Experiment set1S446 for Phocaeicola dorei CL03T12C01

Compare to:

Galactan from Potato carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -8.3 -4.6 acetylornithine carbamoyltransferase compare
ABI39_RS02980 -8.3 -5.2 N-acetyltransferase compare
ABI39_RS07095 -7.8 -14.9 argininosuccinate lyase compare
ABI39_RS07790 -7.7 -5.5 M20 family metallo-hydrolase compare
ABI39_RS04695 -7.2 -3.8 shikimate kinase compare
ABI39_RS21065 -7.0 -5.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02975 -6.9 -8.0 argininosuccinate synthase compare
ABI39_RS02970 -6.9 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS12645 -6.8 -9.3 chorismate synthase compare
ABI39_RS10430 -6.8 -10.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS21060 -6.6 -6.8 anthranilate phosphoribosyltransferase compare
ABI39_RS16910 -6.6 -8.8 3-phosphoglycerate dehydrogenase compare
ABI39_RS21050 -6.6 -5.9 anthranilate synthase component I family protein compare
ABI39_RS02880 -6.5 -7.8 glutamate 5-kinase compare
ABI39_RS04690 -6.5 -12.7 biosynthetic arginine decarboxylase compare
ABI39_RS10510 -6.4 -6.4 prephenate dehydratase compare
ABI39_RS10260 -6.3 -8.5 adenylosuccinate synthase compare
ABI39_RS11830 -5.9 -3.1 ATP phosphoribosyltransferase compare
ABI39_RS02315 -5.8 -4.0 IMP dehydrogenase compare
ABI39_RS02960 -5.8 -9.3 pyrroline-5-carboxylate reductase compare
ABI39_RS12665 -5.7 -3.9 shikimate dehydrogenase compare
ABI39_RS16905 -5.7 -11.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS15380 -5.6 -2.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS11835 -5.6 -4.9 histidinol dehydrogenase compare
ABI39_RS02875 -5.5 -8.5 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10435 -5.5 -8.7 cofactor-independent phosphoglycerate mutase compare
ABI39_RS07005 -5.5 -3.2 type II 3-dehydroquinate dehydratase compare
ABI39_RS10495 -5.4 -5.7 prephenate dehydrogenase compare
ABI39_RS04245 -5.4 -1.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS12675 -5.3 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS10110 -5.3 -7.3 S9 family peptidase compare
ABI39_RS12715 -5.3 -11.0 dihydroxy-acid dehydratase compare
ABI39_RS02140 -5.2 -1.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS05660 -5.2 -7.7 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11845 -5.2 -6.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04685 -5.1 -4.6 acetylglutamate kinase compare
ABI39_RS12735 -5.1 -7.9 ketol-acid reductoisomerase compare
ABI39_RS10440 -5.1 -6.5 threonine synthase compare
ABI39_RS00770 -5.1 -11.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10500 -5.1 -4.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS00475 -5.0 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19385 -5.0 -2.2 hypothetical protein compare
ABI39_RS06675 -5.0 -6.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS21075 -4.9 -4.8 tryptophan synthase subunit alpha compare
ABI39_RS19930 -4.8 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10505 -4.7 -9.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS15365 -4.7 -2.7 altronate dehydratase compare
ABI39_RS00405 -4.7 -15.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS19925 -4.7 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS08195 -4.6 -5.1 hypothetical protein compare
ABI39_RS20080 -4.5 -6.4 electron transport complex subunit RsxA compare
ABI39_RS06055 -4.5 -6.6 phosphoribosylamine--glycine ligase compare
ABI39_RS12720 -4.4 -12.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS20095 -4.4 -9.8 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS20100 -4.4 -8.1 electron transport complex subunit RsxC compare
ABI39_RS10205 -4.4 -4.3 3-isopropylmalate dehydratase small subunit compare
ABI39_RS15475 -4.3 -7.9 glucuronate isomerase compare
ABI39_RS11840 -4.3 -4.8 histidinol-phosphate transaminase compare
ABI39_RS06010 -4.3 -5.9 polysaccharide deacetylase family protein compare
ABI39_RS13185 -4.2 -1.5 manganese efflux pump compare
ABI39_RS04795 -4.2 -1.5 M28 family peptidase compare
ABI39_RS20105 -4.2 -5.5 Fe-S cluster domain-containing protein compare
ABI39_RS12425 -4.1 -9.5 acyl-CoA carboxylase subunit beta compare
ABI39_RS21045 -4.1 -5.2 tryptophan synthase subunit beta compare
ABI39_RS06670 -4.1 -13.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS18330 -4.1 -9.2 PD40 domain-containing protein compare
ABI39_RS06995 -4.0 -6.6 tetratricopeptide repeat protein compare
ABI39_RS15480 -4.0 -5.6 tagaturonate reductase compare
ABI39_RS10195 -4.0 -7.4 2-isopropylmalate synthase compare
ABI39_RS20085 -4.0 -6.8 electron transport complex subunit E compare
ABI39_RS20070 -4.0 -4.7 UDP-glucose 4-epimerase GalE compare
ABI39_RS10210 -3.9 -8.3 2-isopropylmalate synthase compare
ABI39_RS18745 -3.9 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS11650 -3.9 -7.5 galactokinase compare
ABI39_RS10215 -3.9 -11.4 3-isopropylmalate dehydrogenase compare
ABI39_RS15375 -3.9 -8.8 sugar kinase compare
ABI39_RS17195 -3.7 -9.9 hypothetical protein compare
ABI39_RS15410 -3.7 -4.8 DUF4296 domain-containing protein compare
ABI39_RS10200 -3.7 -11.1 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02290 -3.6 -2.3 hypothetical protein compare
ABI39_RS08305 -3.6 -5.8 DUF4831 family protein compare
ABI39_RS14560 -3.5 -2.7 aspartate 1-decarboxylase compare
ABI39_RS15415 -3.5 -4.5 hypothetical protein compare
ABI39_RS09770 -3.5 -4.4 DUF349 domain-containing protein compare
ABI39_RS13180 -3.5 -3.4 FAD:protein FMN transferase compare
ABI39_RS17175 -3.4 -4.1 tetratricopeptide repeat protein compare
ABI39_RS01360 -3.4 -5.6 hypothetical protein compare
ABI39_RS07090 -3.4 -2.2 hypothetical protein compare
ABI39_RS17140 -3.4 -1.8 AAA family ATPase compare
ABI39_RS09685 -3.3 -1.3 hypothetical protein compare
ABI39_RS05175 -3.3 -4.2 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS01655 -3.3 -8.3 methylmalonyl-CoA mutase compare
ABI39_RS06620 -3.3 -1.7 HU family DNA-binding protein compare
ABI39_RS19935 -3.3 -5.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS09575 -3.2 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS02470 -3.1 -3.7 ATP-dependent DNA helicase RecG compare
ABI39_RS12420 -3.1 -4.4 OadG family protein compare
ABI39_RS01650 -3.1 -6.2 methylmalonyl-CoA mutase small subunit compare
ABI39_RS20090 -3.1 -6.6 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS12725 -3.0 -3.1 acetolactate synthase small subunit compare
ABI39_RS12770 -3.0 -1.6 hypothetical protein compare
ABI39_RS03005 -3.0 -6.3 rhamnulose-1-phosphate aldolase compare
ABI39_RS08135 -3.0 -1.9 YicC family protein compare
ABI39_RS17170 -2.9 -1.8 protein BatD compare
ABI39_RS12415 -2.9 -2.7 biotin/lipoyl-binding protein compare
ABI39_RS17950 -2.9 -1.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS10870 -2.9 -6.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS00205 -2.9 -2.8 phosphoglucosamine mutase compare
ABI39_RS02285 -2.8 -1.7 DNA mismatch repair endonuclease MutL compare
ABI39_RS15400 -2.8 -5.2 TraR/DksA C4-type zinc finger protein compare
ABI39_RS08035 -2.8 -1.9 adenylosuccinate lyase compare
ABI39_RS12780 -2.8 -2.7 type III pantothenate kinase compare
ABI39_RS19920 -2.7 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS04860 -2.7 -1.6 HigA family addiction module antidote protein compare
ABI39_RS17420 -2.7 -5.5 serine hydroxymethyltransferase compare
ABI39_RS14265 -2.7 -5.7 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS19950 -2.7 -1.8 diaminopimelate decarboxylase compare
ABI39_RS18910 -2.6 -0.9 preprotein translocase subunit YajC compare
ABI39_RS15320 -2.6 -7.8 PorT family protein compare
ABI39_RS12170 -2.6 -0.7 MarR family transcriptional regulator compare
ABI39_RS04930 -2.6 -2.3 helix-turn-helix transcriptional regulator compare
ABI39_RS01300 -2.5 -9.3 NADP-specific glutamate dehydrogenase compare
ABI39_RS14260 -2.5 -8.3 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14255 -2.5 -2.6 DUF452 family protein compare
ABI39_RS09515 -2.5 -2.6 nucleoside deaminase compare
ABI39_RS01415 -2.5 -1.5 branched-chain amino acid aminotransferase compare
ABI39_RS09850 -2.5 -3.0 energy transducer TonB compare
ABI39_RS05765 -2.5 -1.6 DUF4294 domain-containing protein compare
ABI39_RS11405 -2.5 -7.7 hypothetical protein compare
ABI39_RS17150 -2.5 -3.4 hypothetical protein compare
ABI39_RS18740 -2.4 -5.2 ATP-binding protein compare
ABI39_RS06380 -2.4 -4.5 GH3 auxin-responsive promoter family protein compare
ABI39_RS06235 -2.3 -5.8 UDP-galactopyranose mutase compare
ABI39_RS11655 -2.3 -2.2 MFS transporter compare
ABI39_RS04970 -2.3 -4.1 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS10640 -2.3 -7.4 serine dehydratase subunit alpha family protein compare
ABI39_RS14510 -2.2 -2.2 3'-5' exonuclease compare
ABI39_RS15765 -2.2 -0.8 hypothetical protein compare
ABI39_RS14235 -2.2 -1.7 hypothetical protein compare
ABI39_RS14245 -2.2 -8.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS17640 -2.2 -3.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS09245 -2.2 -9.8 cardiolipin synthase compare
ABI39_RS02500 -2.2 -6.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS08850 -2.2 -3.0 toprim domain-containing protein compare
ABI39_RS02755 -2.2 -1.7 glycosyltransferase compare
ABI39_RS16880 -2.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS09195 -2.1 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS07000 -2.1 -2.3 site-specific tyrosine recombinase XerD compare
ABI39_RS03320 -2.1 -8.6 FecR domain-containing protein compare
ABI39_RS04700 -2.1 -1.4 type I DNA topoisomerase compare
ABI39_RS22955 -2.1 -1.4 hypothetical protein compare
ABI39_RS02965 -2.0 -8.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS22820 -2.0 -0.7 hypothetical protein compare
ABI39_RS04230 -2.0 -4.0 RNA polymerase factor sigma-54 compare
ABI39_RS06220 -2.0 -8.3 glycosyltransferase family 2 protein compare
ABI39_RS17160 -2.0 -1.9 VWA domain-containing protein compare
ABI39_RS12755 -2.0 -1.4 SurA N-terminal domain-containing protein compare
ABI39_RS21055 -2.0 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS16870 -2.0 -2.7 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS19945 -1.9 -6.3 aspartate kinase compare
ABI39_RS02480 -1.9 -2.1 DJ-1/PfpI family protein compare
ABI39_RS14250 -1.9 -4.2 8-amino-7-oxononanoate synthase compare
ABI39_RS16320 -1.9 -0.8 DUF3989 domain-containing protein compare
ABI39_RS16695 -1.9 -6.9 carbon-nitrogen hydrolase compare
ABI39_RS06250 -1.8 -10.5 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS08510 -1.8 -1.5 NADH-quinone oxidoreductase subunit NuoK compare
ABI39_RS17310 -1.8 -7.4 hypothetical protein compare
ABI39_RS11880 -1.8 -1.0 hypothetical protein compare
ABI39_RS11940 -1.8 -9.2 saccharopine dehydrogenase family protein compare
ABI39_RS19775 -1.8 -0.6 tRNA-Met compare
ABI39_RS14240 -1.8 -2.6 biotin synthase BioB compare
ABI39_RS01735 -1.8 -4.6 acyl-CoA dehydrogenase family protein compare
ABI39_RS02530 -1.7 -0.8 winged helix-turn-helix domain-containing protein compare
ABI39_RS16700 -1.7 -3.3 agmatine deiminase family protein compare
ABI39_RS16460 -1.7 -5.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS05280 -1.7 -7.0 S41 family peptidase compare
ABI39_RS01730 -1.7 -4.1 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS01250 -1.7 -1.2 hypothetical protein compare
ABI39_RS14890 -1.7 -0.7 tRNA-Asp compare
ABI39_RS20930 -1.7 -7.2 tetratricopeptide repeat protein compare
ABI39_RS09040 -1.6 -5.9 MFS transporter compare
ABI39_RS08685 -1.6 -1.2 hypothetical protein compare
ABI39_RS08165 -1.6 -0.8 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS20355 -1.6 -7.4 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS17730 -1.6 -6.1 carboxynorspermidine decarboxylase compare
ABI39_RS09855 -1.6 -3.0 polyprenyl synthetase family protein compare
ABI39_RS11670 -1.6 -1.3 molecular chaperone DnaJ compare
ABI39_RS04280 -1.6 -3.1 DUF4292 domain-containing protein compare
ABI39_RS22805 -1.6 -1.9 hypothetical protein compare
ABI39_RS22840 -1.6 -1.8 right-handed parallel beta-helix repeat-containing protein compare
ABI39_RS11805 -1.6 -0.7 hypothetical protein compare
ABI39_RS09845 -1.5 -0.9 (d)CMP kinase compare
ABI39_RS19820 -1.5 -0.9 hypothetical protein compare
ABI39_RS04730 -1.5 -1.0 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS05655 -1.5 -3.0 hypothetical protein compare
ABI39_RS12955 -1.5 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS16885 -1.5 -1.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS04460 -1.5 -4.7 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS04675 -1.5 -0.8 hypothetical protein compare
ABI39_RS20175 -1.5 -1.7 translation elongation factor 4 compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Galactan from Potato in Phocaeicola dorei CL03T12C01

For carbon source Galactan from Potato across organisms