Experiment set1S433 for Phocaeicola dorei CL03T12C01

Compare to:

Xylan from Beechwood carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -9.8 -6.8 acetylornithine carbamoyltransferase compare
ABI39_RS19930 -9.7 -6.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02875 -9.1 -8.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02970 -8.9 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS16910 -8.7 -8.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS04695 -8.6 -5.9 shikimate kinase compare
ABI39_RS04685 -8.6 -7.9 acetylglutamate kinase compare
ABI39_RS02960 -8.4 -12.7 pyrroline-5-carboxylate reductase compare
ABI39_RS10510 -8.3 -8.1 prephenate dehydratase compare
ABI39_RS10495 -8.3 -8.0 prephenate dehydrogenase compare
ABI39_RS02975 -8.1 -9.5 argininosuccinate synthase compare
ABI39_RS02880 -8.1 -10.0 glutamate 5-kinase compare
ABI39_RS12645 -8.0 -12.2 chorismate synthase compare
ABI39_RS12425 -7.9 -5.5 acyl-CoA carboxylase subunit beta compare
ABI39_RS10440 -7.7 -8.1 threonine synthase compare
ABI39_RS19925 -7.6 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS07095 -7.6 -23.3 argininosuccinate lyase compare
ABI39_RS20445 -7.5 -8.0 xylose isomerase compare
ABI39_RS07790 -7.4 -7.6 M20 family metallo-hydrolase compare
ABI39_RS10435 -7.3 -11.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS16905 -7.3 -14.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02980 -7.3 -8.7 N-acetyltransferase compare
ABI39_RS10500 -7.2 -5.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10215 -7.1 -10.4 3-isopropylmalate dehydrogenase compare
ABI39_RS12415 -7.0 -6.3 biotin/lipoyl-binding protein compare
ABI39_RS21060 -7.0 -8.8 anthranilate phosphoribosyltransferase compare
ABI39_RS12665 -6.9 -6.8 shikimate dehydrogenase compare
ABI39_RS01655 -6.9 -11.6 methylmalonyl-CoA mutase compare
ABI39_RS10430 -6.7 -16.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12715 -6.6 -13.0 dihydroxy-acid dehydratase compare
ABI39_RS10505 -6.6 -10.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10110 -6.6 -9.0 S9 family peptidase compare
ABI39_RS21065 -6.5 -7.8 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12420 -6.5 -8.5 OadG family protein compare
ABI39_RS05660 -6.5 -10.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS21075 -6.4 -6.2 tryptophan synthase subunit alpha compare
ABI39_RS12720 -6.4 -16.5 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10200 -6.2 -14.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10260 -6.2 -11.4 adenylosuccinate synthase compare
ABI39_RS11405 -6.1 -11.0 hypothetical protein compare
ABI39_RS11845 -6.1 -9.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS01360 -6.1 -8.4 hypothetical protein compare
ABI39_RS21050 -6.1 -8.5 anthranilate synthase component I family protein compare
ABI39_RS12735 -6.1 -8.4 ketol-acid reductoisomerase compare
ABI39_RS06010 -6.0 -10.6 polysaccharide deacetylase family protein compare
ABI39_RS11835 -6.0 -9.1 histidinol dehydrogenase compare
ABI39_RS10195 -6.0 -9.7 2-isopropylmalate synthase compare
ABI39_RS00170 -5.9 -9.4 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS20070 -5.8 -5.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS01650 -5.8 -9.1 methylmalonyl-CoA mutase small subunit compare
ABI39_RS06670 -5.7 -14.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS04795 -5.7 -3.1 M28 family peptidase compare
ABI39_RS11840 -5.6 -7.7 histidinol-phosphate transaminase compare
ABI39_RS11830 -5.6 -5.4 ATP phosphoribosyltransferase compare
ABI39_RS18745 -5.5 -3.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS21045 -5.4 -7.7 tryptophan synthase subunit beta compare
ABI39_RS06675 -5.4 -9.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS09575 -5.3 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS12430 -5.3 -1.7 methylmalonyl-CoA epimerase compare
ABI39_RS19385 -5.3 -4.8 hypothetical protein compare
ABI39_RS18330 -5.2 -11.2 PD40 domain-containing protein compare
ABI39_RS08195 -5.2 -6.4 hypothetical protein compare
ABI39_RS06995 -5.2 -7.8 tetratricopeptide repeat protein compare
ABI39_RS10205 -5.2 -5.3 3-isopropylmalate dehydratase small subunit compare
ABI39_RS00185 -5.2 -7.9 glycoside hydrolase family 43 protein compare
ABI39_RS00175 -5.1 -13.8 TonB-dependent receptor compare
ABI39_RS07005 -5.1 -4.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS20450 -5.0 -10.9 carbohydrate kinase compare
ABI39_RS15275 -5.0 -11.6 mannonate dehydratase compare
ABI39_RS17140 -5.0 -3.4 AAA family ATPase compare
ABI39_RS00770 -4.9 -12.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12675 -4.9 -8.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02315 -4.9 -10.7 IMP dehydrogenase compare
ABI39_RS12725 -4.9 -5.5 acetolactate synthase small subunit compare
ABI39_RS10640 -4.8 -11.0 serine dehydratase subunit alpha family protein compare
ABI39_RS15410 -4.8 -4.5 DUF4296 domain-containing protein compare
ABI39_RS00165 -4.7 -15.1 response regulator compare
ABI39_RS12770 -4.6 -3.2 hypothetical protein compare
ABI39_RS09830 -4.6 -8.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS00475 -4.6 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS06055 -4.6 -6.9 phosphoribosylamine--glycine ligase compare
ABI39_RS17170 -4.5 -3.1 protein BatD compare
ABI39_RS17175 -4.5 -6.9 tetratricopeptide repeat protein compare
ABI39_RS08305 -4.5 -7.8 DUF4831 family protein compare
ABI39_RS08850 -4.5 -4.4 toprim domain-containing protein compare
ABI39_RS02290 -4.4 -4.5 hypothetical protein compare
ABI39_RS18910 -4.2 -2.3 preprotein translocase subunit YajC compare
ABI39_RS17160 -4.2 -2.9 VWA domain-containing protein compare
ABI39_RS01415 -4.2 -2.9 branched-chain amino acid aminotransferase compare
ABI39_RS00205 -4.0 -4.8 phosphoglucosamine mutase compare
ABI39_RS00405 -4.0 -15.7 phosphoribosylformylglycinamidine synthase compare
ABI39_RS08035 -3.9 -3.8 adenylosuccinate lyase compare
ABI39_RS09850 -3.9 -5.7 energy transducer TonB compare
ABI39_RS01725 -3.8 -4.5 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS19950 -3.8 -4.4 diaminopimelate decarboxylase compare
ABI39_RS02755 -3.8 -4.4 glycosyltransferase compare
ABI39_RS22955 -3.7 -3.2 hypothetical protein compare
ABI39_RS09515 -3.7 -5.0 nucleoside deaminase compare
ABI39_RS06380 -3.7 -7.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS12755 -3.6 -2.5 SurA N-terminal domain-containing protein compare
ABI39_RS17950 -3.6 -3.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS00190 -3.6 -8.4 endo-1,4-beta-xylanase compare
ABI39_RS00195 -3.3 -11.3 MFS transporter compare
ABI39_RS20085 -3.3 -8.8 electron transport complex subunit E compare
ABI39_RS00090 -3.3 -6.7 HAMP domain-containing histidine kinase compare
ABI39_RS20100 -3.2 -7.5 electron transport complex subunit RsxC compare
ABI39_RS20080 -3.2 -8.8 electron transport complex subunit RsxA compare
ABI39_RS14030 -3.2 -5.8 MFS transporter compare
ABI39_RS01730 -3.2 -5.8 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS18740 -3.2 -7.6 ATP-binding protein compare
ABI39_RS09845 -3.1 -2.2 (d)CMP kinase compare
ABI39_RS14560 -3.1 -5.2 aspartate 1-decarboxylase compare
ABI39_RS20105 -3.1 -7.5 Fe-S cluster domain-containing protein compare
ABI39_RS20095 -3.1 -11.9 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS19935 -3.1 -8.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS04700 -3.1 -3.6 type I DNA topoisomerase compare
ABI39_RS09245 -3.0 -10.4 cardiolipin synthase compare
ABI39_RS04230 -3.0 -6.6 RNA polymerase factor sigma-54 compare
ABI39_RS15320 -3.0 -14.3 PorT family protein compare
ABI39_RS15505 -3.0 -7.1 ABC transporter ATP-binding protein compare
ABI39_RS04930 -3.0 -2.6 helix-turn-helix transcriptional regulator compare
ABI39_RS13185 -3.0 -1.8 manganese efflux pump compare
ABI39_RS09685 -2.9 -2.6 hypothetical protein compare
ABI39_RS17205 -2.9 -3.9 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS20090 -2.9 -7.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS15525 -2.9 -8.4 precorrin-3B C(17)-methyltransferase compare
ABI39_RS15490 -2.8 -8.4 precorrin-2 C(20)-methyltransferase compare
ABI39_RS21350 -2.8 -1.9 aspartate--ammonia ligase compare
ABI39_RS04690 -2.8 -6.3 biosynthetic arginine decarboxylase compare
ABI39_RS05765 -2.8 -3.5 DUF4294 domain-containing protein compare
ABI39_RS15495 -2.8 -8.3 ABC transporter substrate-binding protein compare
ABI39_RS15375 -2.8 -10.1 sugar kinase compare
ABI39_RS16460 -2.7 -10.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS04280 -2.6 -4.2 DUF4292 domain-containing protein compare
ABI39_RS04245 -2.6 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS15265 -2.6 -3.5 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS13180 -2.6 -6.0 FAD:protein FMN transferase compare
ABI39_RS16450 -2.6 -7.3 adenosylcobinamide-GDP ribazoletransferase compare
ABI39_RS03005 -2.5 -13.1 rhamnulose-1-phosphate aldolase compare
ABI39_RS06220 -2.5 -11.3 glycosyltransferase family 2 protein compare
ABI39_RS15515 -2.5 -10.7 precorrin-4 C(11)-methyltransferase compare
ABI39_RS07090 -2.5 -1.2 hypothetical protein compare
ABI39_RS01300 -2.5 -10.1 NADP-specific glutamate dehydrogenase compare
ABI39_RS01735 -2.4 -7.1 acyl-CoA dehydrogenase family protein compare
ABI39_RS06235 -2.4 -7.1 UDP-galactopyranose mutase compare
ABI39_RS07010 -2.4 -3.2 pyruvate kinase compare
ABI39_RS15670 -2.4 -9.2 cobalamin biosynthesis protein CobD compare
ABI39_RS15650 -2.4 -10.7 cobyrinate a,c-diamide synthase compare
ABI39_RS17150 -2.4 -3.5 hypothetical protein compare
ABI39_RS03320 -2.4 -9.1 FecR domain-containing protein compare
ABI39_RS11670 -2.4 -2.9 molecular chaperone DnaJ compare
ABI39_RS15500 -2.4 -6.3 iron ABC transporter permease compare
ABI39_RS06115 -2.4 -9.0 phosphatase PAP2 family protein compare
ABI39_RS15380 -2.3 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS05175 -2.3 -7.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS15665 -2.3 -4.9 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS10650 -2.3 -12.6 AraC family transcriptional regulator compare
ABI39_RS16315 -2.3 -1.4 conjugative transposon protein TraK compare
ABI39_RS02355 -2.2 -7.5 ABC transporter ATP-binding protein compare
ABI39_RS15660 -2.2 -9.1 cobyric acid synthase compare
ABI39_RS04860 -2.2 -1.8 HigA family addiction module antidote protein compare
ABI39_RS17420 -2.1 -9.4 serine hydroxymethyltransferase compare
ABI39_RS20455 -2.1 -2.5 NUDIX hydrolase compare
ABI39_RS02470 -2.1 -4.5 ATP-dependent DNA helicase RecG compare
ABI39_RS11650 -2.1 -8.2 galactokinase compare
ABI39_RS06050 -2.0 -3.7 hypothetical protein compare
ABI39_RS11545 -2.0 -7.0 hypothetical protein compare
ABI39_RS09915 -2.0 -2.9 DUF5056 domain-containing protein compare
ABI39_RS16455 -2.0 -9.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABI39_RS04145 -2.0 -2.7 transcription elongation factor GreA compare
ABI39_RS02350 -2.0 -5.9 ABC transporter permease compare
ABI39_RS09195 -2.0 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS00410 -2.0 -3.4 response regulator compare
ABI39_RS15510 -2.0 -5.6 cobalt-precorrin-5B (C(1))-methyltransferase compare
ABI39_RS02965 -1.9 -11.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS20355 -1.9 -11.5 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS08230 -1.8 -7.2 MFS transporter compare
ABI39_RS10210 -1.8 -3.1 2-isopropylmalate synthase compare
ABI39_RS19945 -1.8 -4.5 aspartate kinase compare
ABI39_RS02500 -1.8 -6.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS12980 -1.8 -2.5 HAD family hydrolase compare
ABI39_RS09825 -1.8 -1.7 DUF1573 domain-containing protein compare
ABI39_RS00180 -1.7 -3.1 glycoside hydrolase family 43 protein compare
ABI39_RS19985 -1.7 -2.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS06250 -1.7 -10.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17335 -1.7 -10.1 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS04970 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS15610 -1.7 -1.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS22135 -1.6 -2.8 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS12955 -1.5 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS16695 -1.5 -8.1 carbon-nitrogen hydrolase compare
ABI39_RS15415 -1.5 -5.3 hypothetical protein compare
ABI39_RS18300 -1.5 -4.7 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS13000 -1.5 -3.9 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS06620 -1.5 -2.9 HU family DNA-binding protein compare
ABI39_RS20425 -1.5 -4.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABI39_RS09770 -1.5 -4.9 DUF349 domain-containing protein compare
ABI39_RS14245 -1.4 -8.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS17640 -1.4 -4.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS14250 -1.4 -5.8 8-amino-7-oxononanoate synthase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Xylan from Beechwood in Phocaeicola dorei CL03T12C01

For carbon source Xylan from Beechwood across organisms