Experiment set1S43 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.2 -16.7 Pca regulon regulatory protein compare
MPMX19_01053 -2.3 -5.3 Dihydroorotase compare
MPMX19_05680 -2.3 -4.6 Cell cycle response regulator CtrA compare
MPMX19_02267 -2.3 -1.5 hypothetical protein compare
MPMX19_04114 -2.2 -5.1 hypothetical protein compare
MPMX19_04112 -2.2 -4.8 hypothetical protein compare
MPMX19_02980 -2.1 -2.2 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_02543 -2.0 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00705 -2.0 -3.8 Cell division coordinator CpoB compare
MPMX19_03959 -2.0 -3.0 hypothetical protein compare
MPMX19_01054 -2.0 -6.6 Aspartate carbamoyltransferase compare
MPMX19_01545 -2.0 -1.3 Lon protease compare
MPMX19_04093 -1.9 -4.7 hypothetical protein compare
MPMX19_02657 -1.9 -15.2 Glutamate synthase [NADPH] large chain compare
MPMX19_06547 -1.8 -6.2 hypothetical protein compare
MPMX19_05678 -1.8 -6.8 hypothetical protein compare
MPMX19_00867 -1.8 -12.7 Flagellar biosynthetic protein FlhB compare
MPMX19_01630 -1.8 -4.8 Phosphoribosylamine--glycine ligase compare
MPMX19_03609 -1.7 -3.6 HTH-type transcriptional repressor NagR compare
MPMX19_02658 -1.7 -11.0 Glutamate synthase [NADPH] small chain compare
MPMX19_00128 -1.7 -10.8 hypothetical protein compare
MPMX19_01597 -1.7 -2.7 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_04000 -1.6 -4.6 Flagellar motor switch protein FliG compare
MPMX19_00862 -1.6 -8.5 hypothetical protein compare
MPMX19_00694 -1.5 -3.0 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_04835 -1.5 -2.8 hypothetical protein compare
MPMX19_05679 -1.5 -8.5 Flagellum-specific ATP synthase compare
MPMX19_00126 -1.5 -3.5 hypothetical protein compare
MPMX19_02136 -1.5 -1.7 Phage shock protein A compare
MPMX19_04087 -1.5 -3.6 Flagellum site-determining protein YlxH compare
MPMX19_05023 -1.5 -2.2 hypothetical protein compare
MPMX19_00530 -1.5 -3.2 Orotate phosphoribosyltransferase compare
MPMX19_01718 -1.5 -2.7 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_04094 -1.5 -8.8 Flagellar M-ring protein compare
MPMX19_04092 -1.4 -7.0 Flagellar motor switch protein FliN compare
MPMX19_04869 -1.4 -4.7 DNA polymerase I compare
MPMX19_00838 -1.4 -3.1 GTP pyrophosphokinase rsh compare
MPMX19_00866 -1.4 -6.2 Flagellar biosynthetic protein FliR compare
MPMX19_06090 -1.4 -1.7 Pyruvate dehydrogenase complex repressor compare
MPMX19_00858 -1.3 -5.0 Flagellar biosynthetic protein FliP compare
MPMX19_02405 -1.3 -3.2 hypothetical protein compare
MPMX19_01483 -1.3 -8.6 Flagellar basal-body rod protein FlgG compare
MPMX19_04208 -1.3 -3.6 flagellum biosynthesis repressor protein FlbT compare
MPMX19_01884 -1.3 -3.1 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_00863 -1.3 -6.8 Flagellar basal-body rod protein FlgC compare
MPMX19_02268 -1.2 -3.3 hypothetical protein compare
MPMX19_01015 -1.2 -4.6 Anthranilate phosphoribosyltransferase compare
MPMX19_00864 -1.2 -3.7 Flagellar hook-basal body complex protein FliE compare
MPMX19_01497 -1.2 -3.5 hypothetical protein compare
MPMX19_02207 -1.2 -3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_01484 -1.2 -4.7 Flagellar basal-body rod protein FlgG compare
MPMX19_02981 -1.2 -4.5 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01084 -1.2 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_03976 -1.2 -3.8 hypothetical protein compare
MPMX19_00841 -1.2 -2.1 Holo-[acyl-carrier-protein] synthase compare
MPMX19_01014 -1.2 -4.2 Indole-3-glycerol phosphate synthase compare
MPMX19_01494 -1.2 -6.2 Flagellar P-ring protein compare
MPMX19_02218 -1.2 -1.9 hypothetical protein compare
MPMX19_01560 -1.2 -1.7 3'-5' exonuclease DinG compare
MPMX19_00748 -1.1 -3.0 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_04222 -1.1 -9.1 hypothetical protein compare
MPMX19_02303 -1.1 -2.4 hypothetical protein compare
MPMX19_00714 -1.1 -5.6 Ferrous-iron efflux pump FieF compare
MPMX19_06928 -1.1 -2.1 hypothetical protein compare
MPMX19_03752 -1.1 -2.0 hypothetical protein compare
MPMX19_01495 -1.1 -1.7 hypothetical protein compare
MPMX19_00311 -1.1 -8.9 hypothetical protein compare
MPMX19_06734 -1.0 -8.6 Alginate biosynthesis protein AlgA compare
MPMX19_03007 -1.0 -3.2 Arabinose import ATP-binding protein AraG compare
MPMX19_04089 -1.0 -7.2 Flagellar biosynthesis protein FlhA compare
MPMX19_04218 -1.0 -4.0 Protein phosphatase PrpC compare
MPMX19_01883 -1.0 -4.3 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_05144 -1.0 -1.2 hypothetical protein compare
MPMX19_00906 -0.9 -7.2 Amidophosphoribosyltransferase compare
MPMX19_01304 -0.9 -5.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_00854 -0.9 -8.2 hypothetical protein compare
MPMX19_02675 -0.9 -7.5 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_00266 -0.9 -2.1 hypothetical protein compare
MPMX19_05458 -0.9 -3.1 hypothetical protein compare
MPMX19_05100 -0.9 -2.8 hypothetical protein compare
MPMX19_00478 -0.9 -1.4 putative protein RP812 compare
MPMX19_06577 -0.9 -6.9 hypothetical protein compare
MPMX19_00976 -0.9 -1.8 ATP-dependent RNA helicase RhlE compare
MPMX19_06644 -0.9 -7.4 GDP-mannose 4,6-dehydratase compare
MPMX19_03063 -0.9 -2.5 hypothetical protein compare
MPMX19_00020 -0.9 -1.5 hypothetical protein compare
MPMX19_05825 -0.9 -2.4 hypothetical protein compare
MPMX19_01822 -0.9 -4.3 2-isopropylmalate synthase compare
MPMX19_04391 -0.9 -4.6 Homoserine O-acetyltransferase compare
MPMX19_05727 -0.9 -4.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_00015 -0.9 -2.1 hypothetical protein compare
MPMX19_05624 -0.9 -1.5 hypothetical protein compare
MPMX19_01729 -0.9 -1.6 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_05295 -0.8 -2.2 hypothetical protein compare
MPMX19_06819 -0.8 -1.5 hypothetical protein compare
MPMX19_05387 -0.8 -1.7 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_00860 -0.8 -1.7 hypothetical protein compare
MPMX19_00142 -0.8 -1.3 hypothetical protein compare
MPMX19_04520 -0.8 -3.2 hypothetical protein compare
MPMX19_04615 -0.8 -1.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00680 -0.8 -1.7 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_01918 -0.8 -1.4 tRNA-Ala compare
MPMX19_03331 -0.8 -2.4 hypothetical protein compare
MPMX19_00304 -0.8 -2.1 Phosphatidylcholine synthase compare
MPMX19_05065 -0.8 -1.6 Farnesyl diphosphate synthase compare
MPMX19_05714 -0.8 -4.9 hypothetical protein compare
MPMX19_04207 -0.8 -2.4 hypothetical protein compare
MPMX19_01395 -0.8 -1.8 hypothetical protein compare
MPMX19_00181 -0.8 -2.8 hypothetical protein compare
MPMX19_04205 -0.8 -2.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05119 -0.8 -5.5 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_02084 -0.8 -1.3 hypothetical protein compare
MPMX19_03634 -0.8 -2.1 Arginase compare
MPMX19_05748 -0.8 -1.6 Response regulator SaeR compare
MPMX19_06746 -0.8 -0.9 Chemotaxis protein CheW compare
MPMX19_03276 -0.8 -2.3 hypothetical protein compare
MPMX19_05796 -0.8 -2.6 HTH-type transcriptional repressor BdcR compare
MPMX19_06544 -0.8 -5.7 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_04079 -0.8 -1.4 hypothetical protein compare
MPMX19_06581 -0.8 -4.9 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_05380 -0.8 -2.5 hypothetical protein compare
MPMX19_03788 -0.8 -3.1 hypothetical protein compare
MPMX19_06762 -0.8 -1.7 Peptide deformylase compare
MPMX19_01101 -0.8 -1.7 hypothetical protein compare
MPMX19_01777 -0.7 -2.1 2-aminoadipate transaminase compare
MPMX19_02378 -0.7 -2.0 hypothetical protein compare
MPMX19_02089 -0.7 -2.5 hypothetical protein compare
MPMX19_03825 -0.7 -1.1 IS5 family transposase IS4811 compare
MPMX19_06123 -0.7 -1.2 hypothetical protein compare
MPMX19_01486 -0.7 -4.4 Flagellar L-ring protein compare
MPMX19_05361 -0.7 -3.7 CRP-like cAMP-activated global transcriptional regulator compare
MPMX19_03450 -0.7 -1.1 hypothetical protein compare
MPMX19_00503 -0.7 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_06202 -0.7 -1.2 hypothetical protein compare
MPMX19_04864 -0.7 -2.0 hypothetical protein compare
MPMX19_00184 -0.7 -2.8 hypothetical protein compare
MPMX19_00504 -0.7 -2.4 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_03924 -0.7 -1.8 hypothetical protein compare
MPMX19_04199 -0.7 -4.5 Pseudaminic acid synthase compare
MPMX19_02579 -0.7 -1.9 hypothetical protein compare
MPMX19_04392 -0.7 -1.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_01085 -0.7 -3.1 hypothetical protein compare
MPMX19_04554 -0.7 -2.3 Response regulator PleD compare
MPMX19_02736 -0.7 -4.6 Tryptophan synthase beta chain compare
MPMX19_05455 -0.7 -3.3 hypothetical protein compare
MPMX19_00890 -0.7 -1.9 hypothetical protein compare
MPMX19_01496 -0.7 -3.8 hypothetical protein compare
MPMX19_05473 -0.7 -2.1 hypothetical protein compare
MPMX19_06534 -0.7 -1.8 Putative amino-acid ABC transporter-binding protein YhdW compare
MPMX19_02202 -0.7 -1.1 hypothetical protein compare
MPMX19_02573 -0.7 -2.0 Dihydrofolate reductase compare
MPMX19_03226 -0.7 -2.3 hypothetical protein compare
MPMX19_03822 -0.7 -1.6 Sulfur carrier protein FdhD compare
MPMX19_05719 -0.7 -1.7 hypothetical protein compare
MPMX19_05453 -0.7 -1.9 hypothetical protein compare
MPMX19_02514 -0.7 -1.1 hypothetical protein compare
MPMX19_01719 -0.7 -1.6 Putative fluoride ion transporter CrcB compare
MPMX19_01864 -0.7 -1.4 Regulatory protein AtoC compare
MPMX19_04569 -0.7 -2.0 Anti-sigma-F factor NrsF compare
MPMX19_01499 -0.7 -2.7 hypothetical protein compare
MPMX19_06437 -0.6 -1.8 DNA-invertase hin compare
MPMX19_01912 -0.6 -1.7 Acetyl-CoA acetyltransferase compare
MPMX19_06253 -0.6 -1.6 hypothetical protein compare
MPMX19_01243 -0.6 -1.2 hypothetical protein compare
MPMX19_04963 -0.6 -1.4 Cysteine desulfurase IscS compare
MPMX19_00887 -0.6 -1.4 hypothetical protein compare
MPMX19_06014 -0.6 -3.6 Histidinol-phosphate aminotransferase compare
MPMX19_00152 -0.6 -1.3 hypothetical protein compare
MPMX19_04206 -0.6 -2.7 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_02392 -0.6 -5.1 Aspartate/prephenate aminotransferase compare
MPMX19_06677 -0.6 -1.6 hypothetical protein compare
MPMX19_02137 -0.6 -2.6 hypothetical protein compare
MPMX19_04951 -0.6 -4.0 hypothetical protein compare
MPMX19_01487 -0.6 -1.9 hypothetical protein compare
MPMX19_01485 -0.6 -4.6 hypothetical protein compare
MPMX19_01937 -0.6 -4.3 hypothetical protein compare
MPMX19_06929 -0.6 -2.1 hypothetical protein compare
MPMX19_05996 -0.6 -2.0 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_06418 -0.6 -3.5 Adaptive-response sensory-kinase SasA compare
MPMX19_05590 -0.6 -2.0 HTH-type transcriptional regulator SyrM 1 compare
MPMX19_06134 -0.6 -2.1 hypothetical protein compare
MPMX19_04326 -0.6 -2.2 Beta-hexosaminidase compare
MPMX19_02979 -0.6 -2.2 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_01703 -0.6 -1.3 hypothetical protein compare
MPMX19_04687 -0.6 -1.6 Atrazine chlorohydrolase compare
MPMX19_00633 -0.6 -3.0 Intermembrane phospholipid transport system lipoprotein MlaA compare
MPMX19_03636 -0.6 -2.1 Octopine permease ATP-binding protein P compare
MPMX19_04451 -0.6 -2.6 hypothetical protein compare
MPMX19_02011 -0.6 -1.9 RNA helicase CrhR compare
MPMX19_06009 -0.6 -1.4 hypothetical protein compare
MPMX19_06271 -0.6 -4.3 hypothetical protein compare
MPMX19_04959 -0.6 -3.4 5-oxoprolinase subunit A compare
MPMX19_03042 -0.6 -1.9 hypothetical protein compare
MPMX19_02402 -0.6 -1.0 hypothetical protein compare
MPMX19_05070 -0.6 -3.0 hypothetical protein compare
MPMX19_06785 -0.6 -1.1 L-idonate 5-dehydrogenase (NAD(P)(+)) compare
MPMX19_04913 -0.6 -0.8 hypothetical protein compare
MPMX19_01277 -0.6 -3.1 hypothetical protein compare
MPMX19_04115 -0.6 -1.2 Sensor histidine kinase RcsC compare
MPMX19_05068 -0.6 -1.6 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms