Experiment set1S45 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.1 -17.5 Pca regulon regulatory protein compare
MPMX19_02980 -3.1 -3.6 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_05680 -3.0 -5.0 Cell cycle response regulator CtrA compare
MPMX19_00705 -2.8 -2.8 Cell division coordinator CpoB compare
MPMX19_05044 -2.8 -3.3 hypothetical protein compare
MPMX19_04114 -2.8 -6.8 hypothetical protein compare
MPMX19_04112 -2.3 -5.1 hypothetical protein compare
MPMX19_02267 -2.3 -1.5 hypothetical protein compare
MPMX19_01053 -2.2 -5.1 Dihydroorotase compare
MPMX19_01054 -2.1 -6.9 Aspartate carbamoyltransferase compare
MPMX19_02268 -2.0 -3.8 hypothetical protein compare
MPMX19_01560 -1.8 -2.5 3'-5' exonuclease DinG compare
MPMX19_00128 -1.8 -11.5 hypothetical protein compare
MPMX19_02658 -1.8 -11.6 Glutamate synthase [NADPH] small chain compare
MPMX19_02657 -1.8 -14.5 Glutamate synthase [NADPH] large chain compare
MPMX19_06090 -1.7 -2.9 Pyruvate dehydrogenase complex repressor compare
MPMX19_00319 -1.7 -2.0 hypothetical protein compare
MPMX19_02543 -1.7 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_04208 -1.7 -4.6 flagellum biosynthesis repressor protein FlbT compare
MPMX19_06547 -1.6 -6.8 hypothetical protein compare
MPMX19_05678 -1.6 -6.7 hypothetical protein compare
MPMX19_04008 -1.6 -2.8 Beta-peptidyl aminopeptidase BapA compare
MPMX19_04093 -1.5 -4.5 hypothetical protein compare
MPMX19_04000 -1.5 -3.8 Flagellar motor switch protein FliG compare
MPMX19_01545 -1.5 -1.7 Lon protease compare
MPMX19_03586 -1.5 -2.8 HTH-type transcriptional repressor ComR compare
MPMX19_04115 -1.5 -2.5 Sensor histidine kinase RcsC compare
MPMX19_00858 -1.4 -5.3 Flagellar biosynthetic protein FliP compare
MPMX19_04092 -1.4 -6.2 Flagellar motor switch protein FliN compare
MPMX19_00838 -1.4 -2.3 GTP pyrophosphokinase rsh compare
MPMX19_01495 -1.4 -1.8 hypothetical protein compare
MPMX19_00862 -1.4 -7.5 hypothetical protein compare
MPMX19_00167 -1.4 -2.1 hypothetical protein compare
MPMX19_06880 -1.4 -2.8 Validamycin A dioxygenase compare
MPMX19_00503 -1.4 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_00530 -1.3 -3.4 Orotate phosphoribosyltransferase compare
MPMX19_05679 -1.3 -7.9 Flagellum-specific ATP synthase compare
MPMX19_04681 -1.3 -2.0 5-hydroxyisourate hydrolase compare
MPMX19_00866 -1.3 -6.5 Flagellar biosynthetic protein FliR compare
MPMX19_01483 -1.3 -8.8 Flagellar basal-body rod protein FlgG compare
MPMX19_01585 -1.3 -2.7 Zinc uptake regulation protein compare
MPMX19_01918 -1.3 -1.5 tRNA-Ala compare
MPMX19_04409 -1.3 -3.1 hypothetical protein compare
MPMX19_03048 -1.3 -2.6 hypothetical protein compare
MPMX19_01484 -1.3 -6.0 Flagellar basal-body rod protein FlgG compare
MPMX19_00260 -1.2 -1.8 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00863 -1.2 -6.7 Flagellar basal-body rod protein FlgC compare
MPMX19_03976 -1.2 -3.9 hypothetical protein compare
MPMX19_02320 -1.2 -1.7 HTH-type transcriptional regulator GltR compare
MPMX19_01883 -1.2 -5.6 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_03552 -1.2 -2.8 hypothetical protein compare
MPMX19_05727 -1.2 -5.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_00714 -1.2 -5.8 Ferrous-iron efflux pump FieF compare
MPMX19_01630 -1.2 -3.7 Phosphoribosylamine--glycine ligase compare
MPMX19_06014 -1.2 -6.0 Histidinol-phosphate aminotransferase compare
MPMX19_04087 -1.2 -3.3 Flagellum site-determining protein YlxH compare
MPMX19_05996 -1.1 -2.4 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_03734 -1.1 -2.0 RutC family protein YjgH compare
MPMX19_01714 -1.1 -1.8 tRNA-modifying protein YgfZ compare
MPMX19_01304 -1.1 -6.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_03609 -1.1 -2.8 HTH-type transcriptional repressor NagR compare
MPMX19_05831 -1.1 -2.9 Protein/nucleic acid deglycase 2 compare
MPMX19_03276 -1.1 -3.2 hypothetical protein compare
MPMX19_00867 -1.1 -8.6 Flagellar biosynthetic protein FlhB compare
MPMX19_02674 -1.1 -1.8 NADH:quinone reductase compare
MPMX19_02675 -1.1 -8.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_04466 -1.1 -3.0 hypothetical protein compare
MPMX19_04222 -1.1 -8.4 hypothetical protein compare
MPMX19_04958 -1.1 -2.3 Methyl-accepting chemotaxis protein compare
MPMX19_01015 -1.1 -4.2 Anthranilate phosphoribosyltransferase compare
MPMX19_02937 -1.1 -1.1 hypothetical protein compare
MPMX19_00050 -1.1 -3.7 Pyridoxal phosphate homeostasis protein compare
MPMX19_02466 -1.0 -2.3 Octopine permease ATP-binding protein P compare
MPMX19_00182 -1.0 -2.0 hypothetical protein compare
MPMX19_01014 -1.0 -3.8 Indole-3-glycerol phosphate synthase compare
MPMX19_03722 -1.0 -1.9 hypothetical protein compare
MPMX19_02613 -1.0 -1.8 hypothetical protein compare
MPMX19_04094 -1.0 -6.1 Flagellar M-ring protein compare
MPMX19_04089 -1.0 -7.4 Flagellar biosynthesis protein FlhA compare
MPMX19_03367 -1.0 -2.2 Magnetosome membrane protein 22 compare
MPMX19_00311 -1.0 -8.3 hypothetical protein compare
MPMX19_00906 -1.0 -7.1 Amidophosphoribosyltransferase compare
MPMX19_01247 -1.0 -1.5 Transcriptional regulatory protein DegU compare
MPMX19_03193 -1.0 -4.2 hypothetical protein compare
MPMX19_06546 -0.9 -2.4 hypothetical protein compare
MPMX19_06202 -0.9 -1.9 hypothetical protein compare
MPMX19_04206 -0.9 -3.5 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_05314 -0.9 -2.2 hypothetical protein compare
MPMX19_05686 -0.9 -2.6 Chemotaxis protein CheY compare
MPMX19_00139 -0.9 -3.4 hypothetical protein compare
MPMX19_00266 -0.9 -2.1 hypothetical protein compare
MPMX19_00854 -0.9 -8.1 hypothetical protein compare
MPMX19_00846 -0.9 -2.1 hypothetical protein compare
MPMX19_03007 -0.9 -2.6 Arabinose import ATP-binding protein AraG compare
MPMX19_01395 -0.9 -1.7 hypothetical protein compare
MPMX19_04610 -0.9 -2.3 putative enoyl-CoA hydratase 1 compare
MPMX19_00304 -0.9 -2.3 Phosphatidylcholine synthase compare
MPMX19_00344 -0.9 -2.1 hypothetical protein compare
MPMX19_05388 -0.9 -2.4 Leucine-responsive regulatory protein compare
MPMX19_02803 -0.9 -1.9 putative FAD-linked oxidoreductase compare
MPMX19_01497 -0.9 -2.7 hypothetical protein compare
MPMX19_00864 -0.9 -3.2 Flagellar hook-basal body complex protein FliE compare
MPMX19_01084 -0.9 -2.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_03787 -0.9 -1.2 hypothetical protein compare
MPMX19_06644 -0.9 -7.5 GDP-mannose 4,6-dehydratase compare
MPMX19_01955 -0.9 -1.4 Putative anti-sigma factor antagonist compare
MPMX19_04276 -0.8 -2.1 hypothetical protein compare
MPMX19_06734 -0.8 -7.3 Alginate biosynthesis protein AlgA compare
MPMX19_04952 -0.8 -1.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01400 -0.8 -2.3 hypothetical protein compare
MPMX19_00020 -0.8 -1.3 hypothetical protein compare
MPMX19_03496 -0.8 -2.3 Protein FdhE compare
MPMX19_01485 -0.8 -6.1 hypothetical protein compare
MPMX19_06084 -0.8 -2.2 Transcriptional regulatory protein LnrK compare
MPMX19_04326 -0.8 -2.9 Beta-hexosaminidase compare
MPMX19_04362 -0.8 -1.5 Cytidine deaminase compare
MPMX19_06577 -0.8 -5.4 hypothetical protein compare
MPMX19_03929 -0.8 -2.4 hypothetical protein compare
MPMX19_05989 -0.8 -2.0 HTH-type transcriptional regulator HdfR compare
MPMX19_05143 -0.8 -1.6 hypothetical protein compare
MPMX19_06334 -0.8 -2.4 Arsenite oxidase subunit AioB compare
MPMX19_04199 -0.8 -4.7 Pseudaminic acid synthase compare
MPMX19_01917 -0.8 -2.2 hypothetical protein compare
MPMX19_04953 -0.8 -2.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04207 -0.8 -2.5 hypothetical protein compare
MPMX19_05119 -0.8 -5.8 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_04200 -0.8 -3.9 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_05714 -0.8 -4.3 hypothetical protein compare
MPMX19_05162 -0.8 -2.1 Ferrous-iron efflux pump FieF compare
MPMX19_06967 -0.8 -0.9 hypothetical protein compare
MPMX19_00976 -0.8 -1.7 ATP-dependent RNA helicase RhlE compare
MPMX19_00608 -0.7 -0.9 hypothetical protein compare
MPMX19_01487 -0.7 -2.3 hypothetical protein compare
MPMX19_00860 -0.7 -2.0 hypothetical protein compare
MPMX19_02136 -0.7 -1.2 Phage shock protein A compare
MPMX19_05818 -0.7 -1.7 hypothetical protein compare
MPMX19_03195 -0.7 -1.5 hypothetical protein compare
MPMX19_00236 -0.7 -2.1 HTH-type transcriptional regulator IscR compare
MPMX19_00849 -0.7 -2.1 hypothetical protein compare
MPMX19_04622 -0.7 -4.6 hypothetical protein compare
MPMX19_04218 -0.7 -3.3 Protein phosphatase PrpC compare
MPMX19_05355 -0.7 -2.5 Transcriptional regulator SlyA compare
MPMX19_05725 -0.7 -1.3 hypothetical protein compare
MPMX19_03165 -0.7 -1.7 hypothetical protein compare
MPMX19_01939 -0.7 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_01822 -0.7 -3.4 2-isopropylmalate synthase compare
MPMX19_03803 -0.7 -1.7 hypothetical protein compare
MPMX19_05445 -0.7 -2.1 tRNA-Glu compare
MPMX19_01494 -0.7 -3.9 Flagellar P-ring protein compare
MPMX19_05825 -0.7 -1.9 hypothetical protein compare
MPMX19_01314 -0.7 -3.0 hypothetical protein compare
MPMX19_06111 -0.7 -3.1 Non-motile and phage-resistance protein compare
MPMX19_04623 -0.7 -2.3 hypothetical protein compare
MPMX19_01884 -0.7 -1.9 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_06545 -0.7 -5.8 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_02303 -0.7 -1.3 hypothetical protein compare
MPMX19_00427 -0.7 -2.5 hypothetical protein compare
MPMX19_06271 -0.7 -4.5 hypothetical protein compare
MPMX19_00429 -0.7 -2.2 hypothetical protein compare
MPMX19_06579 -0.7 -1.8 Carnitine monooxygenase oxygenase subunit compare
MPMX19_00680 -0.7 -1.5 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_00159 -0.6 -2.8 hypothetical protein compare
MPMX19_00794 -0.6 -1.9 Transcriptional activator protein CopR compare
MPMX19_06985 -0.6 -1.1 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_03096 -0.6 -1.5 hypothetical protein compare
MPMX19_05982 -0.6 -1.8 hypothetical protein compare
MPMX19_04531 -0.6 -1.9 hypothetical protein compare
MPMX19_04554 -0.6 -2.2 Response regulator PleD compare
MPMX19_02392 -0.6 -5.3 Aspartate/prephenate aminotransferase compare
MPMX19_00173 -0.6 -1.6 hypothetical protein compare
MPMX19_04835 -0.6 -1.2 hypothetical protein compare
MPMX19_03975 -0.6 -2.3 Putative thiosulfate sulfurtransferase compare
MPMX19_01777 -0.6 -1.9 2-aminoadipate transaminase compare
MPMX19_02981 -0.6 -2.3 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_06544 -0.6 -5.0 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_01718 -0.6 -1.4 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_04119 -0.6 -1.9 hypothetical protein compare
MPMX19_02235 -0.6 -2.1 tRNA-Ala compare
MPMX19_05070 -0.6 -3.0 hypothetical protein compare
MPMX19_04950 -0.6 -2.5 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_00841 -0.6 -1.2 Holo-[acyl-carrier-protein] synthase compare
MPMX19_05448 -0.6 -1.9 DNA-invertase hin compare
MPMX19_00263 -0.6 -1.6 hypothetical protein compare
MPMX19_01297 -0.6 -1.3 hypothetical protein compare
MPMX19_05430 -0.6 -1.7 HTH-type transcriptional regulator DmlR compare
MPMX19_05796 -0.6 -1.9 HTH-type transcriptional repressor BdcR compare
MPMX19_00144 -0.6 -2.3 hypothetical protein compare
MPMX19_01748 -0.6 -1.3 hypothetical protein compare
MPMX19_05921 -0.6 -1.4 hypothetical protein compare
MPMX19_00148 -0.6 -1.0 hypothetical protein compare
MPMX19_05144 -0.6 -1.5 hypothetical protein compare
MPMX19_00904 -0.6 -3.7 DNA repair protein RadA compare
MPMX19_00145 -0.6 -3.1 DNA adenine methyltransferase YhdJ compare
MPMX19_03491 -0.6 -1.2 putative FAD-linked oxidoreductase compare
MPMX19_03342 -0.6 -1.4 hypothetical protein compare
MPMX19_02218 -0.6 -1.1 hypothetical protein compare
MPMX19_01075 -0.6 -1.3 Molybdopterin synthase sulfur carrier subunit compare
MPMX19_01113 -0.6 -1.4 Adaptive-response sensory-kinase SasA compare
MPMX19_04009 -0.6 -2.8 D-aminopeptidase compare
MPMX19_00061 -0.6 -1.4 L-lysine 2,3-aminomutase compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms