Experiment set1S445 for Phocaeicola dorei CL03T12C01

Compare to:

Galactan from Potato carbon source

Group: carbon source
Media: Varel_Bryant_medium + Galactan from Potato (5 mg/mL)
Culturing: Bdorei_CL03T12C01_ML9, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya on 10/1/23
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 7 genes in this experiment

For carbon source Galactan from Potato in Phocaeicola dorei CL03T12C01

For carbon source Galactan from Potato across organisms

SEED Subsystems

Subsystem #Specific
IbrA and IbrB: co-activators of prophage gene expression 2
Iron acquisition in Vibrio 1
Ton and Tol transport systems 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.