Experiment set1S44 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_03195 +0.9 1.8 hypothetical protein compare
MPMX19_03123 +0.9 2.5 Citrate lyase acyl carrier protein compare
MPMX19_04633 +0.9 3.8 hypothetical protein compare
MPMX19_06519 +0.9 1.5 HTH-type transcriptional repressor NagR compare
MPMX19_00414 +0.9 3.0 Pyruvate dehydrogenase complex repressor compare
MPMX19_02664 +0.8 1.8 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_03095 +0.8 2.8 hypothetical protein compare
MPMX19_01421 +0.8 2.6 hypothetical protein compare
MPMX19_03109 +0.8 2.5 hypothetical protein compare
MPMX19_05254 +0.8 1.9 Carbon monoxide dehydrogenase small chain compare
MPMX19_06510 +0.8 2.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_02815 +0.7 2.5 2-keto-4-pentenoate hydratase compare
MPMX19_05176 +0.7 1.5 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_05534 +0.7 1.9 DNA gyrase inhibitor YacG compare
MPMX19_01616 +0.7 2.3 hypothetical protein compare
MPMX19_06488 +0.7 2.0 Taurine-binding periplasmic protein compare
MPMX19_04792 +0.7 2.3 hypothetical protein compare
MPMX19_05921 +0.7 1.9 hypothetical protein compare
MPMX19_02987 +0.6 2.0 hypothetical protein compare
MPMX19_01702 +0.6 1.6 Inorganic triphosphatase compare
MPMX19_04095 +0.6 2.7 hypothetical protein compare
MPMX19_02041 +0.6 1.8 Protein YciI compare
MPMX19_05483 +0.6 2.7 hypothetical protein compare
MPMX19_02937 +0.6 1.2 hypothetical protein compare
MPMX19_04986 +0.6 1.5 hypothetical protein compare
MPMX19_03001 +0.6 2.6 Ribulokinase compare
MPMX19_02094 +0.6 2.5 hypothetical protein compare
MPMX19_00212 +0.6 5.3 Nitrogen fixation regulation protein FixK compare
MPMX19_04531 +0.6 2.4 hypothetical protein compare
MPMX19_05152 +0.6 1.9 Phosphonoacetaldehyde hydrolase compare
MPMX19_04726 +0.6 2.1 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_03212 +0.6 2.4 hypothetical protein compare
MPMX19_01249 +0.6 1.4 Periplasmic serine endoprotease DegP compare
MPMX19_04648 +0.6 2.3 hypothetical protein compare
MPMX19_01059 +0.6 1.0 hypothetical protein compare
MPMX19_06888 +0.6 2.5 hypothetical protein compare
MPMX19_02492 +0.6 2.3 hypothetical protein compare
MPMX19_03262 +0.6 2.0 putative HTH-type transcriptional repressor ExuR compare
MPMX19_05333 +0.6 1.5 Thymidine phosphorylase compare
MPMX19_03768 +0.6 1.7 hypothetical protein compare
MPMX19_03728 +0.6 1.2 hypothetical protein compare
MPMX19_03072 +0.6 0.9 hypothetical protein compare
MPMX19_03934 +0.5 1.6 hypothetical protein compare
MPMX19_06610 +0.5 1.1 hypothetical protein compare
MPMX19_02787 +0.5 2.4 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_04396 +0.5 2.1 HTH-type transcriptional regulator HmrR compare
MPMX19_02816 +0.5 1.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03939 +0.5 1.9 Enoyl-CoA-hydratase compare
MPMX19_05015 +0.5 2.8 hypothetical protein compare
MPMX19_05622 +0.5 4.0 Sensor histidine kinase RegB compare
MPMX19_04508 +0.5 1.6 Phosphoglycolate phosphatase compare
MPMX19_00208 +0.5 1.1 hypothetical protein compare
MPMX19_05996 +0.5 1.9 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_03549 +0.5 1.2 HTH-type transcriptional regulator PgrR compare
MPMX19_06272 +0.5 0.6 hypothetical protein compare
MPMX19_01235 +0.5 1.5 hypothetical protein compare
MPMX19_02778 +0.5 1.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06471 +0.5 1.6 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_05575 +0.5 1.8 hypothetical protein compare
MPMX19_00852 +0.5 1.0 hypothetical protein compare
MPMX19_06524 +0.5 2.9 hypothetical protein compare
MPMX19_03642 +0.5 0.9 hypothetical protein compare
MPMX19_06825 +0.5 3.0 hypothetical protein compare
MPMX19_06948 +0.5 2.6 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_04158 +0.5 2.8 hypothetical protein compare
MPMX19_03715 +0.5 1.9 Response regulator ArlR compare
MPMX19_06437 +0.5 1.4 DNA-invertase hin compare
MPMX19_04408 +0.5 1.4 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
MPMX19_02063 +0.5 2.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02248 +0.5 1.9 hypothetical protein compare
MPMX19_02424 +0.5 1.5 hypothetical protein compare
MPMX19_05195 +0.5 2.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06230 +0.5 0.7 hypothetical protein compare
MPMX19_04243 +0.5 2.2 2,3-dehydroadipyl-CoA hydratase compare
MPMX19_03019 +0.5 1.8 hypothetical protein compare
MPMX19_01832 +0.5 1.7 hypothetical protein compare
MPMX19_06901 +0.5 2.4 Alpha-ketoglutaric semialdehyde dehydrogenase compare
MPMX19_04584 +0.5 1.8 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04579 +0.5 1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_05375 +0.5 2.2 hypothetical protein compare
MPMX19_04282 +0.5 2.7 hypothetical protein compare
MPMX19_02811 +0.5 2.0 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_04257 +0.5 2.8 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase compare
MPMX19_04728 +0.5 2.5 Aminodeoxychorismate synthase component 1 compare
MPMX19_06420 +0.5 1.8 hypothetical protein compare
MPMX19_00544 +0.5 1.2 hypothetical protein compare
MPMX19_01385 +0.5 2.3 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_05593 +0.5 2.2 Pyrrolidone-carboxylate peptidase compare
MPMX19_02109 +0.5 1.8 hypothetical protein compare
MPMX19_00025 +0.4 0.9 hypothetical protein compare
MPMX19_05762 +0.4 1.2 hypothetical protein compare
MPMX19_03710 +0.4 1.8 Glycine cleavage system transcriptional activator compare
MPMX19_04240 +0.4 1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05623 +0.4 1.8 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_05205 +0.4 1.8 hypothetical protein compare
MPMX19_03329 +0.4 1.7 hypothetical protein compare
MPMX19_03375 +0.4 2.0 Outer membrane protein TolC compare
MPMX19_02779 +0.4 1.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00957 +0.4 2.2 Phosphoribosyl-ATP pyrophosphatase compare
MPMX19_06340 +0.4 1.8 hypothetical protein compare
MPMX19_00085 +0.4 1.9 hypothetical protein compare
MPMX19_02804 +0.4 1.0 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_03620 +0.4 1.9 hypothetical protein compare
MPMX19_05850 +0.4 1.2 hypothetical protein compare
MPMX19_04058 +0.4 1.4 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_03591 +0.4 1.7 2-oxo-tetronate isomerase compare
MPMX19_00206 +0.4 3.1 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_02835 +0.4 1.7 Phosphoribosyl-dephospho-CoA transferase compare
MPMX19_00716 +0.4 2.6 Hydrogenase maturation factor HypD compare
MPMX19_01217 +0.4 1.4 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_00244 +0.4 1.7 hypothetical protein compare
MPMX19_05920 +0.4 2.6 Flagellar motor switch protein FliG compare
MPMX19_04120 +0.4 1.5 hypothetical protein compare
MPMX19_04990 +0.4 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_05606 +0.4 1.3 hypothetical protein compare
MPMX19_04449 +0.4 0.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_01475 +0.4 2.1 hypothetical protein compare
MPMX19_05599 +0.4 1.7 hypothetical protein compare
MPMX19_06539 +0.4 0.9 hypothetical protein compare
MPMX19_03073 +0.4 1.2 hypothetical protein compare
MPMX19_02700 +0.4 1.3 hypothetical protein compare
MPMX19_03862 +0.4 1.4 hypothetical protein compare
MPMX19_04332 +0.4 1.9 hypothetical protein compare
MPMX19_04393 +0.4 1.3 hypothetical protein compare
MPMX19_01947 +0.4 1.2 Chemotaxis protein CheY compare
MPMX19_03884 +0.4 1.5 hypothetical protein compare
MPMX19_04043 +0.4 1.3 Aldehyde-alcohol dehydrogenase compare
MPMX19_03752 +0.4 0.7 hypothetical protein compare
MPMX19_06405 +0.4 2.2 hypothetical protein compare
MPMX19_02880 +0.4 1.8 hypothetical protein compare
MPMX19_02797 +0.4 2.2 2,3-dimethylmalate lyase compare
MPMX19_06770 +0.4 1.7 NAD-dependent glycerol dehydrogenase compare
MPMX19_03283 +0.4 3.0 Glutamate-1-semialdehyde 2,1-aminomutase compare
MPMX19_04549 +0.4 1.7 L-cystine-binding protein FliY compare
MPMX19_03473 +0.4 2.0 hypothetical protein compare
MPMX19_01759 +0.4 2.1 putative HTH-type transcriptional regulator compare
MPMX19_06199 +0.4 1.5 GTPase HflX compare
MPMX19_06520 +0.4 1.0 Nitrate import ATP-binding protein NrtC compare
MPMX19_06081 +0.4 2.8 Sensor histidine kinase RcsC compare
MPMX19_04743 +0.4 1.5 Formyltransferase/hydrolase complex subunit D compare
MPMX19_05016 +0.4 0.9 Sensor histidine kinase RcsC compare
MPMX19_00543 +0.4 1.2 Molybdenum cofactor guanylyltransferase compare
MPMX19_03819 +0.4 1.7 NADP-reducing hydrogenase subunit HndA compare
MPMX19_05929 +0.4 2.8 Siroheme synthase compare
MPMX19_01270 +0.4 1.7 L-threonine ammonia-lyase compare
MPMX19_04048 +0.4 2.0 putative N-acetyltransferase YafP compare
MPMX19_01454 +0.4 0.9 hypothetical protein compare
MPMX19_01141 +0.4 1.8 hypothetical protein compare
MPMX19_05650 +0.4 1.8 Ribonuclease HII compare
MPMX19_06197 +0.4 0.5 hypothetical protein compare
MPMX19_00064 +0.4 2.0 hypothetical protein compare
MPMX19_02973 +0.4 1.5 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare
MPMX19_01729 +0.4 0.8 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_01415 +0.4 1.2 hypothetical protein compare
MPMX19_04788 +0.4 2.4 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_04731 +0.4 1.8 hypothetical protein compare
MPMX19_03368 +0.4 1.9 hypothetical protein compare
MPMX19_01373 +0.4 1.9 hypothetical protein compare
MPMX19_05364 +0.4 1.9 Acetate CoA-transferase subunit beta compare
MPMX19_04750 +0.4 1.6 hypothetical protein compare
MPMX19_01727 +0.4 1.2 hypothetical protein compare
MPMX19_00763 +0.4 2.4 hypothetical protein compare
MPMX19_04693 +0.4 1.3 hypothetical protein compare
MPMX19_04715 +0.4 2.1 hypothetical protein compare
MPMX19_04735 +0.4 1.5 hypothetical protein compare
MPMX19_03052 +0.4 2.1 hypothetical protein compare
MPMX19_04064 +0.4 1.9 hypothetical protein compare
MPMX19_03287 +0.4 1.8 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_00209 +0.4 2.1 Cbb3-type cytochrome c oxidase subunit FixP compare
MPMX19_03888 +0.4 2.6 Glutathione hydrolase-like YwrD proenzyme compare
MPMX19_06500 +0.4 2.4 hypothetical protein compare
MPMX19_02188 +0.4 1.8 hypothetical protein compare
MPMX19_05586 +0.4 0.7 hypothetical protein compare
MPMX19_03694 +0.4 0.9 hypothetical protein compare
MPMX19_04554 +0.4 1.4 Response regulator PleD compare
MPMX19_05203 +0.4 1.1 hypothetical protein compare
MPMX19_06763 +0.4 1.2 hypothetical protein compare
MPMX19_00334 +0.4 1.0 hypothetical protein compare
MPMX19_00878 +0.4 1.8 Guanidinium exporter compare
MPMX19_04723 +0.4 2.1 Protein FixB compare
MPMX19_00956 +0.4 1.3 hypothetical protein compare
MPMX19_05936 +0.4 1.2 Alpha-galactosidase compare
MPMX19_00619 +0.3 1.2 Diacetyl reductase [(S)-acetoin forming] compare
MPMX19_04106 +0.3 2.4 hypothetical protein compare
MPMX19_06198 +0.3 1.3 hypothetical protein compare
MPMX19_03371 +0.3 1.3 hypothetical protein compare
MPMX19_06453 +0.3 1.7 hypothetical protein compare
MPMX19_04144 +0.3 1.9 putative manganese efflux pump MntP compare
MPMX19_04053 +0.3 1.4 Transcriptional regulatory protein OmpR compare
MPMX19_04460 +0.3 1.9 Pyruvate kinase compare
MPMX19_04670 +0.3 1.6 hypothetical protein compare
MPMX19_04099 +0.3 1.4 Chemotaxis protein CheY compare
MPMX19_01755 +0.3 1.1 hypothetical protein compare
MPMX19_05834 +0.3 1.0 Hydrogen peroxide-inducible genes activator compare
MPMX19_02974 +0.3 1.4 3-oxo-isoapionate kinase compare
MPMX19_06737 +0.3 1.3 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_01445 +0.3 1.3 hypothetical protein compare
MPMX19_03306 +0.3 1.2 hypothetical protein compare
MPMX19_02310 +0.3 1.1 hypothetical protein compare
MPMX19_02548 +0.3 1.8 ATP-dependent protease subunit HslV compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms