Experiment set1S425 for Escherichia coli ECOR38
TP7
Group: phageMedia: LB_plus_SM_buffer + MOI 10
Culturing: Ecoli_ECOR38_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 11/24/2024
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 21 genes in this experiment
For phage MOI 10 in Escherichia coli ECOR38
For phage MOI 10 across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Lipopolysaccharide biosynthesis
- Pentose phosphate pathway
- Pentose and glucuronate interconversions
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Puromycin biosynthesis
- Tryptophan metabolism
- Glutathione metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Biosynthesis of siderophore group nonribosomal peptides
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
- mTOR signaling pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pentose phosphate pathway (oxidative branch) I | 3 | 3 | 1 |
| molybdenum cofactor biosynthesis | 3 | 3 | 1 |
| pectin degradation I | 3 | 1 | 1 |
| peptidoglycan recycling II | 10 | 7 | 2 |
| pectin degradation II | 5 | 3 | 1 |
| polymyxin resistance | 6 | 5 | 1 |
| peptidoglycan recycling I | 14 | 14 | 2 |
| pentose phosphate pathway | 8 | 8 | 1 |
| superpathway of glucose and xylose degradation | 17 | 17 | 1 |