Experiment set1S440 for Phocaeicola dorei CL03T12C01

Compare to:

amylopectin from maize carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABI39_RS04435 +6.4 42.0 glycoside hydrolase family 97 protein compare
ABI39_RS07885 +4.0 20.5 hypothetical protein compare
ABI39_RS11875 +3.6 8.2 OmpH family outer membrane protein compare
ABI39_RS14030 +3.4 10.5 MFS transporter compare
ABI39_RS19590 +3.3 2.0 DUF3127 domain-containing protein compare
ABI39_RS12435 +3.2 8.3 GNAT family N-acetyltransferase compare
ABI39_RS22175 +2.9 4.2 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS14465 +2.8 11.2 hypothetical protein compare
ABI39_RS13980 +2.5 5.0 Do family serine endopeptidase compare
ABI39_RS16880 +2.3 6.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS16875 +2.3 5.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS03110 +2.2 5.0 hypothetical protein compare
ABI39_RS02125 +2.1 2.7 hypothetical protein compare
ABI39_RS14480 +2.0 9.5 ferrous iron transport protein B compare
ABI39_RS08145 +2.0 3.3 DUF4290 domain-containing protein compare
ABI39_RS16895 +2.0 3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS11880 +1.9 2.0 hypothetical protein compare
ABI39_RS22740 +1.9 2.3 IS66 family insertion sequence element accessory protein TnpB compare
ABI39_RS18420 +1.8 3.3 helix-turn-helix transcriptional regulator compare
ABI39_RS07890 +1.8 2.5 hypothetical protein compare
ABI39_RS09670 +1.8 2.2 cardiolipin synthase compare
ABI39_RS11000 +1.8 2.2 hypothetical protein compare
ABI39_RS21960 +1.7 3.5 hypothetical protein compare
ABI39_RS14035 +1.7 2.9 energy-dependent translational throttle protein EttA compare
ABI39_RS09900 +1.6 5.7 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS02660 +1.6 9.7 TonB-dependent receptor compare
ABI39_RS16885 +1.6 2.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS12410 +1.6 3.0 sodium ion-translocating decarboxylase subunit beta compare
ABI39_RS22225 +1.6 1.1 hypothetical protein compare
ABI39_RS08240 +1.6 9.6 substrate-binding domain-containing protein compare
ABI39_RS10250 +1.6 5.1 DNA alkylation repair protein compare
ABI39_RS06330 +1.5 7.4 ribonuclease III compare
ABI39_RS07345 +1.5 2.7 TM0996/MTH895 family glutaredoxin-like protein compare
ABI39_RS11980 +1.5 2.3 tyrosine-protein kinase compare
ABI39_RS02745 +1.5 4.1 DUF59 domain-containing protein compare
ABI39_RS02895 +1.5 3.8 ATP-binding protein compare
ABI39_RS08810 +1.5 2.0 DUF3876 domain-containing protein compare
ABI39_RS06165 +1.5 2.2 GtrA family protein compare
ABI39_RS05020 +1.5 1.8 hypothetical protein compare
ABI39_RS11400 +1.5 5.7 aspartate-alanine antiporter compare
ABI39_RS19630 +1.5 2.4 hypothetical protein compare
ABI39_RS11805 +1.4 1.6 hypothetical protein compare
ABI39_RS16720 +1.4 5.1 C1 family peptidase compare
ABI39_RS16970 +1.4 1.9 NUDIX hydrolase compare
ABI39_RS16870 +1.4 3.8 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS20400 +1.4 1.9 thiol peroxidase compare
ABI39_RS04260 +1.4 2.5 RNA-binding protein compare
ABI39_RS08220 +1.4 8.7 TonB-dependent receptor compare
ABI39_RS15300 +1.4 4.7 excinuclease ABC subunit UvrB compare
ABI39_RS22100 +1.3 1.2 hypothetical protein compare
ABI39_RS11680 +1.3 6.2 ATP-binding cassette domain-containing protein compare
ABI39_RS15820 +1.3 2.1 hypothetical protein compare
ABI39_RS06215 +1.3 4.3 glycosyltransferase family 2 protein compare
ABI39_RS11635 +1.3 2.6 NUDIX hydrolase compare
ABI39_RS17845 +1.3 4.7 AhpC/TSA family protein compare
ABI39_RS21910 +1.3 3.1 hypothetical protein compare
ABI39_RS12670 +1.3 3.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS16400 +1.3 2.6 hypothetical protein compare
ABI39_RS16655 +1.3 3.4 alpha-1,2-fucosyltransferase compare
ABI39_RS03105 +1.2 1.7 MobC family plasmid mobilization relaxosome protein compare
ABI39_RS07590 +1.2 1.3 site-specific integrase compare
ABI39_RS18520 +1.2 2.3 metallophosphoesterase compare
ABI39_RS18660 +1.2 1.2 Hsp20/alpha crystallin family protein compare
ABI39_RS18220 +1.2 1.9 3'-5' exonuclease domain-containing protein 2 compare
ABI39_RS12975 +1.1 3.2 flippase-like domain-containing protein compare
ABI39_RS16915 +1.1 4.9 DUF1015 domain-containing protein compare
ABI39_RS00440 +1.1 6.0 excinuclease ABC subunit UvrA compare
ABI39_RS14145 +1.1 1.9 diacylglycerol kinase family protein compare
ABI39_RS07505 +1.1 4.0 helix-turn-helix domain-containing protein compare
ABI39_RS14685 +1.1 2.4 methionine synthase compare
ABI39_RS14880 +1.1 2.0 GNAT family N-acetyltransferase compare
ABI39_RS12585 +1.1 4.9 hypothetical protein compare
ABI39_RS02190 +1.1 3.0 tRNA 2-thiouridine(34) synthase MnmA compare
ABI39_RS09640 +1.1 1.4 HigA family addiction module antidote protein compare
ABI39_RS16980 +1.1 2.2 helix-turn-helix transcriptional regulator compare
ABI39_RS06185 +1.1 4.2 glycosyltransferase compare
ABI39_RS14875 +1.0 2.0 hypothetical protein compare
ABI39_RS04505 +1.0 3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS03830 +1.0 0.8 ribosome-associated translation inhibitor RaiA compare
ABI39_RS10105 +1.0 3.1 lipoyl synthase compare
ABI39_RS11490 +1.0 1.1 hypothetical protein compare
ABI39_RS12450 +1.0 1.1 Rossmann-like and DUF2520 domain-containing protein compare
ABI39_RS19845 +1.0 0.9 hypothetical protein compare
ABI39_RS05635 +1.0 1.0 class I SAM-dependent methyltransferase compare
ABI39_RS16730 +1.0 2.3 lipopolysaccharide biosynthesis protein compare
ABI39_RS15330 +1.0 4.8 excinuclease ABC subunit UvrA compare
ABI39_RS12560 +1.0 4.0 GGGtGRT protein compare
ABI39_RS11470 +1.0 2.5 hypothetical protein compare
ABI39_RS15015 +1.0 1.0 class I SAM-dependent methyltransferase compare
ABI39_RS07880 +1.0 1.6 helix-turn-helix transcriptional regulator compare
ABI39_RS20740 +1.0 1.1 hypothetical protein compare
ABI39_RS11430 +1.0 1.4 amidohydrolase compare
ABI39_RS15630 +1.0 2.9 sirohydrochlorin cobaltochelatase compare
ABI39_RS02375 +1.0 2.4 DUF177 domain-containing protein compare
ABI39_RS23070 +0.9 1.1 hypothetical protein compare
ABI39_RS05080 +0.9 1.0 helix-turn-helix transcriptional regulator compare
ABI39_RS07625 +0.9 2.1 HAD family hydrolase compare
ABI39_RS06195 +0.9 4.2 glycosyltransferase compare
ABI39_RS10965 +0.9 1.5 IS66 family transposase compare
ABI39_RS12565 +0.9 2.1 hypothetical protein compare
ABI39_RS02860 +0.9 3.3 NigD-like N-terminal domain-containing protein compare
ABI39_RS09860 +0.9 2.6 TatD family hydrolase compare
ABI39_RS14910 +0.9 3.3 hydroxylamine reductase compare
ABI39_RS08345 +0.9 1.6 hypothetical protein compare
ABI39_RS20500 +0.9 2.2 acyltransferase compare
ABI39_RS19495 +0.9 2.3 TIGR02757 family protein compare
ABI39_RS11600 +0.9 2.4 tetratricopeptide repeat protein compare
ABI39_RS15260 +0.8 1.1 DUF4286 family protein compare
ABI39_RS15340 +0.8 3.5 peptide MFS transporter compare
ABI39_RS08165 +0.8 1.0 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS02655 +0.8 5.3 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS19425 +0.8 1.7 hypothetical protein compare
ABI39_RS11235 +0.8 1.4 aminodeoxychorismate synthase component I compare
ABI39_RS10410 +0.8 4.1 FAD-binding protein compare
ABI39_RS09945 +0.8 2.1 thioesterase family protein compare
ABI39_RS07330 +0.8 2.1 winged helix-turn-helix transcriptional regulator compare
ABI39_RS08655 +0.8 1.1 RNA polymerase sigma-70 factor compare
ABI39_RS11815 +0.8 3.2 uridine kinase compare
ABI39_RS15925 +0.8 3.0 helix-turn-helix domain-containing protein compare
ABI39_RS16445 +0.8 1.3 alpha-ribazole phosphatase compare
ABI39_RS22840 +0.8 1.6 right-handed parallel beta-helix repeat-containing protein compare
ABI39_RS22135 +0.8 0.7 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS13160 +0.8 0.7 DUF4847 family protein compare
ABI39_RS05320 +0.8 2.0 hypothetical protein compare
ABI39_RS13000 +0.8 1.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS09975 +0.8 2.5 DUF1295 domain-containing protein compare
ABI39_RS15965 +0.8 1.2 hypothetical protein compare
ABI39_RS05995 +0.8 2.8 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS01595 +0.8 3.0 dTDP-glucose 4,6-dehydratase compare
ABI39_RS13215 +0.8 4.9 ATP-dependent DNA helicase RecQ compare
ABI39_RS06725 +0.8 1.8 hypothetical protein compare
ABI39_RS22090 +0.8 2.7 AAA family ATPase compare
ABI39_RS10715 +0.8 1.2 hypothetical protein compare
ABI39_RS13575 +0.8 2.0 YdcF family protein compare
ABI39_RS18920 +0.8 1.6 PUR family DNA/RNA-binding protein compare
ABI39_RS00350 +0.8 1.7 hypothetical protein compare
ABI39_RS18015 +0.8 2.4 efflux transporter outer membrane subunit compare
ABI39_RS19370 +0.7 2.1 TolC family protein compare
ABI39_RS16030 +0.7 1.3 hypothetical protein compare
ABI39_RS20015 +0.7 2.2 hypothetical protein compare
ABI39_RS22260 +0.7 0.9 DUF3873 family protein compare
ABI39_RS15945 +0.7 0.9 hypothetical protein compare
ABI39_RS15160 +0.7 1.8 hypothetical protein compare
ABI39_RS05850 +0.7 3.4 DUF4884 domain-containing protein compare
ABI39_RS12025 +0.7 2.4 acyltransferase compare
ABI39_RS17575 +0.7 2.3 glycosyltransferase compare
ABI39_RS17330 +0.7 2.7 inositol monophosphatase compare
ABI39_RS05950 +0.7 0.9 ORF6N domain-containing protein compare
ABI39_RS19995 +0.7 0.9 DUF4494 domain-containing protein compare
ABI39_RS18615 +0.7 2.1 hypothetical protein compare
ABI39_RS20020 +0.7 2.5 DUF3943 domain-containing protein compare
ABI39_RS11975 +0.7 0.8 polysaccharide export protein compare
ABI39_RS06310 +0.7 2.3 RNA polymerase sigma-70 factor compare
ABI39_RS08055 +0.7 1.6 zeta toxin family protein compare
ABI39_RS00130 +0.7 3.5 FecR domain-containing protein compare
ABI39_RS15980 +0.7 1.1 hypothetical protein compare
ABI39_RS01385 +0.7 1.7 copper resistance protein NlpE compare
ABI39_RS23105 +0.7 0.5 hypothetical protein compare
ABI39_RS13220 +0.7 1.7 PD-(D/E)XK nuclease domain-containing protein compare
ABI39_RS11510 +0.7 1.3 50S ribosomal protein L11 methyltransferase compare
ABI39_RS03525 +0.7 2.7 hypothetical protein compare
ABI39_RS21490 +0.7 1.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS07555 +0.7 2.2 hypothetical protein compare
ABI39_RS06885 +0.7 0.8 hypothetical protein compare
ABI39_RS18210 +0.7 2.7 metallophosphoesterase compare
ABI39_RS22825 +0.7 1.1 hypothetical protein compare
ABI39_RS03160 +0.7 0.8 helix-turn-helix domain-containing protein compare
ABI39_RS16550 +0.7 1.2 ABC transporter ATP-binding protein compare
ABI39_RS00045 +0.7 2.2 long-chain fatty acid--CoA ligase compare
ABI39_RS23065 +0.7 1.8 hypothetical protein compare
ABI39_RS15445 +0.7 1.1 tRNA-Lys compare
ABI39_RS08900 +0.7 0.7 hypothetical protein compare
ABI39_RS01455 +0.7 2.3 hypothetical protein compare
ABI39_RS20835 +0.7 1.5 CDP-glucose 4,6-dehydratase compare
ABI39_RS00530 +0.7 1.7 hypothetical protein compare
ABI39_RS02540 +0.7 2.8 AAA family ATPase compare
ABI39_RS20175 +0.7 1.1 translation elongation factor 4 compare
ABI39_RS08295 +0.7 1.2 DUF3332 domain-containing protein compare
ABI39_RS14050 +0.7 1.7 hypothetical protein compare
ABI39_RS01450 +0.7 2.4 DUF3244 domain-containing protein compare
ABI39_RS06930 +0.7 2.7 glycosyltransferase family 4 protein compare
ABI39_RS19565 +0.7 2.5 hypothetical protein compare
ABI39_RS01250 +0.7 1.1 hypothetical protein compare
ABI39_RS11605 +0.7 1.9 DUF4468 domain-containing protein compare
ABI39_RS15705 +0.7 0.8 DUF2693 domain-containing protein compare
ABI39_RS01130 +0.7 2.5 DUF3316 domain-containing protein compare
ABI39_RS00460 +0.6 1.8 hypothetical protein compare
ABI39_RS12130 +0.6 1.5 MmcQ/YjbR family DNA-binding protein compare
ABI39_RS01670 +0.6 2.4 DUF1232 domain-containing protein compare
ABI39_RS01580 +0.6 3.0 peptidase C39 compare
ABI39_RS08795 +0.6 0.8 DUF4134 domain-containing protein compare
ABI39_RS19325 +0.6 2.4 AraC family transcriptional regulator compare
ABI39_RS16975 +0.6 1.7 arginase family protein compare
ABI39_RS03200 +0.6 1.7 helix-turn-helix transcriptional regulator compare
ABI39_RS01585 +0.6 3.8 RNA degradosome polyphosphate kinase compare
ABI39_RS16940 +0.6 2.0 Cof-type HAD-IIB family hydrolase compare
ABI39_RS07355 +0.6 2.1 permease compare
ABI39_RS23190 +0.6 1.8 hypothetical protein compare
ABI39_RS15625 +0.6 0.7 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS16740 +0.6 2.5 ATP-grasp domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source amylopectin from maize in Phocaeicola dorei CL03T12C01

For carbon source amylopectin from maize across organisms