Experiment set1S451 for Phocaeicola dorei CL03T12C01

Compare to:

D-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04685 -10.4 -7.2 acetylglutamate kinase compare
ABI39_RS10440 -10.4 -7.2 threonine synthase compare
ABI39_RS02975 -10.2 -7.0 argininosuccinate synthase compare
ABI39_RS07095 -10.0 -6.9 argininosuccinate lyase compare
ABI39_RS07790 -9.9 -6.8 M20 family metallo-hydrolase compare
ABI39_RS10205 -9.7 -6.7 3-isopropylmalate dehydratase small subunit compare
ABI39_RS16910 -9.3 -6.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS10495 -9.1 -6.3 prephenate dehydrogenase compare
ABI39_RS10260 -8.8 -8.6 adenylosuccinate synthase compare
ABI39_RS02970 -8.4 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS04515 -8.4 -8.2 L-fucose isomerase conserved
ABI39_RS02980 -8.3 -9.8 N-acetyltransferase compare
ABI39_RS11620 -8.3 -12.7 FGGY-family carbohydrate kinase compare
ABI39_RS16905 -8.2 -9.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10510 -8.2 -8.0 prephenate dehydratase compare
ABI39_RS02870 -8.0 -8.1 acetylornithine carbamoyltransferase compare
ABI39_RS10215 -7.9 -13.1 3-isopropylmalate dehydrogenase compare
ABI39_RS10430 -7.8 -13.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS05660 -7.8 -9.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS12645 -7.8 -13.0 chorismate synthase compare
ABI39_RS02875 -7.7 -12.7 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02880 -7.6 -11.5 glutamate 5-kinase compare
ABI39_RS11835 -7.5 -5.2 histidinol dehydrogenase compare
ABI39_RS10200 -7.4 -15.1 3-isopropylmalate dehydratase large subunit compare
ABI39_RS06675 -7.4 -10.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS11830 -7.4 -5.1 ATP phosphoribosyltransferase compare
ABI39_RS02315 -7.3 -5.1 IMP dehydrogenase compare
ABI39_RS10435 -7.2 -11.8 cofactor-independent phosphoglycerate mutase compare
ABI39_RS06055 -7.2 -8.6 phosphoribosylamine--glycine ligase compare
ABI39_RS12715 -7.2 -14.2 dihydroxy-acid dehydratase compare
ABI39_RS10195 -6.9 -7.1 2-isopropylmalate synthase compare
ABI39_RS19930 -6.8 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS07005 -6.7 -6.4 type II 3-dehydroquinate dehydratase compare
ABI39_RS06670 -6.7 -15.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS21065 -6.7 -7.3 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS11840 -6.6 -6.5 histidinol-phosphate transaminase compare
ABI39_RS10500 -6.5 -6.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS00405 -6.5 -14.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS00475 -6.4 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS12665 -6.2 -8.5 shikimate dehydrogenase compare
ABI39_RS04245 -6.2 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS04695 -6.1 -6.4 shikimate kinase compare
ABI39_RS19985 -6.1 -4.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS21075 -5.9 -8.0 tryptophan synthase subunit alpha compare
ABI39_RS12720 -5.8 -17.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS13185 -5.7 -3.7 manganese efflux pump compare
ABI39_RS21060 -5.7 -9.6 anthranilate phosphoribosyltransferase compare
ABI39_RS11845 -5.7 -10.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04795 -5.6 -3.7 M28 family peptidase compare
ABI39_RS19925 -5.6 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS01650 -5.4 -9.7 methylmalonyl-CoA mutase small subunit compare
ABI39_RS10110 -5.4 -13.5 S9 family peptidase compare
ABI39_RS01360 -5.4 -9.0 hypothetical protein compare
ABI39_RS09575 -5.3 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS12735 -5.2 -6.6 ketol-acid reductoisomerase compare
ABI39_RS01655 -5.1 -11.3 methylmalonyl-CoA mutase compare
ABI39_RS06995 -5.0 -10.4 tetratricopeptide repeat protein compare
ABI39_RS18745 -4.8 -6.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS12675 -4.8 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS10505 -4.6 -12.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS00205 -4.6 -3.2 phosphoglucosamine mutase compare
ABI39_RS00770 -4.5 -14.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS17170 -4.5 -3.1 protein BatD compare
ABI39_RS17950 -4.4 -3.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS18330 -4.4 -12.3 PD40 domain-containing protein compare
ABI39_RS08195 -4.4 -8.0 hypothetical protein compare
ABI39_RS19950 -4.3 -3.0 diaminopimelate decarboxylase compare
ABI39_RS08305 -4.3 -8.6 DUF4831 family protein compare
ABI39_RS17140 -4.2 -4.1 AAA family ATPase compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS02470 -4.1 -6.2 ATP-dependent DNA helicase RecG compare
ABI39_RS14560 -4.1 -4.8 aspartate 1-decarboxylase compare
ABI39_RS11405 -4.0 -9.4 hypothetical protein compare
ABI39_RS11655 -3.8 -3.7 MFS transporter compare
ABI39_RS08035 -3.8 -3.7 adenylosuccinate lyase compare
ABI39_RS17160 -3.7 -3.6 VWA domain-containing protein compare
ABI39_RS02755 -3.7 -4.4 glycosyltransferase compare
ABI39_RS04690 -3.7 -10.0 biosynthetic arginine decarboxylase compare
ABI39_RS21045 -3.7 -5.9 tryptophan synthase subunit beta compare
ABI39_RS19385 -3.6 -4.7 hypothetical protein compare
ABI39_RS01735 -3.6 -9.1 acyl-CoA dehydrogenase family protein compare
ABI39_RS00090 -3.6 -6.4 HAMP domain-containing histidine kinase compare
ABI39_RS02960 -3.5 -15.2 pyrroline-5-carboxylate reductase compare
ABI39_RS04230 -3.5 -6.2 RNA polymerase factor sigma-54 compare
ABI39_RS01730 -3.5 -7.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS12415 -3.4 -7.6 biotin/lipoyl-binding protein compare
ABI39_RS19935 -3.4 -7.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12425 -3.3 -13.4 acyl-CoA carboxylase subunit beta compare
ABI39_RS14465 -3.3 -8.9 hypothetical protein compare
ABI39_RS12725 -3.2 -4.3 acetolactate synthase small subunit compare
ABI39_RS13180 -3.2 -6.5 FAD:protein FMN transferase compare
ABI39_RS11625 -3.2 -8.4 L-arabinose isomerase compare
ABI39_RS12420 -3.2 -7.3 OadG family protein compare
ABI39_RS10210 -3.1 -6.2 2-isopropylmalate synthase compare
ABI39_RS01725 -3.1 -4.8 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS14030 -3.0 -6.1 MFS transporter compare
ABI39_RS10640 -3.0 -13.8 serine dehydratase subunit alpha family protein compare
ABI39_RS22955 -3.0 -3.7 hypothetical protein compare
ABI39_RS16880 -2.9 -5.5 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS04700 -2.9 -3.4 type I DNA topoisomerase compare
ABI39_RS11670 -2.8 -3.3 molecular chaperone DnaJ compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS12770 -2.6 -3.5 hypothetical protein compare
ABI39_RS16695 -2.6 -9.8 carbon-nitrogen hydrolase compare
ABI39_RS06010 -2.6 -10.4 polysaccharide deacetylase family protein compare
ABI39_RS17150 -2.5 -4.4 hypothetical protein compare
ABI39_RS10870 -2.5 -11.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS04885 -2.5 -5.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS00095 -2.5 -13.8 elongation factor G compare
ABI39_RS21050 -2.5 -5.6 anthranilate synthase component I family protein compare
ABI39_RS15410 -2.4 -6.1 DUF4296 domain-containing protein compare
ABI39_RS15665 -2.4 -7.3 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS17420 -2.3 -8.0 serine hydroxymethyltransferase compare
ABI39_RS13835 -2.3 -2.5 DUF3037 domain-containing protein compare
ABI39_RS18740 -2.3 -6.5 ATP-binding protein compare
ABI39_RS20085 -2.3 -5.7 electron transport complex subunit E compare
ABI39_RS04730 -2.3 -2.5 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS09915 -2.2 -2.9 DUF5056 domain-containing protein compare
ABI39_RS09845 -2.2 -2.6 (d)CMP kinase compare
ABI39_RS19945 -2.2 -6.7 aspartate kinase compare
ABI39_RS20095 -2.2 -11.3 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12755 -2.2 -3.8 SurA N-terminal domain-containing protein compare
ABI39_RS11660 -2.2 -6.0 galactose mutarotase compare
ABI39_RS04145 -2.2 -3.0 transcription elongation factor GreA compare
ABI39_RS17175 -2.1 -6.0 tetratricopeptide repeat protein compare
ABI39_RS11545 -2.1 -7.1 hypothetical protein compare
ABI39_RS15400 -2.1 -11.4 TraR/DksA C4-type zinc finger protein compare
ABI39_RS02965 -2.1 -9.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11940 -2.0 -12.8 saccharopine dehydrogenase family protein compare
ABI39_RS07090 -2.0 -1.1 hypothetical protein compare
ABI39_RS20090 -2.0 -9.6 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS19920 -2.0 -2.4 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS09830 -2.0 -5.8 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS20100 -2.0 -7.7 electron transport complex subunit RsxC compare
ABI39_RS20080 -1.9 -9.7 electron transport complex subunit RsxA compare
ABI39_RS20105 -1.9 -7.6 Fe-S cluster domain-containing protein compare
ABI39_RS14240 -1.9 -4.1 biotin synthase BioB compare
ABI39_RS11645 -1.9 -3.1 galactose mutarotase compare
ABI39_RS04280 -1.9 -3.6 DUF4292 domain-containing protein compare
ABI39_RS15265 -1.9 -3.0 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS08230 -1.9 -9.8 MFS transporter compare
ABI39_RS09685 -1.8 -2.7 hypothetical protein compare
ABI39_RS04930 -1.8 -4.3 helix-turn-helix transcriptional regulator compare
ABI39_RS05175 -1.8 -5.5 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS02480 -1.8 -3.8 DJ-1/PfpI family protein compare
ABI39_RS13000 -1.8 -4.4 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS17730 -1.7 -10.5 carboxynorspermidine decarboxylase compare
ABI39_RS01300 -1.7 -10.8 NADP-specific glutamate dehydrogenase compare
ABI39_RS18910 -1.7 -1.7 preprotein translocase subunit YajC compare
ABI39_RS10085 -1.7 -3.8 enoyl-ACP reductase compare
ABI39_RS09195 -1.7 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS12430 -1.6 -1.5 methylmalonyl-CoA epimerase compare
ABI39_RS11640 -1.6 -4.3 sodium:solute symporter compare
ABI39_RS06380 -1.6 -5.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS16460 -1.6 -8.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS21190 -1.6 -2.9 dihydrodipicolinate synthase family protein compare
ABI39_RS11350 -1.6 -6.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS08240 -1.6 -11.4 substrate-binding domain-containing protein compare
ABI39_RS14245 -1.6 -11.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS14255 -1.5 -5.6 DUF452 family protein compare
ABI39_RS04970 -1.5 -4.0 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS12670 -1.5 -5.6 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS14250 -1.5 -6.7 8-amino-7-oxononanoate synthase compare
ABI39_RS15515 -1.5 -7.9 precorrin-4 C(11)-methyltransferase compare
ABI39_RS16885 -1.4 -2.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS15650 -1.4 -7.7 cobyrinate a,c-diamide synthase compare
ABI39_RS14265 -1.4 -7.2 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS15660 -1.4 -8.3 cobyric acid synthase compare
ABI39_RS08205 -1.4 -5.8 diaminopimelate dehydrogenase compare
ABI39_RS00410 -1.4 -3.1 response regulator compare
ABI39_RS09775 -1.4 -9.6 magnesium transporter compare
ABI39_RS02490 -1.4 -4.4 biopolymer transporter ExbD compare
ABI39_RS12810 -1.4 -3.4 hypothetical protein compare
ABI39_RS18920 -1.4 -4.2 PUR family DNA/RNA-binding protein compare
ABI39_RS15670 -1.4 -5.7 cobalamin biosynthesis protein CobD compare
ABI39_RS07000 -1.4 -2.6 site-specific tyrosine recombinase XerD compare
ABI39_RS15525 -1.3 -6.5 precorrin-3B C(17)-methyltransferase compare
ABI39_RS16450 -1.3 -4.6 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS16870 -1.3 -3.5 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS16040 -1.3 -1.2 hypothetical protein compare
ABI39_RS03320 -1.3 -8.2 FecR domain-containing protein compare
ABI39_RS02285 -1.3 -2.4 DNA mismatch repair endonuclease MutL compare
ABI39_RS00240 -1.3 -3.7 NigD-like N-terminal domain-containing protein compare
ABI39_RS06050 -1.3 -3.3 hypothetical protein compare
ABI39_RS08850 -1.3 -3.3 toprim domain-containing protein compare
ABI39_RS16875 -1.3 -3.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS16700 -1.3 -5.2 agmatine deiminase family protein compare
ABI39_RS15505 -1.3 -6.7 ABC transporter ATP-binding protein compare
ABI39_RS15490 -1.3 -6.3 precorrin-2 C(20)-methyltransferase compare
ABI39_RS15495 -1.3 -6.5 ABC transporter substrate-binding protein compare
ABI39_RS16455 -1.3 -6.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS15610 -1.3 -1.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS04510 -1.2 -2.4 GntR family transcriptional regulator compare
ABI39_RS17195 -1.2 -7.2 hypothetical protein compare
ABI39_RS14715 -1.2 -4.3 RidA family protein compare
ABI39_RS15510 -1.2 -5.2 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS16895 -1.2 -2.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS09670 -1.2 -1.5 cardiolipin synthase compare
ABI39_RS15320 -1.2 -6.8 PorT family protein compare
ABI39_RS18320 -1.2 -1.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Arabinose in Phocaeicola dorei CL03T12C01

For carbon source D-Arabinose across organisms