Experiment set1S439 for Phocaeicola dorei CL03T12C01

Compare to:

amylopectin from maize carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02980 -7.5 -6.5 N-acetyltransferase compare
ABI39_RS07005 -7.4 -2.9 type II 3-dehydroquinate dehydratase compare
ABI39_RS12415 -7.4 -3.2 biotin/lipoyl-binding protein compare
ABI39_RS02975 -7.1 -7.7 argininosuccinate synthase compare
ABI39_RS04695 -7.0 -4.4 shikimate kinase compare
ABI39_RS21065 -6.9 -4.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS04460 -6.9 -12.5 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS06010 -6.9 -6.2 polysaccharide deacetylase family protein compare
ABI39_RS10205 -6.8 -4.3 3-isopropylmalate dehydratase small subunit compare
ABI39_RS04475 -6.7 -16.5 alpha-amylase compare
ABI39_RS04685 -6.6 -4.8 acetylglutamate kinase compare
ABI39_RS04425 -6.6 -13.2 hypothetical protein compare
ABI39_RS10505 -6.5 -10.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10500 -6.4 -3.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS02970 -6.2 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS05660 -6.1 -8.6 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS08195 -6.0 -4.8 hypothetical protein compare
ABI39_RS06670 -5.8 -13.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS12645 -5.8 -12.2 chorismate synthase compare
ABI39_RS10510 -5.8 -7.1 prephenate dehydratase compare
ABI39_RS02875 -5.8 -8.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10195 -5.8 -9.4 2-isopropylmalate synthase compare
ABI39_RS21060 -5.8 -6.4 anthranilate phosphoribosyltransferase compare
ABI39_RS12720 -5.7 -11.5 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS19930 -5.7 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS21050 -5.6 -5.5 anthranilate synthase component I family protein compare
ABI39_RS10495 -5.6 -5.5 prephenate dehydrogenase compare
ABI39_RS19925 -5.5 -5.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS19935 -5.5 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS14240 -5.5 -3.4 biotin synthase BioB compare
ABI39_RS12665 -5.4 -7.4 shikimate dehydrogenase compare
ABI39_RS07095 -5.4 -14.7 argininosuccinate lyase compare
ABI39_RS02315 -5.4 -8.8 IMP dehydrogenase compare
ABI39_RS12715 -5.3 -11.8 dihydroxy-acid dehydratase compare
ABI39_RS01360 -5.3 -7.3 hypothetical protein compare
ABI39_RS16910 -5.3 -7.8 3-phosphoglycerate dehydrogenase compare
ABI39_RS04455 -5.3 -14.8 TonB-dependent receptor compare
ABI39_RS02870 -5.2 -5.7 acetylornithine carbamoyltransferase compare
ABI39_RS11835 -5.2 -5.7 histidinol dehydrogenase compare
ABI39_RS06675 -5.2 -7.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS14255 -5.0 -2.6 DUF452 family protein compare
ABI39_RS08305 -5.0 -5.3 DUF4831 family protein compare
ABI39_RS15610 -5.0 -0.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS16905 -5.0 -7.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12725 -5.0 -4.7 acetolactate synthase small subunit compare
ABI39_RS07790 -4.9 -6.6 M20 family metallo-hydrolase compare
ABI39_RS10430 -4.9 -11.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS10110 -4.9 -11.0 S9 family peptidase compare
ABI39_RS12425 -4.8 -9.2 acyl-CoA carboxylase subunit beta compare
ABI39_RS10200 -4.8 -11.9 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02960 -4.8 -9.5 pyrroline-5-carboxylate reductase compare
ABI39_RS15320 -4.8 -9.0 PorT family protein compare
ABI39_RS11845 -4.7 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS10215 -4.7 -9.0 3-isopropylmalate dehydrogenase compare
ABI39_RS01655 -4.7 -8.6 methylmalonyl-CoA mutase compare
ABI39_RS21045 -4.6 -5.6 tryptophan synthase subunit beta compare
ABI39_RS16315 -4.6 -0.8 conjugative transposon protein TraK compare
ABI39_RS20355 -4.6 -13.9 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS09575 -4.6 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS01650 -4.5 -7.7 methylmalonyl-CoA mutase small subunit compare
ABI39_RS14265 -4.5 -6.1 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS06995 -4.5 -7.1 tetratricopeptide repeat protein compare
ABI39_RS08850 -4.5 -3.8 toprim domain-containing protein compare
ABI39_RS02880 -4.5 -8.3 glutamate 5-kinase compare
ABI39_RS00770 -4.4 -11.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS16040 -4.3 -0.8 hypothetical protein compare
ABI39_RS21075 -4.3 -4.8 tryptophan synthase subunit alpha compare
ABI39_RS04245 -4.3 -1.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS11545 -4.3 -7.7 hypothetical protein compare
ABI39_RS02290 -4.3 -2.2 hypothetical protein compare
ABI39_RS15410 -4.3 -6.5 DUF4296 domain-containing protein compare
ABI39_RS10210 -4.2 -7.4 2-isopropylmalate synthase compare
ABI39_RS10440 -4.2 -4.8 threonine synthase compare
ABI39_RS11830 -4.2 -3.9 ATP phosphoribosyltransferase compare
ABI39_RS13170 -4.2 -9.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS09245 -4.2 -9.6 cardiolipin synthase compare
ABI39_RS10085 -4.1 -2.8 enoyl-ACP reductase compare
ABI39_RS04280 -4.0 -5.2 DUF4292 domain-containing protein compare
ABI39_RS12735 -4.0 -5.6 ketol-acid reductoisomerase compare
ABI39_RS06380 -4.0 -6.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS10435 -4.0 -7.8 cofactor-independent phosphoglycerate mutase compare
ABI39_RS18740 -4.0 -5.4 ATP-binding protein compare
ABI39_RS19985 -4.0 -1.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS17755 -3.9 -2.2 thiazole synthase compare
ABI39_RS18330 -3.9 -8.9 PD40 domain-containing protein compare
ABI39_RS00205 -3.9 -2.4 phosphoglucosamine mutase compare
ABI39_RS18165 -3.8 -1.0 DUF5024 domain-containing protein compare
ABI39_RS12770 -3.8 -1.8 hypothetical protein compare
ABI39_RS20930 -3.7 -11.9 tetratricopeptide repeat protein compare
ABI39_RS00090 -3.7 -4.5 HAMP domain-containing histidine kinase compare
ABI39_RS20175 -3.7 -1.8 translation elongation factor 4 compare
ABI39_RS11140 -3.6 -0.9 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS11840 -3.6 -4.9 histidinol-phosphate transaminase compare
ABI39_RS17640 -3.6 -3.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS08035 -3.6 -2.3 adenylosuccinate lyase compare
ABI39_RS19385 -3.5 -2.1 hypothetical protein compare
ABI39_RS17175 -3.5 -5.5 tetratricopeptide repeat protein compare
ABI39_RS17170 -3.5 -1.9 protein BatD compare
ABI39_RS14245 -3.5 -8.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS15775 -3.5 -2.0 hypothetical protein compare
ABI39_RS17950 -3.5 -1.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS17420 -3.5 -6.2 serine hydroxymethyltransferase compare
ABI39_RS04465 -3.5 -7.4 SusF/SusE family outer membrane protein compare
ABI39_RS07090 -3.5 -4.3 hypothetical protein compare
ABI39_RS10640 -3.4 -9.7 serine dehydratase subunit alpha family protein compare
ABI39_RS02470 -3.4 -4.5 ATP-dependent DNA helicase RecG compare
ABI39_RS18745 -3.4 -6.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS17140 -3.4 -2.1 AAA family ATPase compare
ABI39_RS03320 -3.3 -5.6 FecR domain-containing protein compare
ABI39_RS18910 -3.3 -1.0 preprotein translocase subunit YajC compare
ABI39_RS10260 -3.3 -7.8 adenylosuccinate synthase compare
ABI39_RS02500 -3.2 -6.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS09515 -3.2 -3.0 nucleoside deaminase compare
ABI39_RS10650 -3.2 -12.3 AraC family transcriptional regulator compare
ABI39_RS20860 -3.2 -1.1 HU family DNA-binding protein compare
ABI39_RS02055 -3.2 -7.8 BamA/TamA family outer membrane protein compare
ABI39_RS07010 -3.2 -1.6 pyruvate kinase compare
ABI39_RS04690 -3.2 -10.2 biosynthetic arginine decarboxylase compare
ABI39_RS14235 -3.1 -1.8 hypothetical protein compare
ABI39_RS01725 -3.1 -2.1 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS14560 -3.1 -2.2 aspartate 1-decarboxylase compare
ABI39_RS14250 -3.0 -5.3 8-amino-7-oxononanoate synthase compare
ABI39_RS15770 -3.0 -1.2 hypothetical protein compare
ABI39_RS04970 -3.0 -5.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS14260 -3.0 -6.0 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS13835 -3.0 -2.1 DUF3037 domain-containing protein compare
ABI39_RS19950 -2.9 -3.1 diaminopimelate decarboxylase compare
ABI39_RS04700 -2.9 -1.8 type I DNA topoisomerase compare
ABI39_RS06250 -2.9 -9.2 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS06055 -2.9 -4.3 phosphoribosylamine--glycine ligase compare
ABI39_RS12420 -2.9 -3.8 OadG family protein compare
ABI39_RS15265 -2.9 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS15415 -2.8 -3.4 hypothetical protein compare
ABI39_RS02755 -2.8 -2.3 glycosyltransferase compare
ABI39_RS06625 -2.8 -3.4 rhomboid family intramembrane serine protease compare
ABI39_RS17310 -2.8 -9.3 hypothetical protein compare
ABI39_RS22955 -2.8 -1.6 hypothetical protein compare
ABI39_RS16305 -2.8 -0.7 DUF4141 domain-containing protein compare
ABI39_RS21185 -2.7 -7.5 ROK family transcriptional regulator compare
ABI39_RS05655 -2.7 -4.0 hypothetical protein compare
ABI39_RS04430 -2.7 -4.4 glycoside hydrolase family 13 protein compare
ABI39_RS04930 -2.7 -2.4 helix-turn-helix transcriptional regulator compare
ABI39_RS02060 -2.7 -8.8 translocation/assembly module TamB domain-containing protein compare
ABI39_RS17965 -2.6 -2.6 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS05175 -2.6 -4.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS13990 -2.6 -5.6 hypothetical protein compare
ABI39_RS04950 -2.6 -1.8 DEAD/DEAH box helicase compare
ABI39_RS08555 -2.6 -5.3 Trk system potassium transporter TrkA compare
ABI39_RS15615 -2.6 -1.6 cysteine-rich CWC family protein compare
ABI39_RS01735 -2.6 -5.1 acyl-CoA dehydrogenase family protein compare
ABI39_RS09830 -2.5 -5.4 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS06050 -2.5 -4.8 hypothetical protein compare
ABI39_RS12430 -2.5 -0.8 methylmalonyl-CoA epimerase compare
ABI39_RS02480 -2.5 -2.5 DJ-1/PfpI family protein compare
ABI39_RS15855 -2.5 -2.4 helix-turn-helix transcriptional regulator compare
ABI39_RS13855 -2.5 -3.8 response regulator transcription factor compare
ABI39_RS12955 -2.5 -4.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS17160 -2.5 -2.2 VWA domain-containing protein compare
ABI39_RS16700 -2.5 -5.1 agmatine deiminase family protein compare
ABI39_RS17130 -2.5 -0.7 HU family DNA-binding protein compare
ABI39_RS02965 -2.4 -9.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06235 -2.4 -5.4 UDP-galactopyranose mutase compare
ABI39_RS01415 -2.4 -2.1 branched-chain amino acid aminotransferase compare
ABI39_RS04135 -2.4 -10.4 mannose-1-phosphate guanylyltransferase compare
ABI39_RS12675 -2.4 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS09845 -2.4 -1.2 (d)CMP kinase compare
ABI39_RS09230 -2.4 -1.4 hypothetical protein compare
ABI39_RS04795 -2.4 -1.2 M28 family peptidase compare
ABI39_RS12140 -2.4 -5.2 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
ABI39_RS05280 -2.3 -8.7 S41 family peptidase compare
ABI39_RS13265 -2.2 -1.8 hypothetical protein compare
ABI39_RS15010 -2.2 -1.6 F0F1 ATP synthase subunit gamma compare
ABI39_RS15400 -2.1 -5.3 TraR/DksA C4-type zinc finger protein compare
ABI39_RS22225 -2.1 -0.9 hypothetical protein compare
ABI39_RS17770 -2.1 -2.9 flavodoxin family protein compare
ABI39_RS17180 -2.1 -4.2 phosphatase PAP2 family protein compare
ABI39_RS12755 -2.1 -3.0 SurA N-terminal domain-containing protein compare
ABI39_RS17320 -2.1 -1.6 YhcH/YjgK/YiaL family protein compare
ABI39_RS00240 -2.1 -1.6 NigD-like N-terminal domain-containing protein compare
ABI39_RS02355 -2.1 -4.1 ABC transporter ATP-binding protein compare
ABI39_RS19920 -2.0 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS11655 -2.0 -2.7 MFS transporter compare
ABI39_RS22135 -2.0 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS01300 -2.0 -8.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS01730 -2.0 -4.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS20095 -1.9 -9.1 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS19020 -1.9 -10.9 response regulator compare
ABI39_RS06920 -1.9 -3.8 glycosyltransferase compare
ABI39_RS04885 -1.9 -3.4 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS07815 -1.9 -1.6 RNA polymerase sigma factor compare
ABI39_RS17150 -1.9 -2.8 hypothetical protein compare
ABI39_RS10090 -1.9 -8.2 hypothetical protein compare
ABI39_RS05650 -1.9 -7.0 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABI39_RS21685 -1.9 -1.3 hypothetical protein compare
ABI39_RS16695 -1.9 -6.5 carbon-nitrogen hydrolase compare
ABI39_RS21350 -1.9 -0.9 aspartate--ammonia ligase compare
ABI39_RS20080 -1.9 -6.2 electron transport complex subunit RsxA compare
ABI39_RS12980 -1.9 -2.2 HAD family hydrolase compare
ABI39_RS06990 -1.9 -9.1 DUF4369 domain-containing protein compare
ABI39_RS02350 -1.9 -5.0 ABC transporter permease compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source amylopectin from maize in Phocaeicola dorei CL03T12C01

For carbon source amylopectin from maize across organisms