Experiment set1S45 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_02279 +1.2 5.1 hypothetical protein compare
MPMX19_06610 +1.1 2.5 hypothetical protein compare
MPMX19_01050 +1.0 1.9 hypothetical protein compare
MPMX19_01059 +1.0 1.5 hypothetical protein compare
MPMX19_01423 +0.9 2.7 hypothetical protein compare
MPMX19_06197 +0.8 1.9 hypothetical protein compare
MPMX19_03728 +0.8 2.0 hypothetical protein compare
MPMX19_04791 +0.8 1.6 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_00046 +0.7 2.4 hypothetical protein compare
MPMX19_02816 +0.7 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06460 +0.7 2.0 DNA-invertase hin compare
MPMX19_06917 +0.7 2.7 HTH-type transcriptional regulator PgrR compare
MPMX19_02806 +0.7 1.4 HTH-type transcriptional regulator DmlR compare
MPMX19_01617 +0.7 1.6 hypothetical protein compare
MPMX19_04638 +0.7 1.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05575 +0.7 2.6 hypothetical protein compare
MPMX19_01864 +0.7 1.4 Regulatory protein AtoC compare
MPMX19_03123 +0.7 1.6 Citrate lyase acyl carrier protein compare
MPMX19_06456 +0.7 1.2 hypothetical protein compare
MPMX19_02866 +0.7 2.9 4-hydroxymandelate oxidase compare
MPMX19_06207 +0.6 2.5 hypothetical protein compare
MPMX19_01153 +0.6 2.5 hypothetical protein compare
MPMX19_01249 +0.6 1.6 Periplasmic serine endoprotease DegP compare
MPMX19_03916 +0.6 1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_02181 +0.6 2.1 hypothetical protein compare
MPMX19_03868 +0.6 2.6 Xylitol-binding protein compare
MPMX19_02660 +0.6 1.8 Inner membrane protein YbjJ compare
MPMX19_00212 +0.6 5.0 Nitrogen fixation regulation protein FixK compare
MPMX19_03710 +0.6 2.6 Glycine cleavage system transcriptional activator compare
MPMX19_03039 +0.6 2.0 Cyclic AMP receptor protein compare
MPMX19_03262 +0.6 1.9 putative HTH-type transcriptional repressor ExuR compare
MPMX19_06907 +0.6 2.3 L-talarate/galactarate dehydratase compare
MPMX19_04095 +0.6 2.0 hypothetical protein compare
MPMX19_04271 +0.5 1.6 Response regulator rcp1 compare
MPMX19_03846 +0.5 1.8 hypothetical protein compare
MPMX19_01508 +0.5 2.3 hypothetical protein compare
MPMX19_02116 +0.5 1.3 Cold shock protein CspA compare
MPMX19_04913 +0.5 1.2 hypothetical protein compare
MPMX19_06804 +0.5 1.2 hypothetical protein compare
MPMX19_04449 +0.5 0.8 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_01789 +0.5 1.3 Urease subunit beta compare
MPMX19_03959 +0.5 1.5 hypothetical protein compare
MPMX19_06471 +0.5 2.5 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03109 +0.5 1.8 hypothetical protein compare
MPMX19_01790 +0.5 2.1 Urease subunit gamma 1 compare
MPMX19_05139 +0.5 2.0 CRISPR-associated endoribonuclease Cas2 compare
MPMX19_03073 +0.5 1.5 hypothetical protein compare
MPMX19_06044 +0.5 1.4 hypothetical protein compare
MPMX19_03141 +0.5 1.3 hypothetical protein compare
MPMX19_05762 +0.5 1.5 hypothetical protein compare
MPMX19_04551 +0.5 0.6 HTH-type transcriptional repressor RspR compare
MPMX19_02123 +0.5 2.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MPMX19_03883 +0.5 2.0 hypothetical protein compare
MPMX19_01421 +0.5 1.2 hypothetical protein compare
MPMX19_00822 +0.5 3.1 Divalent metal cation transporter MntH compare
MPMX19_05193 +0.5 1.3 Taurine-binding periplasmic protein compare
MPMX19_04579 +0.5 2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_03784 +0.5 1.4 hypothetical protein compare
MPMX19_05364 +0.5 2.3 Acetate CoA-transferase subunit beta compare
MPMX19_06765 +0.5 1.1 Hydrogen peroxide-inducible genes activator compare
MPMX19_02402 +0.5 0.6 hypothetical protein compare
MPMX19_05622 +0.5 3.8 Sensor histidine kinase RegB compare
MPMX19_06746 +0.5 0.6 Chemotaxis protein CheW compare
MPMX19_02875 +0.5 1.6 hypothetical protein compare
MPMX19_04458 +0.5 1.5 2-hydroxy-3-oxopropionate reductase compare
MPMX19_06513 +0.5 2.7 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_04743 +0.5 1.6 Formyltransferase/hydrolase complex subunit D compare
MPMX19_05231 +0.5 2.4 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_00204 +0.5 1.1 hypothetical protein compare
MPMX19_00956 +0.5 2.0 hypothetical protein compare
MPMX19_00887 +0.5 1.4 hypothetical protein compare
MPMX19_03281 +0.5 1.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06272 +0.5 0.5 hypothetical protein compare
MPMX19_03816 +0.5 1.0 hypothetical protein compare
MPMX19_06405 +0.5 2.7 hypothetical protein compare
MPMX19_04670 +0.4 2.1 hypothetical protein compare
MPMX19_01729 +0.4 1.0 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_05850 +0.4 1.2 hypothetical protein compare
MPMX19_01445 +0.4 1.9 hypothetical protein compare
MPMX19_03752 +0.4 1.1 hypothetical protein compare
MPMX19_03613 +0.4 1.5 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_02811 +0.4 1.9 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_05191 +0.4 2.4 Phenylacetate-coenzyme A ligase compare
MPMX19_05895 +0.4 2.0 hypothetical protein compare
MPMX19_03558 +0.4 1.7 hypothetical protein compare
MPMX19_06539 +0.4 1.0 hypothetical protein compare
MPMX19_03088 +0.4 2.4 putative RNA polymerase sigma factor FecI compare
MPMX19_03934 +0.4 1.1 hypothetical protein compare
MPMX19_05013 +0.4 2.1 Cytochrome b compare
MPMX19_05005 +0.4 1.7 hypothetical protein compare
MPMX19_05043 +0.4 2.3 hypothetical protein compare
MPMX19_06853 +0.4 1.3 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03655 +0.4 1.0 hypothetical protein compare
MPMX19_06661 +0.4 2.2 hypothetical protein compare
MPMX19_05026 +0.4 3.0 hypothetical protein compare
MPMX19_05496 +0.4 1.8 hypothetical protein compare
MPMX19_01479 +0.4 2.3 hypothetical protein compare
MPMX19_00112 +0.4 1.5 Multidrug transporter EmrE compare
MPMX19_05878 +0.4 2.1 L-cystine-binding protein FliY compare
MPMX19_04393 +0.4 1.2 hypothetical protein compare
MPMX19_03757 +0.4 1.3 D-ribose pyranase compare
MPMX19_03087 +0.4 1.6 Protein FecR compare
MPMX19_02063 +0.4 1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05031 +0.4 2.5 ATP synthase gamma chain compare
MPMX19_04633 +0.4 1.7 hypothetical protein compare
MPMX19_05190 +0.4 1.7 putative malonic semialdehyde reductase RutE compare
MPMX19_03507 +0.4 1.9 hypothetical protein compare
MPMX19_06520 +0.4 1.1 Nitrate import ATP-binding protein NrtC compare
MPMX19_00211 +0.4 1.6 putative copper-importing P-type ATPase A compare
MPMX19_06156 +0.4 1.2 hypothetical protein compare
MPMX19_06464 +0.4 1.5 Tryptophan synthase beta chain compare
MPMX19_04051 +0.4 1.6 Alcohol dehydrogenase compare
MPMX19_05623 +0.4 1.9 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_06027 +0.4 1.6 hypothetical protein compare
MPMX19_06269 +0.4 2.3 IS110 family transposase ISHne4 compare
MPMX19_00225 +0.4 2.3 hypothetical protein compare
MPMX19_00015 +0.4 1.2 hypothetical protein compare
MPMX19_05203 +0.4 1.4 hypothetical protein compare
MPMX19_01755 +0.4 1.5 hypothetical protein compare
MPMX19_05342 +0.4 1.7 hypothetical protein compare
MPMX19_04680 +0.4 1.0 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_05554 +0.4 1.7 hypothetical protein compare
MPMX19_00923 +0.4 1.3 hypothetical protein compare
MPMX19_02761 +0.4 2.4 hypothetical protein compare
MPMX19_04522 +0.4 1.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05578 +0.4 2.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04640 +0.4 1.8 hypothetical protein compare
MPMX19_01367 +0.4 1.3 Protein YhfA compare
MPMX19_05234 +0.4 1.7 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_02745 +0.4 1.2 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
MPMX19_01083 +0.4 1.5 hypothetical protein compare
MPMX19_03550 +0.4 2.1 HTH-type transcriptional regulator DmlR compare
MPMX19_04738 +0.4 1.3 hypothetical protein compare
MPMX19_05606 +0.4 1.0 hypothetical protein compare
MPMX19_01110 +0.4 2.7 tRNA-dihydrouridine synthase B compare
MPMX19_05324 +0.4 2.5 hypothetical protein compare
MPMX19_06737 +0.4 1.5 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_03636 +0.4 1.6 Octopine permease ATP-binding protein P compare
MPMX19_06924 +0.4 1.4 hypothetical protein compare
MPMX19_02127 +0.4 2.5 hypothetical protein compare
MPMX19_04267 +0.4 1.6 hypothetical protein compare
MPMX19_03549 +0.4 1.4 HTH-type transcriptional regulator PgrR compare
MPMX19_03891 +0.4 1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06646 +0.4 2.0 hypothetical protein compare
MPMX19_03547 +0.4 1.4 putative oxidoreductase compare
MPMX19_04711 +0.4 1.8 Formyltetrahydrofolate deformylase compare
MPMX19_06327 +0.4 0.9 hypothetical protein compare
MPMX19_06299 +0.4 2.0 hypothetical protein compare
MPMX19_04985 +0.4 0.7 HTH-type transcriptional regulator DmlR compare
MPMX19_04635 +0.4 1.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_01596 +0.4 1.7 hypothetical protein compare
MPMX19_02735 +0.4 0.7 Sensor histidine kinase RcsC compare
MPMX19_01609 +0.4 1.0 hypothetical protein compare
MPMX19_00632 +0.4 1.3 Intermembrane phospholipid transport system binding protein MlaC compare
MPMX19_06146 +0.4 1.3 hypothetical protein compare
MPMX19_06770 +0.3 2.0 NAD-dependent glycerol dehydrogenase compare
MPMX19_03081 +0.3 1.1 Protein FecR compare
MPMX19_04629 +0.3 2.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_03234 +0.3 2.0 hypothetical protein compare
MPMX19_05036 +0.3 2.0 hypothetical protein compare
MPMX19_06385 +0.3 1.4 hypothetical protein compare
MPMX19_06691 +0.3 1.6 hypothetical protein compare
MPMX19_03866 +0.3 0.9 Ribose import permease protein RbsC compare
MPMX19_06789 +0.3 1.0 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX19_02381 +0.3 2.0 hypothetical protein compare
MPMX19_04082 +0.3 2.0 hypothetical protein compare
MPMX19_03735 +0.3 1.0 Transposon Tn10 TetC protein compare
MPMX19_04226 +0.3 1.6 hypothetical protein compare
MPMX19_05618 +0.3 1.3 putative manganese efflux pump MntP compare
MPMX19_00716 +0.3 2.2 Hydrogenase maturation factor HypD compare
MPMX19_03230 +0.3 1.8 hypothetical protein compare
MPMX19_04262 +0.3 1.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06876 +0.3 1.2 Inner membrane amino-acid ABC transporter permease protein YhdY compare
MPMX19_06482 +0.3 1.7 3-mercaptopropionate dioxygenase compare
MPMX19_05207 +0.3 0.7 Hemolysin secretion protein D, plasmid compare
MPMX19_05930 +0.3 1.2 Dipeptidyl-peptidase 6 compare
MPMX19_04668 +0.3 1.0 HTH-type transcriptional regulator DmlR compare
MPMX19_06340 +0.3 1.2 hypothetical protein compare
MPMX19_02822 +0.3 2.1 HTH-type transcriptional regulator ArgP compare
MPMX19_01101 +0.3 0.9 hypothetical protein compare
MPMX19_04609 +0.3 1.5 Putative short-chain type dehydrogenase/reductase compare
MPMX19_03963 +0.3 1.8 hypothetical protein compare
MPMX19_06839 +0.3 2.4 Glutathione import ATP-binding protein GsiA compare
MPMX19_06519 +0.3 0.5 HTH-type transcriptional repressor NagR compare
MPMX19_05505 +0.3 0.6 Leucine-responsive regulatory protein compare
MPMX19_04118 +0.3 1.1 Sensor histidine kinase RcsC compare
MPMX19_01431 +0.3 2.1 Sensor histidine kinase RcsC compare
MPMX19_06515 +0.3 1.3 hypothetical protein compare
MPMX19_01696 +0.3 1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
MPMX19_00699 +0.3 2.1 Acyl-CoA thioesterase YbgC compare
MPMX19_00287 +0.3 2.3 hypothetical protein compare
MPMX19_03716 +0.3 1.4 hypothetical protein compare
MPMX19_01451 +0.3 1.9 Regulator of RpoS compare
MPMX19_05918 +0.3 1.6 Flagellar biosynthetic protein FliP compare
MPMX19_06144 +0.3 1.0 hypothetical protein compare
MPMX19_01866 +0.3 1.2 Sulfur carrier protein CysO compare
MPMX19_02420 +0.3 1.9 hypothetical protein compare
MPMX19_06089 +0.3 2.0 Regulatory protein LuxO compare
MPMX19_06484 +0.3 2.1 hypothetical protein compare
MPMX19_04678 +0.3 1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms