Experiment set1S43 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06197 +1.3 2.8 hypothetical protein compare
MPMX19_02041 +1.0 3.8 Protein YciI compare
MPMX19_03800 +0.9 2.4 hypothetical protein compare
MPMX19_06353 +0.9 2.4 hypothetical protein compare
MPMX19_05358 +0.8 1.8 hypothetical protein compare
MPMX19_02815 +0.8 2.9 2-keto-4-pentenoate hydratase compare
MPMX19_05207 +0.8 1.9 Hemolysin secretion protein D, plasmid compare
MPMX19_05176 +0.8 2.0 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_03262 +0.8 2.5 putative HTH-type transcriptional repressor ExuR compare
MPMX19_04724 +0.8 3.7 hypothetical protein compare
MPMX19_03866 +0.8 1.4 Ribose import permease protein RbsC compare
MPMX19_04161 +0.8 2.7 hypothetical protein compare
MPMX19_05254 +0.8 1.6 Carbon monoxide dehydrogenase small chain compare
MPMX19_02987 +0.8 2.0 hypothetical protein compare
MPMX19_01617 +0.7 1.7 hypothetical protein compare
MPMX19_06156 +0.7 2.3 hypothetical protein compare
MPMX19_04726 +0.7 2.8 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_01249 +0.7 1.8 Periplasmic serine endoprotease DegP compare
MPMX19_03948 +0.7 1.0 tRNA-Ser compare
MPMX19_06519 +0.7 1.2 HTH-type transcriptional repressor NagR compare
MPMX19_04633 +0.7 2.9 hypothetical protein compare
MPMX19_03900 +0.6 3.1 Hca operon transcriptional activator HcaR compare
MPMX19_00025 +0.6 1.9 hypothetical protein compare
MPMX19_03073 +0.6 2.3 hypothetical protein compare
MPMX19_04051 +0.6 2.7 Alcohol dehydrogenase compare
MPMX19_01493 +0.6 1.4 Flagellar assembly protein FliX compare
MPMX19_01394 +0.6 0.7 hypothetical protein compare
MPMX19_00212 +0.6 5.0 Nitrogen fixation regulation protein FixK compare
MPMX19_02937 +0.6 1.3 hypothetical protein compare
MPMX19_05313 +0.6 1.4 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_02779 +0.6 1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05726 +0.6 1.8 hypothetical protein compare
MPMX19_04265 +0.6 1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_04145 +0.6 1.3 hypothetical protein compare
MPMX19_03072 +0.6 1.0 hypothetical protein compare
MPMX19_01652 +0.6 2.4 hypothetical protein compare
MPMX19_05906 +0.6 1.2 hypothetical protein compare
MPMX19_00580 +0.6 2.6 hypothetical protein compare
MPMX19_05586 +0.6 1.1 hypothetical protein compare
MPMX19_05618 +0.6 2.3 putative manganese efflux pump MntP compare
MPMX19_06211 +0.6 1.9 tRNA-Ala compare
MPMX19_03462 +0.6 1.8 Acetate CoA-transferase subunit alpha compare
MPMX19_04246 +0.6 2.3 hypothetical protein compare
MPMX19_04393 +0.6 1.9 hypothetical protein compare
MPMX19_05581 +0.5 1.0 hypothetical protein compare
MPMX19_05013 +0.5 2.8 Cytochrome b compare
MPMX19_03504 +0.5 1.4 Sulfur carrier protein FdhD compare
MPMX19_02865 +0.5 2.0 hypothetical protein compare
MPMX19_03707 +0.5 1.8 L-cystine import ATP-binding protein TcyC compare
MPMX19_05798 +0.5 1.5 HTH-type transcriptional repressor NanR compare
MPMX19_04133 +0.5 3.5 Transcriptional regulatory protein tctD compare
MPMX19_06961 +0.5 2.7 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_06383 +0.5 1.7 hypothetical protein compare
MPMX19_06808 +0.5 1.4 HTH-type transcriptional regulator DmlR compare
MPMX19_04779 +0.5 1.0 hypothetical protein compare
MPMX19_03109 +0.5 1.6 hypothetical protein compare
MPMX19_01244 +0.5 2.1 hypothetical protein compare
MPMX19_05606 +0.5 1.6 hypothetical protein compare
MPMX19_05352 +0.5 1.3 putative cysteine-rich protein YhjQ compare
MPMX19_06887 +0.5 1.7 Adenine deaminase compare
MPMX19_01748 +0.5 1.4 hypothetical protein compare
MPMX19_03100 +0.5 2.5 hypothetical protein compare
MPMX19_03421 +0.5 1.5 hypothetical protein compare
MPMX19_01702 +0.5 1.6 Inorganic triphosphatase compare
MPMX19_05273 +0.5 2.3 hypothetical protein compare
MPMX19_06791 +0.5 2.7 Leucine-responsive regulatory protein compare
MPMX19_06326 +0.5 1.7 hypothetical protein compare
MPMX19_06467 +0.5 2.0 hypothetical protein compare
MPMX19_03790 +0.5 0.8 hypothetical protein compare
MPMX19_05190 +0.5 1.9 putative malonic semialdehyde reductase RutE compare
MPMX19_02862 +0.5 2.1 hypothetical protein compare
MPMX19_02043 +0.5 2.5 hypothetical protein compare
MPMX19_00268 +0.5 1.0 Transcriptional regulatory protein OmpR compare
MPMX19_03929 +0.5 2.0 hypothetical protein compare
MPMX19_04648 +0.5 2.0 hypothetical protein compare
MPMX19_03083 +0.5 1.2 hypothetical protein compare
MPMX19_05924 +0.5 2.6 hypothetical protein compare
MPMX19_06464 +0.5 1.7 Tryptophan synthase beta chain compare
MPMX19_00923 +0.5 1.4 hypothetical protein compare
MPMX19_03250 +0.5 2.3 Glycine cleavage system transcriptional activator compare
MPMX19_04579 +0.5 1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_02679 +0.5 1.9 hypothetical protein compare
MPMX19_04095 +0.5 1.7 hypothetical protein compare
MPMX19_05328 +0.5 1.5 hypothetical protein compare
MPMX19_06144 +0.4 1.7 hypothetical protein compare
MPMX19_06272 +0.4 0.4 hypothetical protein compare
MPMX19_02149 +0.4 1.4 hypothetical protein compare
MPMX19_03257 +0.4 1.4 Glycine betaine/proline betaine transport system ATP-binding protein ProV compare
MPMX19_00730 +0.4 2.7 hypothetical protein compare
MPMX19_04727 +0.4 2.1 hypothetical protein compare
MPMX19_06509 +0.4 1.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05622 +0.4 3.3 Sensor histidine kinase RegB compare
MPMX19_06788 +0.4 1.6 putative protein YiaX1 compare
MPMX19_04572 +0.4 2.8 Putative protein-methionine-sulfoxide reductase subunit YedZ1 compare
MPMX19_01983 +0.4 2.1 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
MPMX19_02181 +0.4 1.6 hypothetical protein compare
MPMX19_06424 +0.4 2.7 hypothetical protein compare
MPMX19_06261 +0.4 2.2 hypothetical protein compare
MPMX19_02874 +0.4 1.8 HTH-type transcriptional regulator SutR compare
MPMX19_04120 +0.4 1.6 hypothetical protein compare
MPMX19_02787 +0.4 1.9 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_05195 +0.4 1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_00256 +0.4 2.3 hypothetical protein compare
MPMX19_06824 +0.4 1.5 Flavin-dependent trigonelline monooxygenase, reductase component compare
MPMX19_03710 +0.4 1.6 Glycine cleavage system transcriptional activator compare
MPMX19_03102 +0.4 2.4 hypothetical protein compare
MPMX19_04825 +0.4 1.3 hypothetical protein compare
MPMX19_03724 +0.4 0.7 hypothetical protein compare
MPMX19_04609 +0.4 1.8 Putative short-chain type dehydrogenase/reductase compare
MPMX19_04737 +0.4 1.6 Methenyltetrahydromethanopterin cyclohydrolase compare
MPMX19_05850 +0.4 0.9 hypothetical protein compare
MPMX19_00334 +0.4 0.9 hypothetical protein compare
MPMX19_02279 +0.4 1.1 hypothetical protein compare
MPMX19_04509 +0.4 1.8 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_02835 +0.4 1.8 Phosphoribosyl-dephospho-CoA transferase compare
MPMX19_00414 +0.4 1.0 Pyruvate dehydrogenase complex repressor compare
MPMX19_03423 +0.4 1.8 hypothetical protein compare
MPMX19_03637 +0.4 2.3 Nopaline-binding periplasmic protein compare
MPMX19_03757 +0.4 1.4 D-ribose pyranase compare
MPMX19_06972 +0.4 1.9 hypothetical protein compare
MPMX19_06165 +0.4 3.0 Amino acid--[acyl-carrier-protein] ligase compare
MPMX19_06917 +0.4 1.6 HTH-type transcriptional regulator PgrR compare
MPMX19_06235 +0.4 1.0 Glycine cleavage system transcriptional activator compare
MPMX19_06737 +0.4 1.8 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_03093 +0.4 1.5 Manganese import ATP-binding protein ScaC compare
MPMX19_01073 +0.4 1.6 5'-nucleotidase compare
MPMX19_05896 +0.4 1.3 hypothetical protein compare
MPMX19_05779 +0.4 1.1 Beta-ketoadipyl-CoA thiolase compare
MPMX19_05143 +0.4 0.7 hypothetical protein compare
MPMX19_03340 +0.4 1.3 hypothetical protein compare
MPMX19_00134 +0.4 1.5 hypothetical protein compare
MPMX19_04680 +0.4 1.4 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_05333 +0.4 1.2 Thymidine phosphorylase compare
MPMX19_04257 +0.4 2.5 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase compare
MPMX19_00473 +0.4 1.2 hypothetical protein compare
MPMX19_02742 +0.4 1.3 hypothetical protein compare
MPMX19_02801 +0.4 0.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02127 +0.4 2.5 hypothetical protein compare
MPMX19_01278 +0.4 2.5 NAD(P) transhydrogenase subunit alpha part 1 compare
MPMX19_06510 +0.4 1.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05879 +0.4 2.0 L-cystine transport system permease protein YecS compare
MPMX19_04077 +0.4 2.1 Adaptive-response sensory-kinase SasA compare
MPMX19_06888 +0.4 1.6 hypothetical protein compare
MPMX19_03014 +0.4 2.1 Transcriptional activatory protein AadR compare
MPMX19_03141 +0.4 1.1 hypothetical protein compare
MPMX19_06524 +0.4 1.9 hypothetical protein compare
MPMX19_05193 +0.4 1.0 Taurine-binding periplasmic protein compare
MPMX19_03052 +0.4 1.9 hypothetical protein compare
MPMX19_02393 +0.4 1.8 hypothetical protein compare
MPMX19_00663 +0.4 1.3 hypothetical protein compare
MPMX19_04636 +0.4 1.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_03846 +0.4 1.3 hypothetical protein compare
MPMX19_06932 +0.4 1.7 hypothetical protein compare
MPMX19_03287 +0.4 2.0 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_04494 +0.4 2.0 p-hydroxybenzoic acid efflux pump subunit AaeA compare
MPMX19_03676 +0.4 1.4 hypothetical protein compare
MPMX19_04691 +0.4 2.4 hypothetical protein compare
MPMX19_02275 +0.4 1.2 hypothetical protein compare
MPMX19_06770 +0.4 1.7 NAD-dependent glycerol dehydrogenase compare
MPMX19_00362 +0.4 0.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06736 +0.4 1.3 hypothetical protein compare
MPMX19_03441 +0.4 2.3 hypothetical protein compare
MPMX19_05837 +0.4 2.1 hypothetical protein compare
MPMX19_04308 +0.4 2.3 hypothetical protein compare
MPMX19_00686 +0.4 1.3 hypothetical protein compare
MPMX19_03833 +0.4 2.2 hypothetical protein compare
MPMX19_06810 +0.4 2.2 hypothetical protein compare
MPMX19_00010 +0.4 1.4 Transcriptional regulatory protein OmpR compare
MPMX19_05899 +0.4 2.8 hypothetical protein compare
MPMX19_03112 +0.4 2.0 Ribonuclease BN compare
MPMX19_05483 +0.4 1.4 hypothetical protein compare
MPMX19_01475 +0.4 1.7 hypothetical protein compare
MPMX19_03870 +0.4 1.1 L-aspartate dehydrogenase compare
MPMX19_04240 +0.4 1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02816 +0.4 0.8 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04508 +0.4 1.6 Phosphoglycolate phosphatase compare
MPMX19_06378 +0.4 2.1 hypothetical protein compare
MPMX19_03576 +0.4 2.6 Fosmidomycin resistance protein compare
MPMX19_06569 +0.4 1.3 hypothetical protein compare
MPMX19_06690 +0.4 2.1 hypothetical protein compare
MPMX19_06898 +0.4 2.1 FAD-dependent urate hydroxylase compare
MPMX19_05592 +0.4 2.0 Glycine cleavage system transcriptional activator compare
MPMX19_06269 +0.4 2.0 IS110 family transposase ISHne4 compare
MPMX19_01811 +0.4 1.1 hypothetical protein compare
MPMX19_06773 +0.4 1.2 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_04202 +0.4 1.6 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
MPMX19_04211 +0.4 1.8 hypothetical protein compare
MPMX19_04118 +0.4 1.1 Sensor histidine kinase RcsC compare
MPMX19_01445 +0.4 1.0 hypothetical protein compare
MPMX19_05910 +0.4 1.5 hypothetical protein compare
MPMX19_00417 +0.4 1.9 hypothetical protein compare
MPMX19_03476 +0.4 1.2 hypothetical protein compare
MPMX19_03008 +0.4 2.3 hypothetical protein compare
MPMX19_00600 +0.4 1.5 hypothetical protein compare
MPMX19_02633 +0.4 2.2 Chaperone protein DnaJ compare
MPMX19_03939 +0.4 0.9 Enoyl-CoA-hydratase compare
MPMX19_01757 +0.4 1.7 Ferredoxin--NADP reductase compare
MPMX19_02039 +0.3 1.4 hypothetical protein compare
MPMX19_05652 +0.3 1.3 hypothetical protein compare
MPMX19_06334 +0.3 1.3 Arsenite oxidase subunit AioB compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms