Experiment set1S440 for Phocaeicola dorei CL03T12C01

Compare to:

amylopectin from maize carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04475 -7.6 -15.9 alpha-amylase compare
ABI39_RS07005 -7.4 -3.1 type II 3-dehydroquinate dehydratase compare
ABI39_RS21075 -7.2 -4.0 tryptophan synthase subunit alpha compare
ABI39_RS11830 -6.7 -3.4 ATP phosphoribosyltransferase compare
ABI39_RS04695 -6.6 -5.0 shikimate kinase compare
ABI39_RS10430 -6.6 -11.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02880 -6.5 -8.5 glutamate 5-kinase compare
ABI39_RS10440 -6.5 -5.8 threonine synthase compare
ABI39_RS10495 -6.3 -5.8 prephenate dehydrogenase compare
ABI39_RS21050 -6.3 -6.0 anthranilate synthase component I family protein compare
ABI39_RS16910 -6.2 -9.0 3-phosphoglycerate dehydrogenase compare
ABI39_RS07095 -6.2 -17.2 argininosuccinate lyase compare
ABI39_RS16905 -6.1 -10.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS04460 -6.0 -13.9 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS11835 -6.0 -5.9 histidinol dehydrogenase compare
ABI39_RS02960 -6.0 -9.1 pyrroline-5-carboxylate reductase compare
ABI39_RS10510 -6.0 -8.4 prephenate dehydratase compare
ABI39_RS19935 -6.0 -8.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS02980 -6.0 -7.3 N-acetyltransferase compare
ABI39_RS06995 -5.9 -7.7 tetratricopeptide repeat protein compare
ABI39_RS04455 -5.9 -16.7 TonB-dependent receptor compare
ABI39_RS04425 -5.8 -12.2 hypothetical protein compare
ABI39_RS12645 -5.8 -13.1 chorismate synthase compare
ABI39_RS12415 -5.7 -3.9 biotin/lipoyl-binding protein compare
ABI39_RS11845 -5.7 -7.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02870 -5.7 -5.4 acetylornithine carbamoyltransferase compare
ABI39_RS12715 -5.6 -10.6 dihydroxy-acid dehydratase compare
ABI39_RS02315 -5.5 -9.2 IMP dehydrogenase compare
ABI39_RS08305 -5.5 -4.8 DUF4831 family protein compare
ABI39_RS04685 -5.4 -3.6 acetylglutamate kinase compare
ABI39_RS12720 -5.4 -12.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10195 -5.4 -8.0 2-isopropylmalate synthase compare
ABI39_RS01655 -5.4 -8.1 methylmalonyl-CoA mutase compare
ABI39_RS02975 -5.3 -7.4 argininosuccinate synthase compare
ABI39_RS12665 -5.3 -6.9 shikimate dehydrogenase compare
ABI39_RS02970 -5.3 -7.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02290 -5.2 -2.2 hypothetical protein compare
ABI39_RS06675 -5.2 -5.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10200 -5.2 -12.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS19930 -5.2 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS21060 -5.2 -5.6 anthranilate phosphoribosyltransferase compare
ABI39_RS12420 -5.2 -6.3 OadG family protein compare
ABI39_RS21065 -5.2 -5.5 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS06380 -5.2 -6.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS10210 -5.2 -10.1 2-isopropylmalate synthase compare
ABI39_RS05660 -5.1 -6.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10215 -5.1 -9.0 3-isopropylmalate dehydrogenase compare
ABI39_RS15610 -5.1 -1.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS14255 -5.0 -2.8 DUF452 family protein compare
ABI39_RS15770 -5.0 -1.6 hypothetical protein compare
ABI39_RS10110 -5.0 -11.6 S9 family peptidase compare
ABI39_RS19925 -5.0 -4.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS01360 -4.9 -8.0 hypothetical protein compare
ABI39_RS06010 -4.9 -6.7 polysaccharide deacetylase family protein compare
ABI39_RS18330 -4.9 -9.5 PD40 domain-containing protein compare
ABI39_RS21045 -4.9 -5.3 tryptophan synthase subunit beta compare
ABI39_RS17130 -4.8 -0.9 HU family DNA-binding protein compare
ABI39_RS22820 -4.7 -0.9 hypothetical protein compare
ABI39_RS02875 -4.6 -8.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS04145 -4.6 -2.0 transcription elongation factor GreA compare
ABI39_RS02480 -4.6 -3.3 DJ-1/PfpI family protein compare
ABI39_RS14240 -4.6 -3.6 biotin synthase BioB compare
ABI39_RS01650 -4.6 -7.1 methylmalonyl-CoA mutase small subunit compare
ABI39_RS12425 -4.6 -9.5 acyl-CoA carboxylase subunit beta compare
ABI39_RS14245 -4.5 -9.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS12735 -4.5 -7.9 ketol-acid reductoisomerase compare
ABI39_RS19385 -4.5 -2.6 hypothetical protein compare
ABI39_RS04465 -4.4 -7.9 SusF/SusE family outer membrane protein compare
ABI39_RS10500 -4.4 -4.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS07790 -4.4 -5.1 M20 family metallo-hydrolase compare
ABI39_RS15410 -4.4 -6.9 DUF4296 domain-containing protein compare
ABI39_RS10205 -4.4 -3.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS06670 -4.3 -12.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS09245 -4.3 -9.3 cardiolipin synthase compare
ABI39_RS00770 -4.3 -10.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20355 -4.3 -11.8 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS10435 -4.3 -7.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS09515 -4.3 -3.6 nucleoside deaminase compare
ABI39_RS15320 -4.3 -9.6 PorT family protein compare
ABI39_RS09685 -4.3 -1.6 hypothetical protein compare
ABI39_RS10505 -4.3 -8.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02470 -4.3 -4.1 ATP-dependent DNA helicase RecG compare
ABI39_RS13170 -4.2 -11.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS08195 -4.2 -4.8 hypothetical protein compare
ABI39_RS00090 -4.2 -4.9 HAMP domain-containing histidine kinase compare
ABI39_RS20965 -4.2 -1.9 SPOR domain-containing protein compare
ABI39_RS11545 -4.1 -7.4 hypothetical protein compare
ABI39_RS17745 -4.0 -1.1 sulfur carrier protein ThiS compare
ABI39_RS17140 -4.0 -2.0 AAA family ATPase compare
ABI39_RS00205 -3.9 -2.7 phosphoglucosamine mutase compare
ABI39_RS20930 -3.9 -11.9 tetratricopeptide repeat protein compare
ABI39_RS13835 -3.8 -2.3 DUF3037 domain-containing protein compare
ABI39_RS18165 -3.8 -1.0 DUF5024 domain-containing protein compare
ABI39_RS18745 -3.8 -6.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS12770 -3.8 -1.9 hypothetical protein compare
ABI39_RS16320 -3.8 -1.0 DUF3989 domain-containing protein compare
ABI39_RS02500 -3.7 -6.9 pyridoxine 5'-phosphate synthase compare
ABI39_RS09575 -3.7 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS14260 -3.7 -7.4 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14265 -3.7 -6.0 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS11140 -3.6 -1.0 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS18740 -3.6 -6.5 ATP-binding protein compare
ABI39_RS14235 -3.6 -2.0 hypothetical protein compare
ABI39_RS17170 -3.6 -2.0 protein BatD compare
ABI39_RS04795 -3.6 -1.6 M28 family peptidase compare
ABI39_RS10260 -3.6 -7.0 adenylosuccinate synthase compare
ABI39_RS12725 -3.5 -4.8 acetolactate synthase small subunit compare
ABI39_RS14560 -3.5 -2.6 aspartate 1-decarboxylase compare
ABI39_RS03320 -3.5 -6.2 FecR domain-containing protein compare
ABI39_RS07090 -3.4 -2.8 hypothetical protein compare
ABI39_RS14250 -3.4 -6.0 8-amino-7-oxononanoate synthase compare
ABI39_RS04970 -3.4 -5.1 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS18910 -3.4 -1.1 preprotein translocase subunit YajC compare
ABI39_RS17175 -3.3 -5.9 tetratricopeptide repeat protein compare
ABI39_RS10640 -3.3 -8.2 serine dehydratase subunit alpha family protein compare
ABI39_RS17160 -3.2 -1.9 VWA domain-containing protein compare
ABI39_RS07010 -3.2 -1.7 pyruvate kinase compare
ABI39_RS11840 -3.2 -4.2 histidinol-phosphate transaminase compare
ABI39_RS04690 -3.1 -10.1 biosynthetic arginine decarboxylase compare
ABI39_RS12140 -3.0 -5.4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
ABI39_RS04280 -3.0 -4.8 DUF4292 domain-containing protein compare
ABI39_RS04700 -3.0 -1.9 type I DNA topoisomerase compare
ABI39_RS19950 -3.0 -3.4 diaminopimelate decarboxylase compare
ABI39_RS06250 -3.0 -9.4 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS02755 -2.9 -2.7 glycosyltransferase compare
ABI39_RS06055 -2.9 -6.6 phosphoribosylamine--glycine ligase compare
ABI39_RS02055 -2.8 -6.9 BamA/TamA family outer membrane protein compare
ABI39_RS17640 -2.8 -4.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS10650 -2.8 -13.0 AraC family transcriptional regulator compare
ABI39_RS01415 -2.8 -2.2 branched-chain amino acid aminotransferase compare
ABI39_RS22955 -2.8 -1.7 hypothetical protein compare
ABI39_RS12955 -2.8 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS12755 -2.8 -1.9 SurA N-terminal domain-containing protein compare
ABI39_RS19400 -2.8 -0.7 helix-turn-helix domain-containing protein compare
ABI39_RS12675 -2.7 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS19775 -2.7 -1.0 tRNA-Met compare
ABI39_RS14085 -2.7 -0.9 hypothetical protein compare
ABI39_RS20395 -2.7 -3.7 DedA family protein compare
ABI39_RS04245 -2.7 -1.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS04430 -2.7 -4.7 glycoside hydrolase family 13 protein compare
ABI39_RS02060 -2.6 -8.2 translocation/assembly module TamB domain-containing protein compare
ABI39_RS16040 -2.6 -0.7 hypothetical protein compare
ABI39_RS01735 -2.6 -5.0 acyl-CoA dehydrogenase family protein compare
ABI39_RS16700 -2.6 -4.3 agmatine deiminase family protein compare
ABI39_RS21185 -2.6 -9.4 ROK family transcriptional regulator compare
ABI39_RS00210 -2.6 -3.0 DUF4827 domain-containing protein compare
ABI39_RS20105 -2.6 -5.9 Fe-S cluster domain-containing protein compare
ABI39_RS08555 -2.6 -6.0 Trk system potassium transporter TrkA compare
ABI39_RS01730 -2.5 -4.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS05280 -2.5 -11.1 S41 family peptidase compare
ABI39_RS15415 -2.5 -4.5 hypothetical protein compare
ABI39_RS08035 -2.5 -3.1 adenylosuccinate lyase compare
ABI39_RS11160 -2.5 -1.6 UpxY family transcription antiterminator compare
ABI39_RS04950 -2.5 -2.0 DEAD/DEAH box helicase compare
ABI39_RS09845 -2.5 -1.3 (d)CMP kinase compare
ABI39_RS11655 -2.5 -3.5 MFS transporter compare
ABI39_RS04135 -2.5 -11.1 mannose-1-phosphate guanylyltransferase compare
ABI39_RS22750 -2.4 -1.1 hypothetical protein compare
ABI39_RS05655 -2.4 -3.2 hypothetical protein compare
ABI39_RS17420 -2.4 -5.2 serine hydroxymethyltransferase compare
ABI39_RS02350 -2.3 -4.3 ABC transporter permease compare
ABI39_RS23235 -2.3 -1.0 hypothetical protein compare
ABI39_RS17950 -2.3 -1.7 Crp/Fnr family transcriptional regulator compare
ABI39_RS17310 -2.3 -7.3 hypothetical protein compare
ABI39_RS20080 -2.3 -7.4 electron transport complex subunit RsxA compare
ABI39_RS07655 -2.3 -0.7 peptidase M15 compare
ABI39_RS02965 -2.2 -9.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS13855 -2.2 -4.0 response regulator transcription factor compare
ABI39_RS10635 -2.2 -6.0 N-acetyltransferase compare
ABI39_RS01725 -2.2 -2.7 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS06050 -2.2 -4.1 hypothetical protein compare
ABI39_RS15615 -2.1 -1.7 cysteine-rich CWC family protein compare
ABI39_RS13185 -2.1 -1.3 manganese efflux pump compare
ABI39_RS06220 -2.1 -8.4 glycosyltransferase family 2 protein compare
ABI39_RS05175 -2.1 -5.2 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS04860 -2.1 -1.0 HigA family addiction module antidote protein compare
ABI39_RS01300 -2.1 -8.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS09830 -2.1 -3.5 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS15265 -2.1 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS06920 -2.1 -3.2 glycosyltransferase compare
ABI39_RS16485 -2.1 -1.1 hypothetical protein compare
ABI39_RS12965 -2.1 -6.3 hypothetical protein compare
ABI39_RS16695 -2.1 -6.8 carbon-nitrogen hydrolase compare
ABI39_RS04675 -2.0 -1.1 hypothetical protein compare
ABI39_RS11670 -2.0 -1.7 molecular chaperone DnaJ compare
ABI39_RS17205 -2.0 -2.3 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS00240 -2.0 -2.7 NigD-like N-terminal domain-containing protein compare
ABI39_RS04885 -2.0 -3.8 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS20220 -2.0 -1.3 DNA-binding protein compare
ABI39_RS10090 -1.9 -7.3 hypothetical protein compare
ABI39_RS06990 -1.9 -9.8 DUF4369 domain-containing protein compare
ABI39_RS21350 -1.9 -1.0 aspartate--ammonia ligase compare
ABI39_RS20100 -1.9 -8.1 electron transport complex subunit RsxC compare
ABI39_RS15430 -1.9 -0.7 hypothetical protein compare
ABI39_RS17180 -1.9 -4.3 phosphatase PAP2 family protein compare
ABI39_RS21955 -1.9 -0.7 DUF4133 domain-containing protein compare
ABI39_RS02490 -1.9 -3.5 biopolymer transporter ExbD compare
ABI39_RS09230 -1.9 -1.2 hypothetical protein compare
ABI39_RS11550 -1.9 -6.9 hypothetical protein compare
ABI39_RS20090 -1.8 -6.0 RnfABCDGE type electron transport complex subunit G compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source amylopectin from maize in Phocaeicola dorei CL03T12C01

For carbon source amylopectin from maize across organisms