Experiment set1S44 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.3 -16.6 Pca regulon regulatory protein compare
MPMX19_01054 -2.7 -6.6 Aspartate carbamoyltransferase compare
MPMX19_00705 -2.6 -3.1 Cell division coordinator CpoB compare
MPMX19_05680 -2.5 -4.7 Cell cycle response regulator CtrA compare
MPMX19_01560 -2.5 -4.4 3'-5' exonuclease DinG compare
MPMX19_00126 -2.5 -4.1 hypothetical protein compare
MPMX19_04000 -2.4 -4.5 Flagellar motor switch protein FliG compare
MPMX19_02980 -2.4 -1.7 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_01495 -2.4 -3.5 hypothetical protein compare
MPMX19_01053 -2.2 -5.0 Dihydroorotase compare
MPMX19_02267 -2.2 -1.5 hypothetical protein compare
MPMX19_06123 -2.1 -3.1 hypothetical protein compare
MPMX19_00858 -2.1 -5.7 Flagellar biosynthetic protein FliP compare
MPMX19_06547 -2.0 -6.5 hypothetical protein compare
MPMX19_04208 -2.0 -4.4 flagellum biosynthesis repressor protein FlbT compare
MPMX19_00838 -2.0 -3.2 GTP pyrophosphokinase rsh compare
MPMX19_02543 -2.0 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00530 -1.9 -4.1 Orotate phosphoribosyltransferase compare
MPMX19_04112 -1.9 -4.5 hypothetical protein compare
MPMX19_01610 -1.9 -1.9 ATP-dependent DNA helicase PcrA compare
MPMX19_00142 -1.9 -2.8 hypothetical protein compare
MPMX19_00128 -1.9 -11.8 hypothetical protein compare
MPMX19_00475 -1.9 -3.0 hypothetical protein compare
MPMX19_05679 -1.8 -9.7 Flagellum-specific ATP synthase compare
MPMX19_02657 -1.8 -14.4 Glutamate synthase [NADPH] large chain compare
MPMX19_04092 -1.8 -7.7 Flagellar motor switch protein FliN compare
MPMX19_04114 -1.7 -3.7 hypothetical protein compare
MPMX19_00862 -1.7 -8.8 hypothetical protein compare
MPMX19_02658 -1.7 -11.5 Glutamate synthase [NADPH] small chain compare
MPMX19_01597 -1.7 -3.0 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_04948 -1.7 -2.7 HTH-type transcriptional regulator GltR compare
MPMX19_04087 -1.7 -4.0 Flagellum site-determining protein YlxH compare
MPMX19_04094 -1.7 -9.8 Flagellar M-ring protein compare
MPMX19_01484 -1.7 -6.4 Flagellar basal-body rod protein FlgG compare
MPMX19_02981 -1.7 -6.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00867 -1.7 -12.0 Flagellar biosynthetic protein FlhB compare
MPMX19_00866 -1.7 -8.1 Flagellar biosynthetic protein FliR compare
MPMX19_01884 -1.6 -3.3 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_05678 -1.6 -6.3 hypothetical protein compare
MPMX19_04093 -1.5 -3.2 hypothetical protein compare
MPMX19_01497 -1.5 -3.2 hypothetical protein compare
MPMX19_05442 -1.5 -3.1 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_05387 -1.5 -3.0 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_01545 -1.5 -1.7 Lon protease compare
MPMX19_04218 -1.5 -5.5 Protein phosphatase PrpC compare
MPMX19_06969 -1.5 -3.4 hypothetical protein compare
MPMX19_00304 -1.5 -3.1 Phosphatidylcholine synthase compare
MPMX19_01084 -1.4 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_03722 -1.4 -2.4 hypothetical protein compare
MPMX19_01111 -1.4 -2.8 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_01304 -1.4 -7.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_00311 -1.4 -11.5 hypothetical protein compare
MPMX19_04222 -1.4 -10.6 hypothetical protein compare
MPMX19_06967 -1.3 -1.8 hypothetical protein compare
MPMX19_01483 -1.3 -8.5 Flagellar basal-body rod protein FlgG compare
MPMX19_06746 -1.3 -2.3 Chemotaxis protein CheW compare
MPMX19_06179 -1.3 -2.1 putative SURF1-like protein compare
MPMX19_00863 -1.3 -6.7 Flagellar basal-body rod protein FlgC compare
MPMX19_01748 -1.3 -2.8 hypothetical protein compare
MPMX19_00680 -1.3 -2.4 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_04835 -1.3 -2.9 hypothetical protein compare
MPMX19_01718 -1.3 -2.5 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_06677 -1.3 -2.7 hypothetical protein compare
MPMX19_03948 -1.2 -1.4 tRNA-Ser compare
MPMX19_02801 -1.2 -2.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06044 -1.2 -1.8 hypothetical protein compare
MPMX19_00864 -1.2 -3.8 Flagellar hook-basal body complex protein FliE compare
MPMX19_02268 -1.2 -3.1 hypothetical protein compare
MPMX19_03421 -1.2 -2.5 hypothetical protein compare
MPMX19_00714 -1.2 -5.1 Ferrous-iron efflux pump FieF compare
MPMX19_04089 -1.1 -7.8 Flagellar biosynthesis protein FlhA compare
MPMX19_03575 -1.1 -3.1 HTH-type transcriptional regulator NimR compare
MPMX19_01883 -1.1 -4.7 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_02613 -1.1 -1.7 hypothetical protein compare
MPMX19_04869 -1.1 -3.8 DNA polymerase I compare
MPMX19_00906 -1.1 -7.5 Amidophosphoribosyltransferase compare
MPMX19_03613 -1.1 -2.9 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_01630 -1.1 -3.2 Phosphoribosylamine--glycine ligase compare
MPMX19_04205 -1.1 -2.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04610 -1.1 -2.2 putative enoyl-CoA hydratase 1 compare
MPMX19_00141 -1.0 -3.4 hypothetical protein compare
MPMX19_05023 -1.0 -1.4 hypothetical protein compare
MPMX19_06644 -1.0 -8.6 GDP-mannose 4,6-dehydratase compare
MPMX19_00131 -1.0 -2.4 hypothetical protein compare
MPMX19_05675 -1.0 -3.0 HTH-type transcriptional regulator YjiE compare
MPMX19_05714 -1.0 -5.9 hypothetical protein compare
MPMX19_01426 -1.0 -1.8 hypothetical protein compare
MPMX19_00976 -1.0 -2.0 ATP-dependent RNA helicase RhlE compare
MPMX19_00854 -1.0 -8.7 hypothetical protein compare
MPMX19_00020 -1.0 -1.6 hypothetical protein compare
MPMX19_06777 -1.0 -1.5 hypothetical protein compare
MPMX19_05727 -1.0 -5.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_05065 -1.0 -1.7 Farnesyl diphosphate synthase compare
MPMX19_02095 -1.0 -2.1 Ferric uptake regulation protein compare
MPMX19_04258 -1.0 -3.5 hypothetical protein compare
MPMX19_06577 -1.0 -6.5 hypothetical protein compare
MPMX19_06734 -1.0 -8.2 Alginate biosynthesis protein AlgA compare
MPMX19_02078 -1.0 -2.6 hypothetical protein compare
MPMX19_03492 -1.0 -2.7 3'-5' exonuclease DinG compare
MPMX19_01014 -1.0 -3.0 Indole-3-glycerol phosphate synthase compare
MPMX19_04779 -0.9 -2.1 hypothetical protein compare
MPMX19_03196 -0.9 -2.8 hypothetical protein compare
MPMX19_02320 -0.9 -1.6 HTH-type transcriptional regulator GltR compare
MPMX19_01496 -0.9 -5.5 hypothetical protein compare
MPMX19_00841 -0.9 -1.3 Holo-[acyl-carrier-protein] synthase compare
MPMX19_06544 -0.9 -7.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_05473 -0.9 -2.6 hypothetical protein compare
MPMX19_06808 -0.9 -1.9 HTH-type transcriptional regulator DmlR compare
MPMX19_01714 -0.9 -1.4 tRNA-modifying protein YgfZ compare
MPMX19_01485 -0.9 -6.0 hypothetical protein compare
MPMX19_00260 -0.9 -1.7 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00050 -0.9 -3.0 Pyridoxal phosphate homeostasis protein compare
MPMX19_03069 -0.9 -1.9 hypothetical protein compare
MPMX19_01494 -0.9 -5.0 Flagellar P-ring protein compare
MPMX19_03634 -0.9 -2.2 Arginase compare
MPMX19_05144 -0.9 -1.6 hypothetical protein compare
MPMX19_02002 -0.9 -2.7 hypothetical protein compare
MPMX19_03760 -0.9 -2.2 Ribose import binding protein RbsB compare
MPMX19_06373 -0.9 -1.2 Lipoprotein signal peptidase compare
MPMX19_05505 -0.9 -1.9 Leucine-responsive regulatory protein compare
MPMX19_02235 -0.8 -2.2 tRNA-Ala compare
MPMX19_02702 -0.8 -2.8 hypothetical protein compare
MPMX19_03972 -0.8 -2.4 Enolase compare
MPMX19_03369 -0.8 -1.7 hypothetical protein compare
MPMX19_05111 -0.8 -1.8 PqqA binding protein compare
MPMX19_02607 -0.8 -2.7 hypothetical protein compare
MPMX19_01486 -0.8 -4.6 Flagellar L-ring protein compare
MPMX19_02675 -0.8 -6.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_06954 -0.8 -1.9 hypothetical protein compare
MPMX19_06211 -0.8 -1.6 tRNA-Ala compare
MPMX19_02511 -0.8 -1.5 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_04950 -0.8 -3.3 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_05930 -0.8 -2.0 Dipeptidyl-peptidase 6 compare
MPMX19_02031 -0.8 -1.6 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_06545 -0.8 -6.7 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_00061 -0.8 -2.0 L-lysine 2,3-aminomutase compare
MPMX19_02601 -0.8 -4.4 hypothetical protein compare
MPMX19_01703 -0.8 -1.3 hypothetical protein compare
MPMX19_02484 -0.8 -1.9 Heat-inducible transcription repressor HrcA compare
MPMX19_01342 -0.8 -1.9 hypothetical protein compare
MPMX19_05831 -0.8 -2.2 Protein/nucleic acid deglycase 2 compare
MPMX19_05167 -0.8 -2.9 hypothetical protein compare
MPMX19_01113 -0.7 -1.8 Adaptive-response sensory-kinase SasA compare
MPMX19_04199 -0.7 -4.1 Pseudaminic acid synthase compare
MPMX19_06928 -0.7 -1.5 hypothetical protein compare
MPMX19_02553 -0.7 -3.2 Protein-export protein SecB compare
MPMX19_02979 -0.7 -2.8 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_03798 -0.7 -2.1 hypothetical protein compare
MPMX19_06090 -0.7 -1.6 Pyruvate dehydrogenase complex repressor compare
MPMX19_05271 -0.7 -1.4 hypothetical protein compare
MPMX19_01777 -0.7 -1.9 2-aminoadipate transaminase compare
MPMX19_02759 -0.7 -2.8 Xanthine phosphoribosyltransferase compare
MPMX19_01822 -0.7 -3.4 2-isopropylmalate synthase compare
MPMX19_06271 -0.7 -4.7 hypothetical protein compare
MPMX19_03609 -0.7 -1.7 HTH-type transcriptional repressor NagR compare
MPMX19_06258 -0.7 -2.4 hypothetical protein compare
MPMX19_00748 -0.7 -2.6 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_02736 -0.7 -4.5 Tryptophan synthase beta chain compare
MPMX19_06916 -0.7 -1.6 Crotonyl-CoA hydratase compare
MPMX19_02679 -0.7 -2.0 hypothetical protein compare
MPMX19_02105 -0.7 -1.6 hypothetical protein compare
MPMX19_06014 -0.7 -3.9 Histidinol-phosphate aminotransferase compare
MPMX19_05119 -0.7 -5.3 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_03292 -0.7 -2.0 hypothetical protein compare
MPMX19_04968 -0.7 -1.3 hypothetical protein compare
MPMX19_01243 -0.7 -1.2 hypothetical protein compare
MPMX19_02737 -0.7 -3.5 Tryptophan synthase alpha chain compare
MPMX19_03915 -0.7 -1.4 hypothetical protein compare
MPMX19_06736 -0.7 -2.6 hypothetical protein compare
MPMX19_00150 -0.7 -2.8 hypothetical protein compare
MPMX19_06789 -0.7 -1.4 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX19_04863 -0.7 -1.5 Transcriptional regulatory protein LnrK compare
MPMX19_06102 -0.7 -2.0 Membrane-bound lytic murein transglycosylase C compare
MPMX19_05997 -0.7 -1.8 hypothetical protein compare
MPMX19_04391 -0.7 -3.9 Homoserine O-acetyltransferase compare
MPMX19_01201 -0.7 -1.9 hypothetical protein compare
MPMX19_03806 -0.7 -1.7 hypothetical protein compare
MPMX19_02668 -0.7 -4.2 RNA polymerase sigma-54 factor 2 compare
MPMX19_05453 -0.7 -2.1 hypothetical protein compare
MPMX19_03859 -0.7 -1.6 hypothetical protein compare
MPMX19_05748 -0.7 -1.9 Response regulator SaeR compare
MPMX19_05358 -0.7 -1.3 hypothetical protein compare
MPMX19_06815 -0.7 -1.6 hypothetical protein compare
MPMX19_00133 -0.7 -3.8 hypothetical protein compare
MPMX19_00503 -0.6 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_02714 -0.6 -1.7 hypothetical protein compare
MPMX19_02195 -0.6 -2.8 Recombination protein RecR compare
MPMX19_01939 -0.6 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_00366 -0.6 -2.6 hypothetical protein compare
MPMX19_03976 -0.6 -2.1 hypothetical protein compare
MPMX19_00173 -0.6 -1.9 hypothetical protein compare
MPMX19_04210 -0.6 -1.5 hypothetical protein compare
MPMX19_05872 -0.6 -1.7 Redox-sensitive transcriptional activator SoxR compare
MPMX19_04200 -0.6 -3.4 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06824 -0.6 -2.1 Flavin-dependent trigonelline monooxygenase, reductase component compare
MPMX19_00538 -0.6 -4.3 GTP 3',8-cyclase compare
MPMX19_04469 -0.6 -2.1 hypothetical protein compare
MPMX19_04963 -0.6 -1.3 Cysteine desulfurase IscS compare
MPMX19_03556 -0.6 -2.6 Putative isomerase YbhH compare
MPMX19_04392 -0.6 -1.4 Bifunctional methionine biosynthesis protein MetXA/MetW compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms