Experiment set1S431 for Phocaeicola dorei CL03T12C01

Compare to:

Fructose-6-phosphate carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -7.0 -4.8 acetylornithine carbamoyltransferase compare
ABI39_RS02975 -6.9 -6.7 argininosuccinate synthase compare
ABI39_RS07095 -5.8 -14.5 argininosuccinate lyase compare
ABI39_RS19930 -5.7 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS02970 -5.6 -5.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS07790 -5.5 -7.6 M20 family metallo-hydrolase compare
ABI39_RS02980 -5.5 -7.5 N-acetyltransferase compare
ABI39_RS04685 -5.4 -7.5 acetylglutamate kinase compare
ABI39_RS21060 -5.4 -6.4 anthranilate phosphoribosyltransferase compare
ABI39_RS02875 -5.3 -8.9 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS16905 -5.2 -8.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS21065 -5.2 -6.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS07835 -5.1 -9.2 alkaline phosphatase compare
ABI39_RS08235 -5.1 -8.5 carbohydrate kinase compare
ABI39_RS02880 -4.9 -6.8 glutamate 5-kinase compare
ABI39_RS08230 -4.8 -10.4 MFS transporter compare
ABI39_RS11840 -4.5 -3.1 histidinol-phosphate transaminase compare
ABI39_RS10495 -4.5 -6.1 prephenate dehydrogenase compare
ABI39_RS10260 -4.4 -7.7 adenylosuccinate synthase compare
ABI39_RS10440 -4.4 -6.5 threonine synthase compare
ABI39_RS11835 -4.3 -4.2 histidinol dehydrogenase compare
ABI39_RS16910 -4.3 -7.3 3-phosphoglycerate dehydrogenase compare
ABI39_RS10430 -4.2 -11.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS19925 -4.0 -5.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10510 -3.9 -7.4 prephenate dehydratase compare
ABI39_RS14560 -3.9 -2.7 aspartate 1-decarboxylase compare
ABI39_RS21075 -3.9 -6.1 tryptophan synthase subunit alpha compare
ABI39_RS11845 -3.9 -4.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11830 -3.8 -3.7 ATP phosphoribosyltransferase compare
ABI39_RS04695 -3.8 -5.2 shikimate kinase compare
ABI39_RS12715 -3.8 -9.8 dihydroxy-acid dehydratase compare
ABI39_RS10500 -3.8 -3.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12645 -3.7 -9.2 chorismate synthase compare
ABI39_RS12720 -3.6 -10.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS19935 -3.6 -6.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12665 -3.6 -4.9 shikimate dehydrogenase compare
ABI39_RS05660 -3.6 -7.2 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10435 -3.5 -8.0 cofactor-independent phosphoglycerate mutase compare
ABI39_RS06670 -3.5 -11.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS10215 -3.4 -7.6 3-isopropylmalate dehydrogenase compare
ABI39_RS02315 -3.4 -6.1 IMP dehydrogenase compare
ABI39_RS02960 -3.4 -8.9 pyrroline-5-carboxylate reductase compare
ABI39_RS19985 -3.2 -2.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10205 -3.2 -3.4 3-isopropylmalate dehydratase small subunit compare
ABI39_RS07005 -3.2 -3.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS06055 -3.1 -6.2 phosphoribosylamine--glycine ligase compare
ABI39_RS21050 -3.1 -6.3 anthranilate synthase component I family protein compare
ABI39_RS00770 -3.0 -10.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS08240 -3.0 -9.7 substrate-binding domain-containing protein compare
ABI39_RS21045 -3.0 -4.6 tryptophan synthase subunit beta compare
ABI39_RS01650 -3.0 -6.4 methylmalonyl-CoA mutase small subunit compare
ABI39_RS02775 -2.9 -11.8 ATPase compare
ABI39_RS10505 -2.9 -9.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12735 -2.8 -6.0 ketol-acid reductoisomerase compare
ABI39_RS04795 -2.7 -1.9 M28 family peptidase compare
ABI39_RS10195 -2.7 -9.3 2-isopropylmalate synthase compare
ABI39_RS02785 -2.6 -13.9 hypothetical protein compare
ABI39_RS10200 -2.6 -10.4 3-isopropylmalate dehydratase large subunit compare
ABI39_RS06995 -2.5 -5.7 tetratricopeptide repeat protein compare
ABI39_RS06675 -2.4 -7.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS09575 -2.4 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS12425 -2.3 -7.3 acyl-CoA carboxylase subunit beta compare
ABI39_RS01360 -2.3 -5.1 hypothetical protein compare
ABI39_RS12725 -2.3 -4.4 acetolactate synthase small subunit compare
ABI39_RS12675 -2.2 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02500 -2.2 -5.5 pyridoxine 5'-phosphate synthase compare
ABI39_RS07090 -2.2 -2.1 hypothetical protein compare
ABI39_RS01655 -2.2 -7.0 methylmalonyl-CoA mutase compare
ABI39_RS10640 -2.1 -7.8 serine dehydratase subunit alpha family protein compare
ABI39_RS00090 -2.1 -2.1 HAMP domain-containing histidine kinase compare
ABI39_RS18330 -2.1 -6.3 PD40 domain-containing protein compare
ABI39_RS17420 -2.0 -5.1 serine hydroxymethyltransferase compare
ABI39_RS10110 -2.0 -7.1 S9 family peptidase compare
ABI39_RS17140 -1.9 -1.3 AAA family ATPase compare
ABI39_RS13835 -1.9 -2.2 DUF3037 domain-containing protein compare
ABI39_RS12385 -1.9 -2.8 transcriptional repressor compare
ABI39_RS05175 -1.9 -3.1 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS10210 -1.8 -4.7 2-isopropylmalate synthase compare
ABI39_RS12430 -1.8 -1.4 methylmalonyl-CoA epimerase compare
ABI39_RS01735 -1.8 -4.8 acyl-CoA dehydrogenase family protein compare
ABI39_RS00405 -1.8 -8.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS08305 -1.8 -4.6 DUF4831 family protein compare
ABI39_RS04970 -1.8 -2.4 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS00205 -1.7 -1.2 phosphoglucosamine mutase compare
ABI39_RS04690 -1.7 -4.7 biosynthetic arginine decarboxylase compare
ABI39_RS01725 -1.7 -2.8 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS12420 -1.6 -3.3 OadG family protein compare
ABI39_RS11405 -1.6 -5.5 hypothetical protein compare
ABI39_RS10870 -1.6 -7.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS06010 -1.6 -5.1 polysaccharide deacetylase family protein compare
ABI39_RS19945 -1.5 -6.7 aspartate kinase compare
ABI39_RS07500 -1.5 -1.7 hypothetical protein compare
ABI39_RS02780 -1.5 -2.9 phosphatase PAP2 family protein compare
ABI39_RS04280 -1.5 -2.8 DUF4292 domain-containing protein compare
ABI39_RS01300 -1.5 -5.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS00475 -1.5 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS08220 -1.5 -6.9 TonB-dependent receptor compare
ABI39_RS16485 -1.5 -1.8 hypothetical protein compare
ABI39_RS01730 -1.5 -4.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS14940 -1.5 -1.8 PepSY-like domain-containing protein compare
ABI39_RS20095 -1.5 -6.9 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS04245 -1.5 -1.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS08195 -1.5 -3.7 hypothetical protein compare
ABI39_RS15175 -1.5 -1.7 hypothetical protein compare
ABI39_RS14465 -1.4 -5.1 hypothetical protein compare
ABI39_RS06250 -1.4 -6.9 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS18745 -1.3 -2.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS03170 -1.3 -1.3 plasmid mobilization relaxosome protein MobC compare
ABI39_RS19950 -1.3 -0.9 diaminopimelate decarboxylase compare
ABI39_RS05635 -1.3 -1.2 class I SAM-dependent methyltransferase compare
ABI39_RS04230 -1.3 -2.2 RNA polymerase factor sigma-54 compare
ABI39_RS19385 -1.3 -1.7 hypothetical protein compare
ABI39_RS18740 -1.3 -2.4 ATP-binding protein compare
ABI39_RS09915 -1.3 -2.3 DUF5056 domain-containing protein compare
ABI39_RS10650 -1.3 -7.3 AraC family transcriptional regulator compare
ABI39_RS20090 -1.3 -4.9 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS00760 -1.2 -1.7 YjgP/YjgQ family permease compare
ABI39_RS17170 -1.2 -1.2 protein BatD compare
ABI39_RS17765 -1.2 -2.3 hypothetical protein compare
ABI39_RS11190 -1.2 -2.2 helix-turn-helix domain-containing protein compare
ABI39_RS02755 -1.2 -1.1 glycosyltransferase compare
ABI39_RS20965 -1.2 -1.4 SPOR domain-containing protein compare
ABI39_RS02965 -1.2 -5.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS22260 -1.1 -2.0 DUF3873 family protein compare
ABI39_RS20080 -1.1 -4.4 electron transport complex subunit RsxA compare
ABI39_RS17160 -1.1 -0.8 VWA domain-containing protein compare
ABI39_RS12415 -1.1 -2.0 biotin/lipoyl-binding protein compare
ABI39_RS04860 -1.1 -1.8 HigA family addiction module antidote protein compare
ABI39_RS16445 -1.1 -1.8 alpha-ribazole phosphatase compare
ABI39_RS15415 -1.1 -2.8 hypothetical protein compare
ABI39_RS14285 -1.1 -2.1 hypothetical protein compare
ABI39_RS15840 -1.1 -3.4 hypothetical protein compare
ABI39_RS20085 -1.1 -4.0 electron transport complex subunit E compare
ABI39_RS14245 -1.1 -6.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS15430 -1.1 -1.0 hypothetical protein compare
ABI39_RS09830 -1.1 -4.3 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABI39_RS15075 -1.1 -2.2 hypothetical protein compare
ABI39_RS14235 -1.1 -2.3 hypothetical protein compare
ABI39_RS13390 -1.1 -2.0 UpxY family transcription antiterminator compare
ABI39_RS02470 -1.1 -1.9 ATP-dependent DNA helicase RecG compare
ABI39_RS14335 -1.1 -2.6 antitoxin compare
ABI39_RS20105 -1.0 -3.6 Fe-S cluster domain-containing protein compare
ABI39_RS20360 -1.0 -1.9 phosphate signaling complex protein PhoU compare
ABI39_RS03110 -1.0 -1.7 hypothetical protein compare
ABI39_RS06620 -1.0 -2.1 HU family DNA-binding protein compare
ABI39_RS02285 -1.0 -1.2 DNA mismatch repair endonuclease MutL compare
ABI39_RS18395 -1.0 -1.9 hypothetical protein compare
ABI39_RS13180 -1.0 -1.9 FAD:protein FMN transferase compare
ABI39_RS16980 -1.0 -1.9 helix-turn-helix transcriptional regulator compare
ABI39_RS15650 -0.9 -4.1 cobyrinate a,c-diamide synthase compare
ABI39_RS14250 -0.9 -2.6 8-amino-7-oxononanoate synthase compare
ABI39_RS20100 -0.9 -4.0 electron transport complex subunit RsxC compare
ABI39_RS13185 -0.9 -1.1 manganese efflux pump compare
ABI39_RS14265 -0.9 -3.9 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS19920 -0.9 -1.4 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS15400 -0.9 -3.8 TraR/DksA C4-type zinc finger protein compare
ABI39_RS05655 -0.9 -2.2 hypothetical protein compare
ABI39_RS14260 -0.9 -4.5 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS08555 -0.9 -2.5 Trk system potassium transporter TrkA compare
ABI39_RS17150 -0.9 -1.4 hypothetical protein compare
ABI39_RS14715 -0.9 -1.7 RidA family protein compare
ABI39_RS21685 -0.9 -1.8 hypothetical protein compare
ABI39_RS22855 -0.9 -1.5 hypothetical protein compare
ABI39_RS15320 -0.9 -4.3 PorT family protein compare
ABI39_RS06070 -0.9 -1.3 hypothetical protein compare
ABI39_RS18170 -0.9 -0.9 hypothetical protein compare
ABI39_RS09825 -0.9 -3.3 DUF1573 domain-containing protein compare
ABI39_RS15855 -0.9 -1.5 helix-turn-helix transcriptional regulator compare
ABI39_RS04675 -0.9 -1.0 hypothetical protein compare
ABI39_RS17770 -0.9 -1.3 flavodoxin family protein compare
ABI39_RS16315 -0.9 -0.8 conjugative transposon protein TraK compare
ABI39_RS16930 -0.9 -2.0 RNA-binding protein compare
ABI39_RS19615 -0.9 -1.1 hypothetical protein compare
ABI39_RS14175 -0.9 -1.6 PadR family transcriptional regulator compare
ABI39_RS04715 -0.8 -3.2 NUDIX domain-containing protein compare
ABI39_RS18220 -0.8 -2.2 3'-5' exonuclease domain-containing protein 2 compare
ABI39_RS14070 -0.8 -1.1 DNA-binding protein compare
ABI39_RS11930 -0.8 -1.6 recombinase RecA compare
ABI39_RS16050 -0.8 -1.0 site-specific integrase compare
ABI39_RS10090 -0.8 -5.0 hypothetical protein compare
ABI39_RS15615 -0.8 -1.7 cysteine-rich CWC family protein compare
ABI39_RS22625 -0.8 -1.6 hypothetical protein compare
ABI39_RS22300 -0.8 -1.6 hypothetical protein compare
ABI39_RS08145 -0.8 -0.9 DUF4290 domain-containing protein compare
ABI39_RS22100 -0.8 -1.2 hypothetical protein compare
ABI39_RS07655 -0.8 -0.7 peptidase M15 compare
ABI39_RS08035 -0.8 -0.9 adenylosuccinate lyase compare
ABI39_RS16695 -0.8 -4.5 carbon-nitrogen hydrolase compare
ABI39_RS13000 -0.8 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS19545 -0.8 -1.9 adenine methyltransferase compare
ABI39_RS09800 -0.8 -1.5 helix-turn-helix transcriptional regulator compare
ABI39_RS17745 -0.8 -1.0 sulfur carrier protein ThiS compare
ABI39_RS21185 -0.8 -4.0 ROK family transcriptional regulator compare
ABI39_RS15775 -0.8 -1.2 hypothetical protein compare
ABI39_RS13465 -0.8 -1.5 DUF3575 domain-containing protein compare
ABI39_RS16235 -0.8 -1.0 hypothetical protein compare
ABI39_RS14255 -0.8 -2.2 DUF452 family protein compare
ABI39_RS02460 -0.8 -1.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABI39_RS19630 -0.8 -1.1 hypothetical protein compare
ABI39_RS12535 -0.8 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Fructose-6-phosphate across organisms