Experiment set1S439 for Phocaeicola dorei CL03T12C01

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amylopectin from maize carbon source

Group: carbon source
Media: Varel_Bryant_medium + amylopectin from maize (5 mg/mL)
Culturing: Bdorei_CL03T12C01_ML9, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya on 10/1/23
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 6 genes in this experiment

For carbon source amylopectin from maize in Phocaeicola dorei CL03T12C01

For carbon source amylopectin from maize across organisms

SEED Subsystems

Subsystem #Specific
Rhamnose containing glycans 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pyrimidine ribonucleosides salvage I 3 3 2
superpathway of pyrimidine ribonucleosides salvage 10 9 2
nucleoside and nucleotide degradation (archaea) 10 4 1