Experiment set1S453 for Phocaeicola dorei CL03T12C01

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04685 -10.6 -7.3 acetylglutamate kinase compare
ABI39_RS02870 -9.9 -6.8 acetylornithine carbamoyltransferase compare
ABI39_RS07790 -8.4 -8.7 M20 family metallo-hydrolase compare
ABI39_RS02975 -8.1 -11.9 argininosuccinate synthase compare
ABI39_RS02980 -8.1 -11.1 N-acetyltransferase compare
ABI39_RS07095 -8.1 -20.3 argininosuccinate lyase compare
ABI39_RS02970 -7.9 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02880 -7.5 -11.5 glutamate 5-kinase compare
ABI39_RS10500 -7.3 -5.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS02315 -7.2 -7.0 IMP dehydrogenase compare
ABI39_RS10510 -7.1 -10.1 prephenate dehydratase compare
ABI39_RS10430 -6.9 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS04695 -6.9 -7.5 shikimate kinase compare
ABI39_RS07005 -6.8 -6.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS16910 -6.8 -11.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS02875 -6.8 -11.1 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10435 -6.7 -12.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS11830 -6.7 -6.5 ATP phosphoribosyltransferase compare
ABI39_RS10260 -6.5 -12.5 adenylosuccinate synthase compare
ABI39_RS16905 -6.5 -14.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11840 -6.2 -7.3 histidinol-phosphate transaminase compare
ABI39_RS11845 -6.0 -10.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS05660 -5.9 -8.2 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10440 -5.9 -10.6 threonine synthase compare
ABI39_RS04795 -5.8 -4.0 M28 family peptidase compare
ABI39_RS06670 -5.4 -14.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS06675 -5.4 -9.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS19925 -5.3 -6.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10495 -5.3 -11.4 prephenate dehydrogenase compare
ABI39_RS19930 -5.3 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS12665 -5.3 -10.2 shikimate dehydrogenase compare
ABI39_RS11835 -5.3 -8.2 histidinol dehydrogenase compare
ABI39_RS18745 -5.1 -6.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS17140 -5.0 -3.4 AAA family ATPase compare
ABI39_RS12645 -4.8 -13.4 chorismate synthase compare
ABI39_RS12675 -4.7 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS22955 -4.7 -4.0 hypothetical protein compare
ABI39_RS10200 -4.6 -15.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS04245 -4.6 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS17950 -4.6 -3.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS10205 -4.5 -9.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS09915 -4.5 -4.1 DUF5056 domain-containing protein compare
ABI39_RS19950 -4.5 -3.1 diaminopimelate decarboxylase compare
ABI39_RS12735 -4.5 -7.9 ketol-acid reductoisomerase compare
ABI39_RS06055 -4.4 -8.2 phosphoribosylamine--glycine ligase compare
ABI39_RS00475 -4.4 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS21075 -4.4 -7.2 tryptophan synthase subunit alpha compare
ABI39_RS10215 -4.3 -10.4 3-isopropylmalate dehydrogenase compare
ABI39_RS12715 -4.3 -14.8 dihydroxy-acid dehydratase compare
ABI39_RS09575 -4.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS12720 -4.2 -15.5 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS21065 -4.1 -8.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS00405 -4.0 -21.0 phosphoribosylformylglycinamidine synthase compare
ABI39_RS21060 -3.9 -10.4 anthranilate phosphoribosyltransferase compare
ABI39_RS08035 -3.9 -3.8 adenylosuccinate lyase compare
ABI39_RS01415 -3.8 -3.7 branched-chain amino acid aminotransferase compare
ABI39_RS17160 -3.8 -3.7 VWA domain-containing protein compare
ABI39_RS10195 -3.8 -7.9 2-isopropylmalate synthase compare
ABI39_RS14560 -3.7 -4.6 aspartate 1-decarboxylase compare
ABI39_RS00205 -3.7 -5.1 phosphoglucosamine mutase compare
ABI39_RS01650 -3.7 -8.8 methylmalonyl-CoA mutase small subunit compare
ABI39_RS11655 -3.7 -4.3 MFS transporter compare
ABI39_RS10640 -3.5 -13.6 serine dehydratase subunit alpha family protein compare
ABI39_RS11405 -3.4 -10.9 hypothetical protein compare
ABI39_RS17170 -3.4 -4.6 protein BatD compare
ABI39_RS02755 -3.4 -4.6 glycosyltransferase compare
ABI39_RS21045 -3.3 -7.7 tryptophan synthase subunit beta compare
ABI39_RS01655 -3.3 -13.2 methylmalonyl-CoA mutase compare
ABI39_RS12755 -3.3 -3.9 SurA N-terminal domain-containing protein compare
ABI39_RS10505 -3.2 -9.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS00770 -3.1 -16.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS01730 -3.0 -6.8 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS09685 -3.0 -3.5 hypothetical protein compare
ABI39_RS09670 -2.9 -2.0 cardiolipin synthase compare
ABI39_RS10110 -2.9 -12.8 S9 family peptidase compare
ABI39_RS21350 -2.9 -2.0 aspartate--ammonia ligase compare
ABI39_RS06995 -2.9 -10.4 tetratricopeptide repeat protein compare
ABI39_RS01040 -2.8 -3.5 L-rhamnose mutarotase compare
ABI39_RS14465 -2.8 -10.2 hypothetical protein compare
ABI39_RS01360 -2.7 -8.8 hypothetical protein compare
ABI39_RS09845 -2.7 -2.6 (d)CMP kinase compare
ABI39_RS18300 -2.7 -5.1 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS17420 -2.7 -11.3 serine hydroxymethyltransferase compare
ABI39_RS10650 -2.6 -15.7 AraC family transcriptional regulator compare
ABI39_RS08195 -2.6 -5.8 hypothetical protein compare
ABI39_RS02960 -2.5 -16.1 pyrroline-5-carboxylate reductase compare
ABI39_RS18330 -2.5 -9.7 PD40 domain-containing protein compare
ABI39_RS10210 -2.5 -6.2 2-isopropylmalate synthase compare
ABI39_RS12420 -2.4 -8.3 OadG family protein compare
ABI39_RS08305 -2.4 -7.6 DUF4831 family protein compare
ABI39_RS07090 -2.4 -1.1 hypothetical protein compare
ABI39_RS12425 -2.4 -9.9 acyl-CoA carboxylase subunit beta compare
ABI39_RS17150 -2.4 -3.7 hypothetical protein compare
ABI39_RS17640 -2.3 -5.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS02470 -2.3 -4.7 ATP-dependent DNA helicase RecG compare
ABI39_RS12725 -2.3 -4.2 acetolactate synthase small subunit compare
ABI39_RS01725 -2.3 -3.5 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS04230 -2.3 -6.1 RNA polymerase factor sigma-54 compare
ABI39_RS19385 -2.2 -2.4 hypothetical protein compare
ABI39_RS04885 -2.2 -5.1 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS04690 -2.2 -4.6 biosynthetic arginine decarboxylase compare
ABI39_RS13000 -2.2 -5.8 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS12415 -2.1 -6.0 biotin/lipoyl-binding protein compare
ABI39_RS12430 -2.1 -1.9 methylmalonyl-CoA epimerase compare
ABI39_RS04675 -2.1 -2.5 hypothetical protein compare
ABI39_RS01735 -2.1 -6.5 acyl-CoA dehydrogenase family protein compare
ABI39_RS13185 -2.0 -2.5 manganese efflux pump compare
ABI39_RS07010 -2.0 -3.2 pyruvate kinase compare
ABI39_RS00410 -2.0 -3.7 response regulator compare
ABI39_RS19920 -1.9 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS01300 -1.9 -9.5 NADP-specific glutamate dehydrogenase compare
ABI39_RS04970 -1.8 -4.7 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS04950 -1.8 -2.5 DEAD/DEAH box helicase compare
ABI39_RS09830 -1.8 -6.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS09195 -1.8 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS04730 -1.8 -3.0 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS19945 -1.7 -5.6 aspartate kinase compare
ABI39_RS17175 -1.7 -4.6 tetratricopeptide repeat protein compare
ABI39_RS12810 -1.6 -3.4 hypothetical protein compare
ABI39_RS21050 -1.6 -3.4 anthranilate synthase component I family protein compare
ABI39_RS16870 -1.6 -3.4 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS16460 -1.6 -7.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS15525 -1.5 -6.9 precorrin-3B C(17)-methyltransferase compare
ABI39_RS15510 -1.5 -4.9 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS06380 -1.5 -4.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS02480 -1.5 -1.5 DJ-1/PfpI family protein compare
ABI39_RS16880 -1.5 -3.7 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS15670 -1.5 -6.9 cobalamin biosynthesis protein CobD compare
ABI39_RS08145 -1.4 -1.7 DUF4290 domain-containing protein compare
ABI39_RS15500 -1.4 -7.1 iron ABC transporter permease compare
ABI39_RS15660 -1.4 -8.0 cobyric acid synthase compare
ABI39_RS02140 -1.4 -2.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS16885 -1.4 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS16895 -1.4 -3.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS16455 -1.4 -6.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS19935 -1.4 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS09850 -1.3 -3.7 energy transducer TonB compare
ABI39_RS03320 -1.3 -9.5 FecR domain-containing protein compare
ABI39_RS14030 -1.3 -3.9 MFS transporter compare
ABI39_RS15495 -1.3 -6.6 ABC transporter substrate-binding protein compare
ABI39_RS06050 -1.3 -3.1 hypothetical protein compare
ABI39_RS15490 -1.3 -6.9 precorrin-2 C(20)-methyltransferase compare
ABI39_RS15665 -1.3 -6.4 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS07000 -1.3 -3.0 site-specific tyrosine recombinase XerD compare
ABI39_RS20080 -1.2 -6.5 electron transport complex subunit RsxA compare
ABI39_RS04700 -1.2 -1.9 type I DNA topoisomerase compare
ABI39_RS15515 -1.2 -7.8 precorrin-4 C(11)-methyltransferase compare
ABI39_RS15265 -1.2 -2.4 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS16695 -1.2 -8.8 carbon-nitrogen hydrolase compare
ABI39_RS13180 -1.1 -3.6 FAD:protein FMN transferase compare
ABI39_RS12410 -1.1 -5.4 sodium ion-translocating decarboxylase subunit beta compare
ABI39_RS16450 -1.1 -4.9 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS09825 -1.1 -3.0 DUF1573 domain-containing protein compare
ABI39_RS11660 -1.1 -2.9 galactose mutarotase compare
ABI39_RS15650 -1.1 -6.4 cobyrinate a,c-diamide synthase compare
ABI39_RS17205 -1.1 -2.4 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS10870 -1.1 -6.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS20095 -1.0 -8.3 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS02500 -1.0 -3.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS20965 -1.0 -2.1 SPOR domain-containing protein compare
ABI39_RS20085 -1.0 -6.1 electron transport complex subunit E compare
ABI39_RS11940 -1.0 -8.0 saccharopine dehydrogenase family protein compare
ABI39_RS17730 -1.0 -5.4 carboxynorspermidine decarboxylase compare
ABI39_RS12780 -1.0 -2.6 type III pantothenate kinase compare
ABI39_RS20105 -1.0 -4.9 Fe-S cluster domain-containing protein compare
ABI39_RS00090 -1.0 -3.2 HAMP domain-containing histidine kinase compare
ABI39_RS12730 -1.0 -3.2 acyl-ACP thioesterase compare
ABI39_RS14480 -1.0 -5.3 ferrous iron transport protein B compare
ABI39_RS02475 -1.0 -2.0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
ABI39_RS02490 -0.9 -2.7 biopolymer transporter ExbD compare
ABI39_RS12670 -0.9 -3.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS15410 -0.9 -4.3 DUF4296 domain-containing protein compare
ABI39_RS09230 -0.9 -2.1 hypothetical protein compare
ABI39_RS17195 -0.9 -5.5 hypothetical protein compare
ABI39_RS15855 -0.9 -2.8 helix-turn-helix transcriptional regulator compare
ABI39_RS04930 -0.9 -2.7 helix-turn-helix transcriptional regulator compare
ABI39_RS15505 -0.9 -4.7 ABC transporter ATP-binding protein compare
ABI39_RS06115 -0.9 -5.8 phosphatase PAP2 family protein compare
ABI39_RS20100 -0.9 -5.0 electron transport complex subunit RsxC compare
ABI39_RS15845 -0.9 -2.6 hypothetical protein compare
ABI39_RS14085 -0.9 -1.3 hypothetical protein compare
ABI39_RS16175 -0.9 -5.1 macro domain-containing protein compare
ABI39_RS17765 -0.9 -2.4 hypothetical protein compare
ABI39_RS06130 -0.9 -5.5 U32 family peptidase compare
ABI39_RS07745 -0.9 -6.5 HDIG domain-containing protein compare
ABI39_RS16875 -0.8 -1.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS20430 -0.8 -3.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABI39_RS02285 -0.8 -1.3 DNA mismatch repair endonuclease MutL compare
ABI39_RS15840 -0.8 -2.9 hypothetical protein compare
ABI39_RS04200 -0.8 -4.9 Na/Pi cotransporter family protein compare
ABI39_RS20110 -0.8 -2.1 SoxR reducing system RseC family protein compare
ABI39_RS08020 -0.8 -2.7 GntR family transcriptional regulator compare
ABI39_RS04280 -0.8 -2.5 DUF4292 domain-containing protein compare
ABI39_RS18025 -0.8 -1.5 LytTR family transcriptional regulator compare
ABI39_RS02985 -0.8 -1.8 arginine repressor compare
ABI39_RS20615 -0.8 -5.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS18740 -0.8 -3.2 ATP-binding protein compare
ABI39_RS08510 -0.8 -2.4 NADH-quinone oxidoreductase subunit NuoK compare
ABI39_RS00240 -0.8 -2.9 NigD-like N-terminal domain-containing protein compare
ABI39_RS00095 -0.8 -6.0 elongation factor G compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source D-Glucosamine Hydrochloride across organisms