS03315 -8.1 -7.5 N-acetylornithine carbamoyltransferase compare
HMPREF1181_RS06570 -8.1 -7.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1181_RS00050 -8.1 -12.3 threonine synthase compare
HMPREF1181_RS01245 -7.9 -2.4 type II 3-dehydroquinate dehydratase compare
HMPREF1181_RS03450 -7.5 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1181_RS06565 -7.3 -4.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1181_RS06575 -7.3 -3.7 prephenate dehydrogenase compare
HMPREF1181_RS02880 -7.2 -4.6 M20 family metallo-hydrolase compare
HMPREF1181_RS03445 -7.1 -9.2 aspartate aminotransferase family protein compare
HMPREF1181_RS13805 -6.9 -1.8 histone H1 compare
HMPREF1181_RS15350 -6.8 -6.6 tryptophan synthase subunit alpha compare
HMPREF1181_RS14990 -6.8 -10.0 aspartate carbamoyltransferase compare
HMPREF1181_RS03410 -6.8 -11.3 argininosuccinate lyase compare
HMPREF1181_RS03465 -6.6 -7.3 GNAT family N-acetyltransferase compare
HMPREF1181_RS03460 -6.5 -9.7 argininosuccinate synthase compare
HMPREF1181_RS06355 -6.5 -6.3 orotidine-5'-phosphate decarboxylase compare
HMPREF1181_RS00060 -6.4 -13.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1181_RS15485 -6.3 -7.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1181_RS03440 -6.2 -8.1 pyrroline-5-carboxylate reductase compare
HMPREF1181_RS06190 -6.1 -2.3 tetratricopeptide repeat protein compare
HMPREF1181_RS11050 -6.1 -13.4 diaminopimelate decarboxylase compare
HMPREF1181_RS02540 -6.0 -5.3 acetylglutamate kinase compare
HMPREF1181_RS04125 -6.0 -12.0 hypothetical protein compare
HMPREF1181_RS03405 -6.0 -3.9 SRPBCC family protein compare
HMPREF1181_RS05605 -6.0 -23.9 phosphoribosylformylglycinamidine synthase compare
HMPREF1181_RS07435 -6.0 -14.4 IMP dehydrogenase compare
HMPREF1181_RS04130 -5.9 -31.1 SLBB domain-containing protein compare
HMPREF1181_RS16865 -5.9 -5.8 D-3-phosphoglycerate dehydrogenase compare
HMPREF1181_RS04650 -5.9 -7.6 dihydroorotase compare
HMPREF1181_RS15490 -5.8 -3.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1181_RS02530 -5.8 -2.2 shikimate kinase compare
HMPREF1181_RS14180 -5.7 -4.9 dihydroorotate dehydrogenase compare
HMPREF1181_RS03325 -5.7 -13.5 glutamate 5-kinase compare
HMPREF1181_RS00055 -5.7 -8.7 cofactor-independent phosphoglycerate mutase compare
HMPREF1181_RS03320 -5.6 -10.7 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1181_RS03765 -5.6 -14.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1181_RS15320 -5.6 -7.0 tryptophan synthase subunit beta compare
HMPREF1181_RS11070 -5.6 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1181_RS14125 -5.5 -10.4 3-isopropylmalate dehydrogenase compare
HMPREF1181_RS06560 -5.5 -5.1 prephenate dehydratase compare
HMPREF1181_RS14145 -5.5 -13.5 3-isopropylmalate dehydratase large subunit compare
HMPREF1181_RS11065 -5.4 -6.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1181_RS15345 -5.3 -8.3 phosphoribosylanthranilate isomerase compare
HMPREF1181_RS08275 -5.3 -7.8 6-phosphofructokinase compare
HMPREF1181_RS14140 -5.2 -3.2 3-isopropylmalate dehydratase small subunit compare
HMPREF1181_RS14185 -5.2 -9.3 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1181_RS14150 -5.2 -13.0 2-isopropylmalate synthase compare
HMPREF1181_RS00165 -5.1 -8.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1181_RS11075 -5.0 -12.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1181_RS06130 -5.0 -7.5 glutamine-hydrolyzing GMP synthase compare
HMPREF1181_RS07450 -4.9 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1181_RS06340 -4.8 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1181_RS06660 -4.8 -2.4 hypothetical protein compare
HMPREF1181_RS12530 -4.8 -10.9 GDP-mannose 4,6-dehydratase compare
HMPREF1181_RS15340 -4.8 -3.8 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1181_RS10835 -4.7 -10.5 tetratricopeptide repeat protein compare
HMPREF1181_RS15530 -4.7 -11.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1181_RS14995 -4.7 -6.9 aspartate carbamoyltransferase regulatory subunit compare
HMPREF1181_RS05875 -4.6 -1.4 30S ribosomal protein S1 compare
HMPREF1181_RS04275 -4.6 -11.1 tetratricopeptide repeat protein compare
HMPREF1181_RS17835 -4.6 -1.7 hypothetical protein compare
HMPREF1181_RS11305 -4.5 -5.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1181_RS06320 -4.5 -1.4 shikimate dehydrogenase compare
HMPREF1181_RS04800 -4.5 -9.7 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1181_RS01135 -4.5 -1.6 tRNA-Arg compare
HMPREF1181_RS15135 -4.4 -15.2 DUF3078 domain-containing protein compare
HMPREF1181_RS01315 -4.4 -14.2 hypothetical protein compare
HMPREF1181_RS04860 -4.4 -10.7 histidinol dehydrogenase compare
HMPREF1181_RS05610 -4.4 -6.7 response regulator compare
HMPREF1181_RS16410 -4.4 -9.4 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1181_RS09265 -4.3 -1.8 3-dehydroquinate synthase compare
HMPREF1181_RS15330 -4.3 -9.1 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1181_RS03400 -4.3 -2.3 orotate phosphoribosyltransferase compare
HMPREF1181_RS06085 -4.3 -4.4 aspartate 1-decarboxylase compare
HMPREF1181_RS13230 -4.3 -14.3 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1181_RS16950 -4.3 -9.9 RNA polymerase sigma factor compare
HMPREF1181_RS06310 -4.3 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1181_RS15335 -4.2 -5.9 anthranilate phosphoribosyltransferase compare
HMPREF1181_RS14085 -4.2 -9.9 adenylosuccinate synthase compare
HMPREF1181_RS03250 -4.2 -4.8 RluA family pseudouridine synthase compare
HMPREF1181_RS04815 -4.2 -10.0 inositol-3-phosphate synthase compare
HMPREF1181_RS15095 -4.1 -8.7 UDP-glucose 4-epimerase GalE compare
HMPREF1181_RS01305 -4.1 -17.1 N-acetylneuraminate synthase family protein compare
HMPREF1181_RS05725 -4.1 -9.4 DUF4831 family protein compare
HMPREF1181_RS04855 -4.1 -14.1 histidinol-phosphate transaminase compare
HMPREF1181_RS13340 -4.1 -14.9 tetratricopeptide repeat protein compare
HMPREF1181_RS02275 -4.0 -1.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1181_RS10195 -4.0 -9.3 SMI1/KNR4 family protein compare
HMPREF1181_RS07880 -4.0 -0.9 DUF4290 domain-containing protein compare
HMPREF1181_RS15325 -4.0 -10.3 anthranilate synthase component I family protein compare
HMPREF1181_RS06865 -4.0 -1.9 branched-chain amino acid aminotransferase compare
HMPREF1181_RS01140 -4.0 -15.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1181_RS01325 -4.0 -13.5 glycosyltransferase compare
HMPREF1181_RS01580 -3.9 -7.5 phosphoribosylamine--glycine ligase compare
HMPREF1181_RS09330 -3.9 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1181_RS01310 -3.9 -8.0 NTP transferase domain-containing protein compare
HMPREF1181_RS04850 -3.9 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1181_RS00940 -3.9 -0.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1181_RS01145 -3.9 -8.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1181_RS07465 -3.8 -6.3 RNA-binding protein compare
HMPREF1181_RS04810 -3.8 -1.8 phosphatidylglycerophosphatase A compare
HMPREF1181_RS08330 -3.8 -16.3 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1181_RS05780 -3.8 -3.7 SurA N-terminal domain-containing protein compare
HMPREF1181_RS12860 -3.7 -5.6 hypothetical protein compare
HMPREF1181_RS08190 -3.7 -4.8 cardiolipin synthase compare
HMPREF1181_RS08315 -3.7 -11.3 ketol-acid reductoisomerase compare
HMPREF1181_RS06505 -3.7 -1.4 ribulose-phosphate 3-epimerase compare
HMPREF1181_RS16385 -3.6 -3.8 tetratricopeptide repeat protein compare
HMPREF1181_RS07510 -3.6 -5.2 DUF177 domain-containing protein compare
HMPREF1181_RS04120 -3.6 -7.6 UpxY family transcription antiterminator compare
HMPREF1181_RS00790 -3.6 -6.1 mannose-1-phosphate guanylyltransferase compare
HMPREF1181_RS08050 -3.5 -1.8 hypothetical protein compare
HMPREF1181_RS04380 -3.5 -13.4 glycosyltransferase family 2 protein compare
HMPREF1181_RS12515 -3.5 -12.1 6-phosphogluconolactonase compare
HMPREF1181_RS08335 -3.5 -19.9 dihydroxy-acid dehydratase compare
HMPREF1181_RS12535 -3.4 -8.9 GDP-L-fucose synthase compare
HMPREF1181_RS06930 -3.4 -2.4 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1181_RS11080 -3.4 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1181_RS05890 -3.3 -10.3 glutamine synthetase III compare
HMPREF1181_RS04365 -3.3 -15.5 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1181_RS01535 -3.3 -2.0 phosphatase PAP2 family protein compare
HMPREF1181_RS07010 -3.3 -7.9 adenylosuccinate lyase compare
HMPREF1181_RS00190 -3.3 -2.3 translocation/assembly module TamB domain-containing protein compare
HMPREF1181_RS16790 -3.2 -5.8 helix-turn-helix domain-containing protein compare
HMPREF1181_RS10535 -3.2 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1181_RS01320 -3.2 -17.1 glycosyltransferase compare
HMPREF1181_RS12010 -3.2 -9.8 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1181_RS08495 -3.1 -5.2 methylmalonyl-CoA mutase compare
HMPREF1181_RS16430 -3.1 -0.7 tRNA-Asp compare
HMPREF1181_RS00185 -3.1 -1.7 BamA/TamA family outer membrane protein compare
HMPREF1181_RS04370 -3.1 -11.4 glycosyltransferase family 4 protein compare
HMPREF1181_RS04350 -3.1 -11.0 glycosyltransferase compare
HMPREF1181_RS03365 -3.1 -3.0 OmpH family outer membrane protein compare
HMPREF1181_RS01780 -3.1 -11.3 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1181_RS11900 -3.0 -7.0 saccharopine dehydrogenase family protein compare
HMPREF1181_RS05475 -3.0 -5.0 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1181_RS04375 -3.0 -10.3 EpsG family protein compare
HMPREF1181_RS09150 -3.0 -4.2 ribosome silencing factor compare
HMPREF1181_RS04405 -3.0 -8.4 sugar transferase compare
HMPREF1181_RS14610 -3.0 -3.4 DUF4296 domain-containing protein compare
HMPREF1181_RS15010 -2.9 -8.9 serine hydroxymethyltransferase compare
HMPREF1181_RS15240 -2.9 -6.2 PD-(D/E)XK nuclease family protein compare
HMPREF1181_RS14135 -2.9 -6.9 2-isopropylmalate synthase compare
HMPREF1181_RS15460 -2.9 -7.2 Na+/H+ antiporter NhaC family protein compare
HMPREF1181_RS07445 -2.9 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
HMPREF1181_RS01665 -2.9 -5.9 DUF4271 domain-containing protein compare
HMPREF1181_RS05800 -2.9 -7.3 hypothetical protein compare
HMPREF1181_RS04355 -2.9 -10.9 LicD family protein compare
HMPREF1181_RS04400 -2.9 -9.8 polysaccharide biosynthesis protein compare
HMPREF1181_RS07455 -2.8 -7.3 trigger factor compare
HMPREF1181_RS08340 -2.8 -3.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1181_RS05665 -2.8 -6.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1181_RS15440 -2.8 -1.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1181_RS14340 -2.7 -4.8 endopeptidase La compare
HMPREF1181_RS15660 -2.7 -2.3 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1181_RS08325 -2.7 -6.4 acetolactate synthase small subunit compare
HMPREF1181_RS14835 -2.7 -10.1 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1181_RS00760 -2.7 -2.2 MobC family plasmid mobilization relaxosome protein compare
HMPREF1181_RS00865 -2.7 -5.5 helix-turn-helix transcriptional regulator compare
HMPREF1181_RS04865 -2.7 -4.9 ATP phosphoribosyltransferase compare
HMPREF1181_RS15235 -2.7 -2.4 UvrD-helicase domain-containing protein compare
HMPREF1181_RS16715 -2.6 -5.6 hypothetical protein compare
HMPREF1181_RS01255 -2.6 -7.6 tetratricopeptide repeat protein compare
HMPREF1181_RS14115 -2.6 -11.0 tetratricopeptide repeat protein compare
HMPREF1181_RS10590 -2.6 -2.3 cobalamin biosynthesis protein CbiD compare
HMPREF1181_RS14850 -2.5 -4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1181_RS14245 -2.5 -4.0 agmatine deiminase family protein compare
HMPREF1181_RS01585 -2.5 -9.0 hypothetical protein compare
HMPREF1181_RS05125 -2.5 -2.0 terminase compare
HMPREF1181_RS01730 -2.5 -6.0 class I SAM-dependent methyltransferase compare
HMPREF1181_RS02415 -2.5 -7.4 6-phosphofructokinase compare
HMPREF1181_RS07870 -2.5 -6.3 YicC family protein compare
HMPREF1181_RS06545 -2.5 -8.4 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1181_RS08795 -2.5 -7.9 hypothetical protein compare
HMPREF1181_RS05805 -2.5 -6.1 type III pantothenate kinase compare
HMPREF1181_RS10565 -2.4 -7.4 TonB-dependent receptor compare
HMPREF1181_RS04535 -2.4 -4.9 transcriptional repressor compare
HMPREF1181_RS16445 -2.4 -5.6 GNAT family N-acetyltransferase compare
HMPREF1181_RS15650 -2.4 -1.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1181_RS02535 -2.4 -6.6 biosynthetic arginine decarboxylase compare
HMPREF1181_RS04415 -2.4 -7.1 UpxY family transcription antiterminator compare
HMPREF1181_RS04395 -2.4 -6.5 hypothetical protein compare
HMPREF1181_RS16455 -2.4 -2.5 recombination protein RecR compare
HMPREF1181_RS11750 -2.4 -3.6 Smr/MutS family protein compare
HMPREF1181_RS16500 -2.3 -7.5 carboxynorspermidine decarboxylase compare
HMPREF1181_RS04550 -2.3 -9.9 hypothetical protein compare
HMPREF1181_RS10385 -2.3 -0.8 hypothetical protein compare
HMPREF1181_RS04135 -2.3 -1.8 tRNA-Thr compare
HMPREF1181_RS15445 -2.3 -2.7 sugar kinase compare
HMPREF1181_RS01550 -2.3 -1.9 ribonuclease R compare
HMPREF1181_RS11055 -2.2 -4.5 aspartate kinase compare
HMPREF1181_RS04360 -2.2 -5.2 SDR family NAD(P)-dependent oxidoreductase compare
HMPREF1181_RS00875 -2.2 -6.9 CPBP family intramembrane metalloprotease compare
HMPREF1181_RS10540 -2.2 -3.3 cobyrinate a,c-diamide synthase compare
HMPREF1181_RS07040 -2.2 -0.9 hypothetical protein compare
HMPREF1181_RS08595 -2.2 -6.3 aspartate--ammonia ligase compare
HMPREF1181_RS10735 -2.2 -7.4 hypothetical protein compare
HMPREF1181_RS14790 -2.2 -12.2 alpha amylase C-terminal domain-containing protein compare
HMPREF1181_RS00265 -2.1 -9.7 23S ribosomal RNA compare
HMPREF1181_RS10720 -2.1 -4.9 nitronate monooxygenase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Dextrin from potato starch in Bacteroides stercoris CC31F

For carbon source Dextrin from potato starch across organisms