Experiment set1S44 for Erwinia amylovora T8

FE-G3T (Control flower group 3, top)

Group:
Media: Milo
Culturing: Erwinia_T8_ML2
By: Milo on 19-Mar-24

Specific Phenotypes

For 10 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Proteasome bacterial	2
Proteolysis in bacteria, ATP-dependent	2
Cyanophycin Metabolism	1
DNA-binding regulatory proteins, strays	1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	1
Glutaredoxins	1
Glutathione: Redox cycle	1
Oxidative stress	1
Stringent Response, (p)ppGpp metabolism	1
Thioredoxin-disulfide reductase	1
Type III secretion systems, extended	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Purine metabolism
• Alanine and aspartate metabolism
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Nitrogen metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
superpathway of L-asparagine biosynthesis	2	2	2
L-asparagine biosynthesis I	1	1	1
L-glutamine degradation I	1	1	1
L-asparagine biosynthesis II	1	1	1
L-glutamate biosynthesis I	2	2	1
ppGpp metabolism	6	6	2
ammonia assimilation cycle III	3	3	1
superpathway of L-aspartate and L-asparagine biosynthesis	4	4	1
glutaminyl-tRNAgln biosynthesis via transamidation	4	3	1
L-asparagine biosynthesis III (tRNA-dependent)	4	3	1
L-glutamate and L-glutamine biosynthesis	7	6	1
L-citrulline biosynthesis	8	5	1
peptidoglycan recycling II	10	7	1
superpathway of L-citrulline metabolism	12	7	1
peptidoglycan recycling I	14	14	1